View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3425_low_4 (Length: 582)

Name: NF3425_low_4
Description: NF3425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3425_low_4
NF3425_low_4
[»] chr6 (2 HSPs)
chr6 (134-567)||(28731430-28731864)
chr6 (460-567)||(28736184-28736293)
[»] scaffold0186 (3 HSPs)
scaffold0186 (1-436)||(4997-5428)
scaffold0186 (6-42)||(4924-4960)
scaffold0186 (6-50)||(4963-5007)
[»] chr8 (9 HSPs)
chr8 (6-436)||(18871575-18871984)
chr8 (1-437)||(133792-134222)
chr8 (78-269)||(111042-111232)
chr8 (107-436)||(2043050-2043372)
chr8 (6-42)||(18871536-18871572)
chr8 (6-43)||(2042877-2042914)
chr8 (449-521)||(6403987-6404060)
chr8 (6-42)||(133719-133755)
chr8 (6-43)||(110974-111011)
[»] chr7 (2 HSPs)
chr7 (449-525)||(2931682-2931759)
chr7 (459-496)||(27136330-27136367)
[»] chr4 (1 HSPs)
chr4 (449-521)||(39073899-39073972)
[»] chr3 (1 HSPs)
chr3 (451-521)||(1612945-1613016)


Alignment Details
Target: chr6 (Bit Score: 403; Significance: 0; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 134 - 567
Target Start/End: Complemental strand, 28731864 - 28731430
Alignment:
Q  134 atagggttgtgaaatgaatgaaaccctaaatgaaatcatgatctattaaatgcatagacaaaccattagtataagccggcatctatatattcaaagcaac 233  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  28731864 atagggttgtgaaatgaatgaaaccctaaatgaaatcatgatctattaaatgcgtagacaaaccattagtataagccggcatctatatattcaaagcaac 28731765  T
Q  234 actcttcaatgcaattacaccttacactcaatgtccatccattcaccatcacaacaattgtacattgaatttttatatcaaaaattataggtccgtttgt 333  Q
    ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  28731764 actcttcaatgcaattacaccttacactcaatgtctatccgttcaccatcacaacaattgtacattgaatttttatatcaaaaattatatgtccgtttgt 28731665  T
Q  334 ccttctagtatgtttaccataatttgatcttaacgttacatttttattttcaagattgtaggtgactataatataacataatcatttcacatctagtctc 433  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  28731664 ccttctagtatgtttaccataatttaatcttaacgttacatttttattttcaagattgtaggtgactataatataacataatcatttcacatctaggctc 28731565  T
Q  434 aaattggatttca-agtggaaatgaaatatgcaacaaaatttcaattagatactaaaactattaaagtttccatccaatgaagcatgtataaataaaatt 532  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28731564 aaattggatttcacagtggaaatgaaatatgcaacaaaatttcaattagatactaaaactattaaagtttccatccaatgaagcatgtataaataaaatt 28731465  T
Q  533 ccgctcggtattattcttattcttgcagccaaact 567  Q
    |||||||||||||||||||||||||||||||||||    
T  28731464 ccgctcggtattattcttattcttgcagccaaact 28731430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 460 - 567
Target Start/End: Complemental strand, 28736293 - 28736184
Alignment:
Q  460 tatgcaacaaaatttcaattagatactaaaactatta-aagtttccatccaatgaagcatgta-taaataaaattccgctcggtattattcttattcttg 557  Q
    |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |||||||||||||  || | ||| ||||||||||||    
T  28736293 tatgcaacaaaatttcaattagatactaaaaccattacaagtttccatccaatgaagcatgtactaaataaaattcccttctgcattgttcttattcttg 28736194  T
Q  558 cagccaaact 567  Q
    | ||||||||    
T  28736193 cggccaaact 28736184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186 (Bit Score: 223; Significance: 1e-122; HSPs: 3)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 1 - 436
Target Start/End: Original strand, 4997 - 5428
Alignment:
Q  1 ataactatattgttttgttcacaccaaaaataaggaaaaataaccatattgnnnnnnnnnnncacaccaataaaagaaaaaataattatatgtgttatta 100  Q
    ||||||||||| ||||||||||||||||||||||||||||||| |||||||            | ||||||||||||||||||||||||  |||||||||    
T  4997 ataactatattattttgttcacaccaaaaataaggaaaaataatcatattgtatttttg----ataccaataaaagaaaaaataattat--gtgttatta 5090  T
Q  101 acggcctaccttgaaagaaaaagagtttgttgaatagggttgtgaaatgaatgaaaccctaaatgaaatcatgatctattaaatgcatagacaaaccatt 200  Q
    |  || ||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||| ||||||||||||||| |||||||||||||||  ||||    
T  5091 attgcttaccttgaaagaaaaggagtttgttgactagggttgtgaaatgaatcaaaccctaactgaaatcatgatctaataaatgcatagacaagtcatt 5190  T
Q  201 agtataagccggcatctatatattcaaagcaacactcttcaatgcaatt--acaccttacactcaatgtccatccattcaccatcacaacaattgtacat 298  Q
    || || ||||  ||||||||||||||||||||||||||||||||||||   |||||||||||||||||||| |||  |||||||||| ||||||||||||    
T  5191 agcatgagcccacatctatatattcaaagcaacactcttcaatgcaatcgcacaccttacactcaatgtccctccgctcaccatcactacaattgtacat 5290  T
Q  299 tgaatttttatatcaaaaattataggtccgtttgtccttctagtatgtttaccataatttgatcttaacgttacatttttattttcaagattgtaggtga 398  Q
    | ||||||||||| |||||||| | |||| ||||| |||||||||||||| || ||||||||||  ||| ||| ||||||||||| ||||||||||| ||    
T  5291 tcaatttttatataaaaaattacatgtccatttgttcttctagtatgtttgccttaatttgatcagaactttatatttttatttttaagattgtaggcga 5390  T
Q  399 ctataatataacataatcatttcacatctagtctcaaa 436  Q
    | ||||||||||||||||||||||||||||| ||||||    
T  5391 ccataatataacataatcatttcacatctaggctcaaa 5428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 6 - 42
Target Start/End: Original strand, 4924 - 4960
Alignment:
Q  6 tatattgttttgttcacaccaaaaataaggaaaaata 42  Q
    |||||||||||||||||||||||||||||||||||||    
T  4924 tatattgttttgttcacaccaaaaataaggaaaaata 4960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 6 - 50
Target Start/End: Original strand, 4963 - 5007
Alignment:
Q  6 tatattgttttgttcacaccaaaaataaggaaaaataaccatatt 50  Q
    |||||||||||||||||||||||| |||||||||||||| |||||    
T  4963 tatattgttttgttcacaccaaaactaaggaaaaataactatatt 5007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 6 - 436
Target Start/End: Original strand, 18871575 - 18871984
Alignment:
Q  6 tatattgttttgttcacaccaaaaataaggaaaaataaccatattgnnnnnnnnnnncacaccaataaaagaaaaaataattatatgtgttattaacggc 105  Q
    |||||||||||||||||||||||||||||||||||||| |||||||           || ||||||||||| ||||||||||||||||||||||||   |    
T  18871575 tatattgttttgttcacaccaaaaataaggaaaaataatcatattgttttttt----cataccaataaaaggaaaaataattatatgtgttattaattac 18871670  T
Q  106 ctaccttgaaagaaaaagagtttgttgaatagggttgtgaaatgaatgaaaccctaaatgaaatcatgatctattaaatgcatagacaaaccattagtat 205  Q
    |||||||||||||||| ||||||||| | |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||    
T  18871671 ctaccttgaaagaaaaggagtttgttcactagggttgtgaaatgaatgaaaccttaaatgaaatcatgatctaataaatgcatagacaaaccattagcat 18871770  T
Q  206 aagccggca--tctatatattcaaagcaacactcttcaatgcaattacaccttacactcaatgtccatccattcaccatcacaacaattgtacattgaat 303  Q
     ||||  ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |  |||                   ||||||    
T  18871771 gagcccacatctctatatattcaaagcaacactcttcaatgcaattacaccttacactcaatgtcccttcgctca-------------------ttgaat 18871851  T
Q  304 ttttatatcaaaaattataggtccgtttgtccttctagtatgtttaccataatttgatcttaacgttacatttttattttcaagattgtaggtgactata 403  Q
    ||||||||||||||||| | |||| ||||| |||||||||||||| || |||||||| |  ||| ||| ||||||||||||||||||||||||||| |||    
T  18871852 ttttatatcaaaaattacatgtccatttgttcttctagtatgtttgccttaatttgaccagaactttatatttttattttcaagattgtaggtgaccata 18871951  T
Q  404 atataacataatcatttcacatctagtctcaaa 436  Q
    |||||||||||||||||||||||||| ||||||    
T  18871952 atataacataatcatttcacatctaggctcaaa 18871984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 1 - 437
Target Start/End: Original strand, 133792 - 134222
Alignment:
Q  1 ataactatattgttttgttcacaccaaaaataaggaaaaataaccatattgnnnnnnnnnnncacaccaataaaagaaaaaataattatatgtgttatta 100  Q
    |||| |||||||||||||||||||  ||||||||||||||||| |||||||             ||| |||||||| |||||||||||||||||||||||    
T  133792 ataattatattgttttgttcacactgaaaataaggaaaaataatcatattgttttttt------cactaataaaaggaaaaataattatatgtgttatta 133885  T
Q  101 acggcctaccttgaaagaaaaagagtttgttgaatagggttgtgaaatgaatgaaaccctaaatgaaatcatgatctattaaatgcatagacaaaccatt 200  Q
    |  |  ||||| ||||||||| ||||||||||| || ||||||||||||||||||| | |||||||||||| || ||| ||||||||||||||| |||||    
T  133886 attggttacctcgaaagaaaaggagtttgttgactatggttgtgaaatgaatgaaaacttaaatgaaatcaagacctaataaatgcatagacaagccatt 133985  T
Q  201 agtataagccggcatctatatattcaaagcaacactcttcaatgcaattacaccttacactcaatgtccatccattcaccatcacaacaattgtacattg 300  Q
    || || ||||  | |||||||||||||||||| |||||| |||||||| |||||||||||| ||| | ||||| ||| ||||||| | |||||||| |||    
T  133986 agcatgagcctacttctatatattcaaagcaatactctttaatgcaatcacaccttacacttaatattcatcccttctccatcacgataattgtactttg 134085  T
Q  301 aatttttatatcaaaaattataggtccgtttgtccttctagtatgtttaccataatttgatcttaacgttacatttttattttcaagattgtaggtgact 400  Q
    |||||||| ||||| ||||| | || | ||||| |||||||||||||| |||||||| ||||   || ||| ||||||||||||| |||| |  ||||      
T  134086 aatttttaaatcaataattacatgttcatttgttcttctagtatgttttccataattcgatcacgacattatatttttattttcatgattatctgtgatc 134185  T
Q  401 ataatataacataatcatttcacatctagtctcaaat 437  Q
    |||||||||||||||||||||| || ||| |||||||    
T  134186 ataatataacataatcatttcatatataggctcaaat 134222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 78 - 269
Target Start/End: Original strand, 111042 - 111232
Alignment:
Q  78 aaaaataattatatgtgttattaacggcctaccttgaaagaaaaagagtttgttgaatagggttgtgaaatgaatgaaaccctaaatgaaatcatgatct 177  Q
    |||| |||||||||| ||||||||  |  ||||||||||||||| ||||||||||| ||||||||| |||||||||||| ||||| |||||||| |  ||    
T  111042 aaaactaattatatgcgttattaattggttaccttgaaagaaaaggagtttgttgactagggttgtcaaatgaatgaaaacctaa-tgaaatcacggcct 111140  T
Q  178 attaaatgcatagacaaaccattagtataagccggcatctatatattcaaagcaacactcttcaatgcaattacaccttacactcaatgtcc 269  Q
    | ||||| ||||||||||| ||||| || | ||| ||||||||||||||||| ||||||||||  |||||| || |||||||||||||||||    
T  111141 aataaatacatagacaaactattagcatgaaccgacatctatatattcaaagtaacactcttccctgcaatcaccccttacactcaatgtcc 111232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 107 - 436
Target Start/End: Original strand, 2043050 - 2043372
Alignment:
Q  107 taccttgaaagaaaaagagtttgttgaatagggttgtgaaatgaatgaaaccctaaatgaaatcatgatctattaaatgcatagacaaaccattagtata 206  Q
    ||||||||||||||| ||||||||||| ||||||||  |||||||||||| ||||||||||| ||||| ||    ||||||||||||| ||||||| ||     
T  2043050 taccttgaaagaaaatgagtttgttgactagggttggcaaatgaatgaaaacctaaatgaaaccatgacct----aatgcatagacaagccattagcatg 2043145  T
Q  207 agccggcatctatatattcaaagcaacactcttcaatgcaattacaccttacactcaatgtccatccattcaccatcacaacaattgtacattgaatttt 306  Q
    |  |  |||||||||||||||||||| |||||||  |||||| ||| || ||||| |||||   |||  || |||||||||||||| ||| ||||||||     
T  2043146 aatcttcatctatatattcaaagcaatactcttcggtgcaatcacatctaacactaaatgtttctcc-ctctccatcacaacaattatactttgaatttg 2043244  T
Q  307 tatatcaaaaattataggtccgtttgtccttctagtatgtttaccataatttgatcttaacgttacatttttattttcaagattgtaggtgactataata 406  Q
    ||||| |||||||| |  ||  | ||| ||  || ||||||| |||||||| |||   || |||| |||||| |||| |  ||| |||||||  |||| |    
T  2043245 tatataaaaaattacatatctatatgttct--taatatgttttccataattcgattagaaggttatatttttctttttactattataggtgatcataaca 2043342  T
Q  407 taacataatcatttcacatctagtctcaaa 436  Q
    ||||||||| ||||||||||||| ||||||    
T  2043343 taacataattatttcacatctaggctcaaa 2043372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 6 - 42
Target Start/End: Original strand, 18871536 - 18871572
Alignment:
Q  6 tatattgttttgttcacaccaaaaataaggaaaaata 42  Q
    |||||||||||||||||||||||||||||||||||||    
T  18871536 tatattgttttgttcacaccaaaaataaggaaaaata 18871572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 6 - 43
Target Start/End: Original strand, 2042877 - 2042914
Alignment:
Q  6 tatattgttttgttcacaccaaaaataaggaaaaataa 43  Q
    |||||||||||||||||| |||||||||||||||||||    
T  2042877 tatattgttttgttcacatcaaaaataaggaaaaataa 2042914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 449 - 521
Target Start/End: Original strand, 6403987 - 6404060
Alignment:
Q  449 tggaaatgaaatatgcaacaaaatttcaattagatactaaaactatta-aagtttccatccaatgaagcatgta 521  Q
    |||||||||| ||||||||| ||||||||||| |||||| |||||||| |||||| | || ||| |||||||||    
T  6403987 tggaaatgaagtatgcaacacaatttcaattacatactataactattagaagttttcgtcaaataaagcatgta 6404060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 6 - 42
Target Start/End: Original strand, 133719 - 133755
Alignment:
Q  6 tatattgttttgttcacaccaaaaataaggaaaaata 42  Q
    ||||||||||| |||||||||||||||||||||||||    
T  133719 tatattgttttattcacaccaaaaataaggaaaaata 133755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 6 - 43
Target Start/End: Original strand, 110974 - 111011
Alignment:
Q  6 tatattgttttgttcacaccaaaaataaggaaaaataa 43  Q
    |||| ||||||||||| |||||||||||||||||||||    
T  110974 tatactgttttgttcataccaaaaataaggaaaaataa 111011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 449 - 525
Target Start/End: Complemental strand, 2931759 - 2931682
Alignment:
Q  449 tggaaatgaaatatgcaacaaaatttcaattagatactaaaactatta-aagtttccatccaatgaagcatgtataaa 525  Q
    |||||||||| ||||||||| ||||||||||| |||||| |||||||| ||||||  ||||||| |||||||||||||    
T  2931759 tggaaatgaagtatgcaacacaatttcaattacatactataactattagaagtttttatccaataaagcatgtataaa 2931682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 459 - 496
Target Start/End: Original strand, 27136330 - 27136367
Alignment:
Q  459 atatgcaacaaaatttcaattagatactaaaactatta 496  Q
    |||||||||| ||||||||| |||||||||||||||||    
T  27136330 atatgcaacacaatttcaatcagatactaaaactatta 27136367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 449 - 521
Target Start/End: Complemental strand, 39073972 - 39073899
Alignment:
Q  449 tggaaatgaaatatgcaacaaaatttcaattagatactaaaactatta-aagtttccatccaatgaagcatgta 521  Q
    |||||||||| ||||||||| ||||||||||| ||| || ||| |||| |||||| |||||||| |||||||||    
T  39073972 tggaaatgaactatgcaacacaatttcaattacatattagaacgattacaagtttacatccaataaagcatgta 39073899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 451 - 521
Target Start/End: Complemental strand, 1613016 - 1612945
Alignment:
Q  451 gaaatgaaatatgcaacaaaatttcaattagatactaaaactatta-aagtttccatccaatgaagcatgta 521  Q
    |||||||| | ||||||| ||||| ||||| |||||||||| |||| || |||||||||||| |||||||||    
T  1613016 gaaatgaactgtgcaacacaattttaattacatactaaaacaattacaaatttccatccaataaagcatgta 1612945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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