View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3425_low_47 (Length: 271)
Name: NF3425_low_47
Description: NF3425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3425_low_47 |
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| [»] scaffold0050 (1 HSPs) |
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Alignment Details
Target: scaffold0050 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: scaffold0050
Description:
Target: scaffold0050; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 17350 - 17605
Alignment:
| Q |
1 |
gcacacgtcacaagttgacacaggaagtgacattctttgggtgaattgtgtaggctgcacagcatgttccaagcaactaaacttttttaatattcatgct |
100 |
Q |
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| T |
17350 |
gcacacgtcacaagttgacaaaagaagtgacattctttgggtgaattgtgtaggctgcacagcatgtcccaagcaactaaacttttttaatattcatgct |
17449 |
T |
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| Q |
101 |
tt-ctggttgaaatataagaatattgagagttgtagctttaattatcatgttgcagatggatttaaccctctatgaccctaacggctcgaaaacttcaaa |
199 |
Q |
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| T |
17450 |
tttctggttgaaatataagaatattgagagttgctgctttaattatcatgttgcagatggatttaaccctctatgaccctaacggctcgaaaacttcaaa |
17549 |
T |
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| Q |
200 |
tgtcgttccttgtggtgacagtttctgcaccgacacatattctggtataatttctg |
255 |
Q |
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| T |
17550 |
tgtcgttccttgtggtgacagtttctgcaccgacgcatattctggtccaatttctg |
17605 |
T |
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Target: chr7 (Bit Score: 153; Significance: 4e-81; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 75 - 255
Target Start/End: Complemental strand, 30500839 - 30500659
Alignment:
| Q |
75 |
aactaaacttttttaatattcatgctttctggttgaaatataagaatattgagagttgtagctttaattatcatgttgcagatggatttaaccctctatg |
174 |
Q |
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| T |
30500839 |
aactaaacttttttaatattcatgctttctggttgaaatataagaatattgagagttgctgctttaattatcatgttgcagatggatttaaccctctatg |
30500740 |
T |
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| Q |
175 |
accctaacggctcgaaaacttcaaatgtcgttccttgtggtgacagtttctgcaccgacacatattctggtataatttctg |
255 |
Q |
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| T |
30500739 |
accctaacggctcgaaaacttcaaatgcggttccttgtggtgacggtttctgcaccgacacatattctggtccaatttctg |
30500659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 10 - 73
Target Start/End: Complemental strand, 30500929 - 30500866
Alignment:
| Q |
10 |
acaagttgacacaggaagtgacattctttgggtgaattgtgtaggctgcacagcatgttccaag |
73 |
Q |
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| T |
30500929 |
acaagttgacacaggaagtgacattctttgggtgaattgtgcaggctgcacagcatgtcccaag |
30500866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 51
Target Start/End: Original strand, 35017938 - 35017978
Alignment:
| Q |
11 |
caagttgacacaggaagtgacattctttgggtgaattgtgt |
51 |
Q |
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| T |
35017938 |
caagttgatacaggaagtgatattctgtgggtgaattgtgt |
35017978 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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