View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3425_low_56 (Length: 253)
Name: NF3425_low_56
Description: NF3425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3425_low_56 |
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Alignment Details
Target: chr7 (Bit Score: 225; Significance: 1e-124; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 12 - 240
Target Start/End: Original strand, 27492518 - 27492746
Alignment:
| Q |
12 |
acagaccttagaattggaaagaattatgtgcctaattatacacctttggatcctgattactgtcctcctgaactatatgttctaccacaagaaacacaaa |
111 |
Q |
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| T |
27492518 |
acagaccttagaattggaaagaattatgtgcctaattatacacctttggatcctgattactgtcctcctgaactatatgttctaccacaagaaacacaaa |
27492617 |
T |
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| Q |
112 |
gtcttcctccagaaccaattgcagctttaatctcaccaatcttgtggcaggttttatttctgttatcctatttatataggcactgtttgggttatcagcg |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
27492618 |
gtcttcctccagaaccaattgcagctttaatctcaccaatcttgtggcaggttttatttctgttatcctatttatataggctctgtttgggttatcagcg |
27492717 |
T |
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| Q |
212 |
catatcatataagttcttatgtataaact |
240 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
27492718 |
catatcatataagttcttatgtataaact |
27492746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 78 - 185
Target Start/End: Original strand, 27507721 - 27507827
Alignment:
| Q |
78 |
cctgaactatatgttctaccacaagaaacacaaagtcttcctccagaaccaattgcagctttaatctcaccaatcttgtggcaggttttatttctgttat |
177 |
Q |
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|||||||| ||| |||||||||||||||||| ||||||||||||| | ||||||||||||||| | ||||| || ||||||||||| | | |||| |||| |
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| T |
27507721 |
cctgaactgtatcttctaccacaagaaacaccaagtcttcctccatagccaattgcagctttactttcacc-atattgtggcaggtctgacttcttttat |
27507819 |
T |
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| Q |
178 |
cctattta |
185 |
Q |
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|||||||| |
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| T |
27507820 |
cctattta |
27507827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 78 - 185
Target Start/End: Original strand, 27495246 - 27495351
Alignment:
| Q |
78 |
cctgaactatatgttctaccacaagaaacacaaagtcttcctccagaaccaattgcagctttaatctcaccaatcttgtggcaggttttatttctgttat |
177 |
Q |
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|||||||| ||| ||||||| |||||||||| || |||||||||| | ||||||||||||| | ||||||||| ||||||||||| | | ||| |||| |
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| T |
27495246 |
cctgaactgtatcttctaccgcaagaaacaccaaatcttcctccatagccaattgcagcttga--ctcaccaatattgtggcaggtctgacatcttttat |
27495343 |
T |
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| Q |
178 |
cctattta |
185 |
Q |
| |
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|||||||| |
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| T |
27495344 |
cctattta |
27495351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 78 - 185
Target Start/End: Original strand, 27501904 - 27502009
Alignment:
| Q |
78 |
cctgaactatatgttctaccacaagaaacacaaagtcttcctccagaaccaattgcagctttaatctcaccaatcttgtggcaggttttatttctgttat |
177 |
Q |
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|||||||| ||| ||||||| |||||||||| || |||||||||| | ||||||||||||| | ||||||||| ||||||||||| | | ||| |||| |
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| T |
27501904 |
cctgaactgtatcttctaccgcaagaaacaccaaatcttcctccatagccaattgcagcttga--ctcaccaatattgtggcaggtctgacatcttttat |
27502001 |
T |
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| Q |
178 |
cctattta |
185 |
Q |
| |
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|||||||| |
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| T |
27502002 |
cctattta |
27502009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 78 - 185
Target Start/End: Original strand, 27516696 - 27516801
Alignment:
| Q |
78 |
cctgaactatatgttctaccacaagaaacacaaagtcttcctccagaaccaattgcagctttaatctcaccaatcttgtggcaggttttatttctgttat |
177 |
Q |
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|||||||| ||| ||||||| |||||||||| || |||||||||| | ||||||||||||| | ||||||||| ||||||||||| | | ||| |||| |
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| T |
27516696 |
cctgaactgtatcttctaccgcaagaaacaccaaatcttcctccatagccaattgcagcttga--ctcaccaatattgtggcaggtctgacatcttttat |
27516793 |
T |
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| Q |
178 |
cctattta |
185 |
Q |
| |
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|||||||| |
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|
| T |
27516794 |
cctattta |
27516801 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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