View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3425_low_52 (Length: 263)
Name: NF3425_low_52
Description: NF3425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3425_low_52 |
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Alignment Details
Target: chr3 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 41559997 - 41559761
Alignment:
| Q |
1 |
cttatatactggaccaaattttttattgaaaattttcctataaataacaccggagggagtatatgatatttagaatgaaattattgagaaaaattgaagt |
100 |
Q |
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| T |
41559997 |
cttatatattggaccaaattttttattgaaaatttttctataaataacaccggagggagtatatgatatttagaatgaaattattgagaaaaattgaagt |
41559898 |
T |
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| Q |
101 |
cctagagacgcaccaatccacgtggccgtgtatggcacaaggcaattaaggcatgtgtcattttgtgtagcaatgataccatatacgtatatatatatan |
200 |
Q |
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| T |
41559897 |
cct--agacgcaccaatccacgtggccgtgtatggcacaaggcaattaaggcatgtgtcattttctgtagcaatgataccat-tacgtatatatatat-- |
41559803 |
T |
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| Q |
201 |
nnnnnnnnnagtatatgtcatgtatcataatgtctaatatatcaat |
246 |
Q |
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| T |
41559802 |
----tttttagtatatgtcatgtatcataatgtctaatatatcaat |
41559761 |
T |
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Back To:
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Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 4641081 - 4641024
Alignment:
| Q |
1 |
cttatatactggaccaaattttttatt-gaaaattttcctataaataacaccggaggg |
57 |
Q |
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| T |
4641081 |
cttatatattggaccaaattttttttttgaaaattttcttataaataggaccggaggg |
4641024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 19780241 - 19780181
Alignment:
| Q |
1 |
cttatatactggaccaaattttttattgaaaattttcctataaataacaccggagggagta |
61 |
Q |
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| T |
19780241 |
cttatatataggaccaaatttttttttgaaaattttcttatatatagaatcggagggagta |
19780181 |
T |
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