View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3425_low_55 (Length: 254)
Name: NF3425_low_55
Description: NF3425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3425_low_55 |
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Alignment Details
Target: chr1 (Bit Score: 181; Significance: 7e-98; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 19 - 249
Target Start/End: Complemental strand, 30478865 - 30478627
Alignment:
| Q |
19 |
agttcattaatcagcatgcatgtaatg-------taattaattaattaatgatctgaaatacaccgtaactaaagtactaccaccattttcttaaagtac |
111 |
Q |
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| T |
30478865 |
agttcattaatcagcatgcatgtaattaattaattaattaattaattaatgatctgaaatacaccgtaactaaagtactaccaccattttcttaaagtac |
30478766 |
T |
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| Q |
112 |
tattcacaattttatctcttttaatatctgaattaagcttatctgaggaggattttacgctttaaatatctgcctccac-aagaattttgtatccaagtt |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |||| |||||| |
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| T |
30478765 |
tattcacaattttatctcttttaatatctgaattaagcttatctgaggaggattttacgctttaattatctgcctccacaaagaatttggtattcaagtt |
30478666 |
T |
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| Q |
211 |
ccttaaactctcctcttaattatataagttcatctcact |
249 |
Q |
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|||||||||||||||||||||||||||||| || ||||| |
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| T |
30478665 |
ccttaaactctcctcttaattatataagttgatttcact |
30478627 |
T |
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