View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3425_low_40 (Length: 291)
Name: NF3425_low_40
Description: NF3425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3425_low_40 |
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Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 15 - 275
Target Start/End: Original strand, 27563324 - 27563584
Alignment:
| Q |
15 |
atcagagtggaaaatcccaagcataaatttgaagttagcaagtatgtcaacatagtaataatagaaagaaatttttgaataaaaatgcagcttctccttc |
114 |
Q |
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| T |
27563324 |
atcagagcggaaaatcccaagcataaatttgaagttagcaagtatgtcaacacggtaataatagaaagaaatttttgaataaaaatgcagcttctccttc |
27563423 |
T |
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| Q |
115 |
gaaaacatcaaatgtaaatttgtaatatcatagtataagtaagatgatgcaagttgtcgaagttgagaactatgaaggaggaggattggaatcagggttt |
214 |
Q |
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| T |
27563424 |
aaaaacgtcaaatgtaaatttgtaatatcatagtataagtaagatgatgtaagttgttgaagttgagaaccatgaaggaggaggattggaatcagggttt |
27563523 |
T |
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| Q |
215 |
taaatttagtgtagttgggaatctgtgacttaacggatactatgatttatgtggtgaaatt |
275 |
Q |
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| T |
27563524 |
taaatccagtgtagttggaaatttgtgacttaacggatactatgatttatgtggtgaaatt |
27563584 |
T |
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