View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3425_low_49 (Length: 266)
Name: NF3425_low_49
Description: NF3425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3425_low_49 |
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Alignment Details
Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 17 - 253
Target Start/End: Original strand, 8284966 - 8285202
Alignment:
| Q |
17 |
atgttgatgtacctctagttaatcatgagatcaccatgaactatggaagtaaaagtggaattgcctcaatgaatcaccgatatgatcaagagaagattca |
116 |
Q |
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| T |
8284966 |
atgttgatgtacctctagttaatcatgagatcaccatgaactatggaagtaaaagtggaattgcctcaatgaatcaccgatatgatcaagagaagattca |
8285065 |
T |
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| Q |
117 |
agaggaagcaatgaatatgattcacatgtaccagcaagacccacaacttaattttggtgttgctacaacatcaagcaatgatgatgagtcagttgatctt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8285066 |
agaggaagcaatgaatatgattcacatgtaccagcaagacccacaacttaattttggtgttgctacaacatcaagcaatgatgatgagtcagttgatctt |
8285165 |
T |
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| Q |
217 |
gctcctcttcctcctactaccattggtgcacctgatg |
253 |
Q |
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| T |
8285166 |
gctcctcttcctcctactaccattggtgcacctgatg |
8285202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 101 - 230
Target Start/End: Original strand, 34687150 - 34687276
Alignment:
| Q |
101 |
atcaagagaagattcaagaggaagcaatgaatatgattcacatgtaccagcaagacccacaacttaattttggtgttgctacaacatcaagcaatgatga |
200 |
Q |
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| T |
34687150 |
atcaagagaatattcaagaggaagcgatgaatatgatgcacatgcaccaacaagacccacaatttaattttggtgtcacgacaacttcaagtaatgatga |
34687249 |
T |
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| Q |
201 |
tgagtcagttgatcttgctcctcttcctcc |
230 |
Q |
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| T |
34687250 |
t---tcaactgatcttgctcctctacctcc |
34687276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 17 - 230
Target Start/End: Original strand, 34694992 - 34695205
Alignment:
| Q |
17 |
atgttgatgtacctctagttaatcatgagatcaccatgaactatggaagtaaaagtggaattgcctcaatgaatcaccgatatgatcaagagaagattca |
116 |
Q |
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|||||||| | |||||| ||||| |||| | || |||||||||||||| |||| |||||| |||||| ||| ||| | |||||||||||| ||||| |
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| T |
34694992 |
atgttgatctgcctctacttaattatgataacatcatgaactatggaaacaaaaatggaatctgctcaatcaatgacctttttgatcaagagaatattca |
34695091 |
T |
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| Q |
117 |
agaggaagcaatgaatatgattcacatgtaccagcaagacccacaacttaattttggtgttgctacaacatcaagcaatgatgatgagtcagttgatctt |
216 |
Q |
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|||||| | || ||||||| || ||| | || |||||||||||||||||||||||||| | ||| | ||||| ||||||||| | ||| ||||||| |
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| T |
34695092 |
agaggagtcgattcatatgatgcatatgcatcaacaagacccacaacttaattttggtgtcacgacagcttcaagtaatgatgatcattcaactgatctt |
34695191 |
T |
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| Q |
217 |
gctcctcttcctcc |
230 |
Q |
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|||||||| ||||| |
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| T |
34695192 |
gctcctctccctcc |
34695205 |
T |
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