View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3425_low_50 (Length: 265)

Name: NF3425_low_50
Description: NF3425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3425_low_50
NF3425_low_50
[»] chr8 (8 HSPs)
chr8 (1-219)||(2116266-2116491)
chr8 (161-215)||(3955826-3955880)
chr8 (161-215)||(19439585-19439639)
chr8 (161-215)||(19575734-19575788)
chr8 (161-215)||(15358119-15358173)
chr8 (161-215)||(13636572-13636626)
chr8 (161-215)||(13736985-13737039)
chr8 (170-215)||(33099137-33099182)
[»] chr7 (3 HSPs)
chr7 (1-219)||(45657460-45657682)
chr7 (161-215)||(18534805-18534859)
chr7 (161-214)||(27542191-27542244)
[»] chr4 (8 HSPs)
chr4 (57-219)||(22422934-22423099)
chr4 (57-201)||(39843341-39843487)
chr4 (161-215)||(40547116-40547170)
chr4 (161-219)||(8720387-8720445)
chr4 (174-214)||(33633615-33633655)
chr4 (58-99)||(8720281-8720322)
chr4 (170-215)||(44937575-44937620)
chr4 (175-215)||(41327088-41327128)
[»] chr3 (4 HSPs)
chr3 (57-219)||(52796515-52796680)
chr3 (57-219)||(52099516-52099689)
chr3 (175-215)||(43659575-43659615)
chr3 (140-217)||(24696241-24696319)
[»] chr6 (2 HSPs)
chr6 (57-219)||(251981-252146)
chr6 (73-219)||(5045650-5045799)
[»] chr1 (4 HSPs)
chr1 (57-219)||(10615988-10616152)
chr1 (57-218)||(11240417-11240580)
chr1 (57-121)||(2167603-2167667)
chr1 (149-215)||(45337954-45338020)
[»] chr2 (4 HSPs)
chr2 (57-219)||(27869149-27869314)
chr2 (57-219)||(37472401-37472578)
chr2 (174-215)||(9224650-9224691)
chr2 (174-215)||(9272519-9272560)
[»] scaffold0072 (1 HSPs)
scaffold0072 (73-219)||(46749-46898)


Alignment Details
Target: chr8 (Bit Score: 156; Significance: 6e-83; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 2116491 - 2116266
Alignment:
Q  1 tataaaagtactacaacaaagtgaatagattgaaaatataatttactnnnnnnnnn-----ttgagaatataatattttaatgcaagggcaataatggaa 95  Q
    |||||||||||||||||||||||||||||||||||||||||||||||              |||||||||||||||||||||||||||||||||||||||    
T  2116491 tataaaagtactacaacaaagtgaatagattgaaaatataatttactcaaaaataaataaattgagaatataatattttaatgcaagggcaataatggaa 2116392  T
Q  96 caacaaagtgaatagtcttctctctc--atcttttctctattgcgaggagaaaccaaaaatgatggatcccactactttttaatctctattccctatttc 193  Q
    ||||||||||||||||||||||||||  || | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  2116391 caacaaagtgaatagtcttctctctctcatttcttctctattgcgaggagaaaccaaaaatgatggatcccactactttttaatctctcttccctatttc 2116292  T
Q  194 tcttcattccaaacaagagaaagttg 219  Q
    ||||||||||||||||||||||||||    
T  2116291 tcttcattccaaacaagagaaagttg 2116266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 161 - 215
Target Start/End: Original strand, 3955826 - 3955880
Alignment:
Q  161 tcccactactttttaatctctattccctatttctcttcattccaaacaagagaaa 215  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  3955826 tcccactactttttaatctctcttccctatttctcttcattccaaacaagagaaa 3955880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 161 - 215
Target Start/End: Original strand, 19439585 - 19439639
Alignment:
Q  161 tcccactactttttaatctctattccctatttctcttcattccaaacaagagaaa 215  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  19439585 tcccactactttttaatctctcttccctatttctcttcattccaaacaagagaaa 19439639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 161 - 215
Target Start/End: Original strand, 19575734 - 19575788
Alignment:
Q  161 tcccactactttttaatctctattccctatttctcttcattccaaacaagagaaa 215  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  19575734 tcccactactttttaatctctcttccctatttctcttcattccaaacaagagaaa 19575788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 161 - 215
Target Start/End: Complemental strand, 15358173 - 15358119
Alignment:
Q  161 tcccactactttttaatctctattccctatttctcttcattccaaacaagagaaa 215  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||| |||||    
T  15358173 tcccactactttttaatctctcttccctatttctcttcattccaaacaaaagaaa 15358119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 161 - 215
Target Start/End: Complemental strand, 13636626 - 13636572
Alignment:
Q  161 tcccactactttttaatctctattccctatttctcttcattccaaacaagagaaa 215  Q
    ||||||||||||||||| ||| || ||||||||||||||||||||||||||||||    
T  13636626 tcccactactttttaatatctctttcctatttctcttcattccaaacaagagaaa 13636572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 161 - 215
Target Start/End: Complemental strand, 13737039 - 13736985
Alignment:
Q  161 tcccactactttttaatctctattccctatttctcttcattccaaacaagagaaa 215  Q
    ||||||||||||||||| ||| || ||||||||||||||||||||||||||||||    
T  13737039 tcccactactttttaatatctctttcctatttctcttcattccaaacaagagaaa 13736985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 170 - 215
Target Start/End: Complemental strand, 33099182 - 33099137
Alignment:
Q  170 tttttaatctctattccctatttctcttcattccaaacaagagaaa 215  Q
    |||| ||||||| |||||||||||||| ||||||||||||||||||    
T  33099182 ttttaaatctctcttccctatttctctgcattccaaacaagagaaa 33099137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 138; Significance: 3e-72; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 45657682 - 45657460
Alignment:
Q  1 tataaaagtactacaacaaagtgaatagattgaaaatataatttactnnnnnnnnn--ttgagaatataatattttaatgcaagggcaataatggaacaa 98  Q
    |||||||||||||||| |||||||||||||||| |||||||||| ||           ||||||||||||||||||||||||||||||||||||||||||    
T  45657682 tataaaagtactacaataaagtgaatagattgagaatataatttgctcaaaaaaaaatttgagaatataatattttaatgcaagggcaataatggaacaa 45657583  T
Q  99 caaagtgaatagtcttctctctc--atcttttctctattgcgaggagaaaccaaaaatgatggatcccactactttttaatctctattccctatttctct 196  Q
    |||||||||||||||||||||||  || | |||| |||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||    
T  45657582 caaagtgaatagtcttctctctcccatttcttctatattgcaaggagaaaccaaaaatgatgggtcccactactttttaatctctcttccctatttctct 45657483  T
Q  197 tcattccaaacaagagaaagttg 219  Q
    |||||||||||||||||||||||    
T  45657482 tcattccaaacaagagaaagttg 45657460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 161 - 215
Target Start/End: Original strand, 18534805 - 18534859
Alignment:
Q  161 tcccactactttttaatctctattccctatttctcttcattccaaacaagagaaa 215  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||||||||||    
T  18534805 tcccactattttttaatctctcttccctatttctcttcattccaaacaagagaaa 18534859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 161 - 214
Target Start/End: Complemental strand, 27542244 - 27542191
Alignment:
Q  161 tcccactactttttaatctctattccctatttctcttcattccaaacaagagaa 214  Q
    ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||    
T  27542244 tcccattactttttaatctctcttccctatttctcttcattccaaacaagagaa 27542191  T

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Target: chr4 (Bit Score: 127; Significance: 1e-65; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 57 - 219
Target Start/End: Original strand, 22422934 - 22423099
Alignment:
Q  57 ttgagaatataatattttaatgcaagggcaataatggaacaacaaagtgaatagtcttctctctcatctt--ttctctattgcgaggagaaaccaaaaa- 153  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||  |||||||||| ||||||||||||||||     
T  22422934 ttgagaatataatattttaatgcaagggcaataatggaacaacaaagtgaatagtcttctctctcccctttcttctctattgtgaggagaaaccaaaaag 22423033  T
Q  154 tgatggatcccactactttttaatctctattccctatttctcttcattccaaacaagagaaagttg 219  Q
    |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  22423034 tgatggttcccactactttttaatctctcttccctatttctcttcattccaaacaagagaaagttg 22423099  T

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Target: chr4; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 57 - 201
Target Start/End: Complemental strand, 39843487 - 39843341
Alignment:
Q  57 ttgagaatataatattttaatgcaagggcaataatggaacaacaaagtgaatagtcttctctct--catcttttctctattgcgaggagaaaccaaaaa- 153  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| | |||||| ||| ||||||||||||||||     
T  39843487 ttgagaatataatattttaatgcaagggcaataatggaacaacaaagtgaatagtcttctctctcccatttcttctctgttgtgaggagaaaccaaaaag 39843388  T
Q  154 tgatggatcccactactttttaatctctattccctatttctcttcatt 201  Q
    |||||| ||||||||||||||||||||| ||||||||||||| |||||    
T  39843387 tgatgg-tcccactactttttaatctctcttccctatttctcctcatt 39843341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 161 - 215
Target Start/End: Complemental strand, 40547170 - 40547116
Alignment:
Q  161 tcccactactttttaatctctattccctatttctcttcattccaaacaagagaaa 215  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  40547170 tcccactactttttaatctctcttccctatttctcttcattccaaacaagagaaa 40547116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 161 - 219
Target Start/End: Original strand, 8720387 - 8720445
Alignment:
Q  161 tcccactactttttaatctctattccctatttctcttcattccaaacaagagaaagttg 219  Q
    ||||||||||||| ||||||| || |||||||||||||||||||||| |||||||||||    
T  8720387 tcccactacttttaaatctctctttcctatttctcttcattccaaactagagaaagttg 8720445  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 214
Target Start/End: Original strand, 33633615 - 33633655
Alignment:
Q  174 taatctctattccctatttctcttcattccaaacaagagaa 214  Q
    |||||||| |||||||||||||| |||||||||||||||||    
T  33633615 taatctctcttccctatttctctgcattccaaacaagagaa 33633655  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 58 - 99
Target Start/End: Original strand, 8720281 - 8720322
Alignment:
Q  58 tgagaatataatattttaatgcaagggcaataatggaacaac 99  Q
    |||||||||||||||| ||| ||||||||| |||||||||||    
T  8720281 tgagaatataatatttcaatacaagggcaaaaatggaacaac 8720322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 170 - 215
Target Start/End: Original strand, 44937575 - 44937620
Alignment:
Q  170 tttttaatctctattccctatttctcttcattccaaacaagagaaa 215  Q
    |||| ||||||| |||||||||||| | ||||||||||||||||||    
T  44937575 ttttaaatctctcttccctatttctttgcattccaaacaagagaaa 44937620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 215
Target Start/End: Original strand, 41327088 - 41327128
Alignment:
Q  175 aatctctattccctatttctcttcattccaaacaagagaaa 215  Q
    ||||||| |||||||||||||| ||||| ||||||||||||    
T  41327088 aatctctcttccctatttctctgcattctaaacaagagaaa 41327128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 119; Significance: 7e-61; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 57 - 219
Target Start/End: Complemental strand, 52796680 - 52796515
Alignment:
Q  57 ttgagaatataatattttaatgcaagggcaataatggaacaacaaagtgaatagtcttctctct--catcttttctctattgcgaggagaaaccaaaaa- 153  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| | |||||||||| ||||||||||||||||     
T  52796680 ttgagaatataatattttaatgcaagggcaataatggaacaacaaagtgaatagtcttctctctcccatttcttctctattgtgaggagaaaccaaaaag 52796581  T
Q  154 tgatggatcccactactttttaatctctattccctatttctcttcattccaaacaagagaaagttg 219  Q
    |||||| ||||||||||||||||||||| |||||||||||||||||||||||||  ||||||||||    
T  52796580 tgatgggtcccactactttttaatctctcttccctatttctcttcattccaaactggagaaagttg 52796515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 57 - 219
Target Start/End: Complemental strand, 52099689 - 52099516
Alignment:
Q  57 ttgagaatataatattttaatgcaagggcaataatggaacaacaaagtgaatagtcttctctctc--atcttttctctattgcg--------aggagaaa 146  Q
    |||| |||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||  || | |||||||||           | ||||||    
T  52099689 ttgaaaatataatattttaatgcaagggcaataaataaacaacaaagtgaatagtcttctctctctcatttcttctctattttcttctctaaaagagaaa 52099590  T
Q  147 ccaaaaa-tgatggatcccactactttttaatctctattccctatttctcttcattccaaacaagagaaagttg 219  Q
    ||||||| |||||||||| ||||||||||||||||| || ||||||||||| ||||| ||||||||||||||||    
T  52099589 ccaaaaagtgatggatcctactactttttaatctctctttcctatttctctccattctaaacaagagaaagttg 52099516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 215
Target Start/End: Original strand, 43659575 - 43659615
Alignment:
Q  175 aatctctattccctatttctcttcattccaaacaagagaaa 215  Q
    ||||||| |||||||||||||| ||||||||||||||||||    
T  43659575 aatctctcttccctatttctctgcattccaaacaagagaaa 43659615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 217
Target Start/End: Original strand, 24696241 - 24696319
Alignment:
Q  140 ggagaaaccaaaaa-tgatggatcccactactttttaatctctattccctatttctcttcattccaaacaagagaaagt 217  Q
    |||||||||||||| || ||| |||||| | |||| ||||||| |||| ||||| ||| | ||||||||||||||||||    
T  24696241 ggagaaaccaaaaagtggtgggtcccacaatttttcaatctctcttccatatttttctcctttccaaacaagagaaagt 24696319  T

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Target: chr6 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 57 - 219
Target Start/End: Original strand, 251981 - 252146
Alignment:
Q  57 ttgagaatataatattttaatgcaagggcaataatggaacaacaaagtgaatagtcttctctctcatctt--ttctctattgcgaggagaaaccaaaaa- 153  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||  |||||||||| |||||| |||||||||     
T  251981 ttgagaatataatattttaatgcaagggcaataatggaacaacaaagtgaatagtcttctctctcccctttcttctctattgtgaggagcaaccaaaaag 252080  T
Q  154 tgatggatcccactactttttaatctctattccctatttctcttcattccaaacaagagaaagttg 219  Q
    |||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||| |||||||    
T  252081 tgatgggtcccattactttttaatctctcttccctatttctcttcattccaaacaagataaagttg 252146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 73 - 219
Target Start/End: Original strand, 5045650 - 5045799
Alignment:
Q  73 ttaatgcaagggcaataatggaacaacaaagtgaatagtcttctctctcatcttt--tctctattgcgaggagaaaccaaaaa-tgatggatcccactac 169  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||  ||||  |||| |||| ||| |||||||||||| |||||| |||||||||    
T  5045650 ttaatgcaacggcaataatggaacaacaaagtgaatagtcttctctctcccctttcttctcgattgtgagaagaaaccaaaaagtgatgggtcccactac 5045749  T
Q  170 tttttaatctctattccctatttctcttcattccaaacaagagaaagttg 219  Q
    |||||||||||| |||||||||||||| ||||||||||||||||||||||    
T  5045750 tttttaatctctcttccctatttctctccattccaaacaagagaaagttg 5045799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 111; Significance: 4e-56; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 57 - 219
Target Start/End: Complemental strand, 10616152 - 10615988
Alignment:
Q  57 ttgagaatataatattttaatgcaagggcaataatggaacaacaaagtgaatagtcttctctct--catcttttctctattgcgaggagaaaccaaaaa- 153  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||  ||| | ||||||| || ||||||||||||||||     
T  10616152 ttgagaatataatattttaatgcaagggcaataatgaaacaacaaagtgaatagtcttctctctcccatttcttctcta-tgtgaggagaaaccaaaaag 10616054  T
Q  154 tgatggatcccactactttttaatctctattccctatttctcttcattccaaacaagagaaagttg 219  Q
    |||||| ||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||    
T  10616053 tgatgggtcccactactttttaatctctcttccctatttctcttcatttcaaacaagagaaagttg 10615988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 57 - 218
Target Start/End: Complemental strand, 11240580 - 11240417
Alignment:
Q  57 ttgagaatataatattttaatgcaagggcaataatggaacaacaaagtgaatagtcttctctctcatctt--ttctctattgcgaggagaaaccaaaaat 154  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||  |||  ||||||| || ||||||||||||||  |    
T  11240580 ttgagaatataatattttaatgcaagggcaataatggaacaacaaagtgaatagtgttctctctctcctttcttctctactgtgaggagaaaccaaatgt 11240481  T
Q  155 gatggatcccactactttttaatctctattccctatttctcttcattccaaacaagagaaagtt 218  Q
    | | | |||||||| |||||||||||| |||| ||||||||||||||| |||||||||||||||    
T  11240480 ggtaggtcccactattttttaatctctcttccttatttctcttcattctaaacaagagaaagtt 11240417  T

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Target: chr1; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 57 - 121
Target Start/End: Complemental strand, 2167667 - 2167603
Alignment:
Q  57 ttgagaatataatattttaatgcaagggcaataatggaacaacaaagtgaatagtcttctctctc 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  2167667 ttgagaatataatattttaatgcaagggcaataatggaacaacaaagtgaatagtattctgtctc 2167603  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 215
Target Start/End: Original strand, 45337954 - 45338020
Alignment:
Q  149 aaaaatgatggatcccactactttttaatctctattccctatttctcttcattccaaacaagagaaa 215  Q
    ||||||||||| ||| || |||||||||||||| ||| |||| | ||| |||||||||||| |||||    
T  45337954 aaaaatgatgggtcctacaactttttaatctctcttctctatatttctgcattccaaacaaaagaaa 45338020  T

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Target: chr2 (Bit Score: 107; Significance: 1e-53; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 57 - 219
Target Start/End: Original strand, 27869149 - 27869314
Alignment:
Q  57 ttgagaatataatattttaatgcaagggcaataatggaacaacaaagtgaatagtcttctctctcatctt--ttctctattgcgaggagaaaccaaaaa- 153  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||  |||||||||| |||||||||  |||||     
T  27869149 ttgagaatataatattttaatgcaagggcaataatggaacaacaaagtgaatagtcttctctctcccctttcttctctattgtgaggagaaataaaaaag 27869248  T
Q  154 tgatggatcccactactttttaatctctattccctatttctcttcattccaaacaagagaaagttg 219  Q
    | |||| ||||||||||||||||||||| ||||||||||||||||||| ||||||| |||||||||    
T  27869249 taatgggtcccactactttttaatctctcttccctatttctcttcatttcaaacaatagaaagttg 27869314  T

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Target: chr2; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 57 - 219
Target Start/End: Original strand, 37472401 - 37472578
Alignment:
Q  57 ttgagaatataatattttaatgcaagggcaataatggaacaacaaagtgaatagtcttctctctcatcttt--------------tctctattgcgagga 142  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||  ||||              ||||||||| |||||    
T  37472401 ttgagaatataatattttaatgcaagggcaacaatggaacaacaaagtgaatagtcttctgtctcccctttcttctctattttcttctctattgtgagga 37472500  T
Q  143 gaaaccaaaaa-tgatggatcccactactttttaatctctattccctatttctcttcattccaaacaagagaaagttg 219  Q
    ||||||||||| |||||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||||||    
T  37472501 gaaaccaaaaagtgatggatcccattactttttaatctctatttcctatttctcttcgttccaaacaagagaaagttg 37472578  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 174 - 215
Target Start/End: Complemental strand, 9224691 - 9224650
Alignment:
Q  174 taatctctattccctatttctcttcattccaaacaagagaaa 215  Q
    |||||||| |||||||||||||| ||||| ||||||||||||    
T  9224691 taatctctcttccctatttctctgcattctaaacaagagaaa 9224650  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 174 - 215
Target Start/End: Complemental strand, 9272560 - 9272519
Alignment:
Q  174 taatctctattccctatttctcttcattccaaacaagagaaa 215  Q
    |||||||| |||||||||||||| |||| |||||||||||||    
T  9272560 taatctctcttccctatttctctgcatttcaaacaagagaaa 9272519  T

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Target: scaffold0072 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 73 - 219
Target Start/End: Original strand, 46749 - 46898
Alignment:
Q  73 ttaatgcaagggcaataatggaacaacaaagtgaatagtcttctctctcatcttt--tctctattgcgaggagaaaccaaaaa-tgatggatcccactac 169  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||  ||||  ||||||||| |||||||||||||||| |||||| |||||||||    
T  46749 ttaatgcaacggcaataatggaacaacaaagtgaatagtcttctctctcccctttcttctctattgtgaggagaaaccaaaaagtgatgggtcccactac 46848  T
Q  170 tttttaatctctattccctatttctcttcattccaaacaagagaaagttg 219  Q
    |||||||||||| |||||||||||||| ||||||||||||||||||||||    
T  46849 tttttaatctctcttccctatttctctccattccaaacaagagaaagttg 46898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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