View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3425_low_46 (Length: 279)
Name: NF3425_low_46
Description: NF3425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3425_low_46 |
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Alignment Details
Target: chr3 (Bit Score: 160; Significance: 3e-85; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 27 - 190
Target Start/End: Complemental strand, 23300945 - 23300782
Alignment:
| Q |
27 |
taacaattttgcccactacgtttaacacattttgcaaaagtaatcccttcctttgagttttaccacgtcgatgcttatgtggacacattcttagataaca |
126 |
Q |
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| T |
23300945 |
taacaattttgcccactacgtttaacacattttgcaaaagtaatcccttcctttgagttttaccacgtcgatgcttatgtggacacattcttagataaca |
23300846 |
T |
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| Q |
127 |
aggacgtcatgtgtgtattattttcttttaagattaaaaaaatatccaactcatcaatgattac |
190 |
Q |
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| T |
23300845 |
aggatgtcatgtgtgtattattttcttttaagattaaaaaaatatccaactcatcaatgattac |
23300782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 28 - 189
Target Start/End: Complemental strand, 24198589 - 24198429
Alignment:
| Q |
28 |
aacaattttgcccactacgtttaacacattttgcaaaagtaatcccttcctttgagttttaccacgtcgatgcttatgtggacacattcttagataacaa |
127 |
Q |
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| T |
24198589 |
aacaattttgccctctatgtatagcccattttgcaaaagtggtctcttcctttgaattttaccaagtcaatgattatgtggacacattcttagatgacag |
24198490 |
T |
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| Q |
128 |
ggacgtcatgtgtgtattattttcttttaagattaaaaaaatatccaactcatcaatgatta |
189 |
Q |
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| T |
24198489 |
ggacgtcatgtgtg-attattttattttaaaattaaaagaaaatccaactcatcaatgatta |
24198429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 28 - 189
Target Start/End: Complemental strand, 16912395 - 16912235
Alignment:
| Q |
28 |
aacaattttgcccactacgtttaacacattttgcaaaagtaatcccttcctttgagttttaccacgtcgatgcttatgtggacacattcttagataacaa |
127 |
Q |
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| T |
16912395 |
aacaattttgccctctatgtatagcccattttgcaaaagtggtatcttcctttgaattttaccaagtcaatgattatgtggacatattcttagatgacag |
16912296 |
T |
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| Q |
128 |
ggacgtcatgtgtgtattattttcttttaagattaaaaaaatatccaactcatcaatgatta |
189 |
Q |
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| T |
16912295 |
ggacgtcatgtgtg-attattttattttaaaattaaaagaaaatccaactcatcaatgatta |
16912235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 27 - 189
Target Start/End: Original strand, 24197359 - 24197521
Alignment:
| Q |
27 |
taacaattttgcccactacgtttaacacattttgcaaaagtaatcccttcctttgagttttaccacgtcgatgcttatgtggacacattcttagataaca |
126 |
Q |
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| T |
24197359 |
taacaattttgtcctttatgtttagccccttttgcaaaagtggccccttcctttcattttgatcaagtcaatgcttatgtggacacattcttagatgact |
24197458 |
T |
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| Q |
127 |
aggacgtcatgtgtgtattattttcttttaagattaaaaaaatatccaactcatcaatgatta |
189 |
Q |
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| T |
24197459 |
aggacgccatgtatgtatttttttattttaaaattaaaagaaaatccaactcatcaatgatta |
24197521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 27 - 189
Target Start/End: Original strand, 16911165 - 16911327
Alignment:
| Q |
27 |
taacaattttgcccactacgtttaacacattttgcaaaagtaatcccttcctttgagttttaccacgtcgatgcttatgtggacacattcttagataaca |
126 |
Q |
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| T |
16911165 |
taacaattttgtcctttatgtttagccccttttgcaaaagtggcccattcctttcattttgatcaagtcaatgcttatgtggacaaattcttagatgact |
16911264 |
T |
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| Q |
127 |
aggacgtcatgtgtgtattattttcttttaagattaaaaaaatatccaactcatcaatgatta |
189 |
Q |
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| T |
16911265 |
aggacgccatgtatgtatttttttattttaaaattaaaagaaaatccaactcatcaatgatta |
16911327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 71 - 189
Target Start/End: Original strand, 23299773 - 23299890
Alignment:
| Q |
71 |
cccttcctttgagttttaccacgtcgatgcttatgtggacacattcttagataacaaggacgtcatgtgtgtattattttcttttaagattaaaaaaata |
170 |
Q |
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| T |
23299773 |
cccttcctttgattttgactaagtcaattcttatgtggacacattctcagatgactaggacgccatgtatgtatt-ttttattttaaaattaaaagaaaa |
23299871 |
T |
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| Q |
171 |
tccaactcatcaatgatta |
189 |
Q |
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| T |
23299872 |
tccaactcatcaatgatta |
23299890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 117
Target Start/End: Complemental strand, 1359418 - 1359374
Alignment:
| Q |
73 |
cttcctttgagttttaccacgtcgatgcttatgtggacacattct |
117 |
Q |
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| T |
1359418 |
cttcctttgattttgaccaagtcgatgcttatgtggacacattct |
1359374 |
T |
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