View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3425_low_57 (Length: 252)
Name: NF3425_low_57
Description: NF3425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3425_low_57 |
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| [»] scaffold0459 (1 HSPs) |
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| [»] scaffold0366 (1 HSPs) |
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Alignment Details
Target: scaffold0459 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: scaffold0459
Description:
Target: scaffold0459; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 6 - 252
Target Start/End: Complemental strand, 5971 - 5725
Alignment:
| Q |
6 |
aggagcagagagtgagcaaccttttacaatcactctttgttggagtagcagtgtttgctatgcctgccataaaaatgataccaacttcagttttgtgggg |
105 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5971 |
aggagcaaagagtgagcaaccttttacaatcactctttgttggagtagcagtgtttgctatgcctgccataaaaatgataccaacttcagttttgtgggg |
5872 |
T |
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| Q |
106 |
atactttgcttacatggctattgatagtcttccagggaatcagttttgggaaaggatattgcttctttttgtaagacctagtagatggtacaagtaagtg |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5871 |
atactttgcttacatggctattgatagtcttccagggaatcagttttgggaaaggatattgcttctttttgtaagacctagtagatggtacaagtaagtg |
5772 |
T |
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| Q |
206 |
aaagttactttgatttcaccattttaacaaaatagacatgaagcatt |
252 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5771 |
aaagttactttgatttcaccattttaacaaaatagacatgaagcatt |
5725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0366 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: scaffold0366
Description:
Target: scaffold0366; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 6 - 252
Target Start/End: Complemental strand, 5971 - 5725
Alignment:
| Q |
6 |
aggagcagagagtgagcaaccttttacaatcactctttgttggagtagcagtgtttgctatgcctgccataaaaatgataccaacttcagttttgtgggg |
105 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5971 |
aggagcaaagagtgagcaaccttttacaatcactctttgttggagtagcagtgtttgctatgcctgccataaaaatgataccaacttcagttttgtgggg |
5872 |
T |
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| Q |
106 |
atactttgcttacatggctattgatagtcttccagggaatcagttttgggaaaggatattgcttctttttgtaagacctagtagatggtacaagtaagtg |
205 |
Q |
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| T |
5871 |
atactttgcttacatggctattgatagtcttccagggaatcagttttgggaaaggatattgcttctttttgtaagacctagtagatggtacaagtaagtg |
5772 |
T |
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| Q |
206 |
aaagttactttgatttcaccattttaacaaaatagacatgaagcatt |
252 |
Q |
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| T |
5771 |
aaagttactttgatttcaccattttaacaaaatagacatgaagcatt |
5725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 77 - 177
Target Start/End: Complemental strand, 49706539 - 49706439
Alignment:
| Q |
77 |
aaaatgataccaacttcagttttgtggggatactttgcttacatggctattgatagtcttccagggaatcagttttgggaaaggatattgcttctttttg |
176 |
Q |
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|||| ||||||||| || ||||| |||||||| |||||||||||||| || ||||||||||| ||||||||||| ||||||||||||||||| || |||| |
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| T |
49706539 |
aaaaggataccaacctcggttttatggggatattttgcttacatggcaatagatagtcttccggggaatcagttctgggaaaggatattgctcctctttg |
49706440 |
T |
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| Q |
177 |
t |
177 |
Q |
| |
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| T |
49706439 |
t |
49706439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 101 - 174
Target Start/End: Original strand, 2235350 - 2235423
Alignment:
| Q |
101 |
tggggatactttgcttacatggctattgatagtcttccagggaatcagttttgggaaaggatattgcttctttt |
174 |
Q |
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|||||||| |||||||| ||||| ||||||||||| |||||||| || |||||||||||||||||||||||||| |
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| T |
2235350 |
tggggatattttgcttatatggcaattgatagtctcccagggaaccaattttgggaaaggatattgcttctttt |
2235423 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 129
Target Start/End: Original strand, 12308781 - 12308833
Alignment:
| Q |
77 |
aaaatgataccaacttcagttttgtggggatactttgcttacatggctattga |
129 |
Q |
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|||||||| ||||| || || ||||||||||||||||||| |||||| ||||| |
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| T |
12308781 |
aaaatgattccaacgtctgtattgtggggatactttgctttcatggccattga |
12308833 |
T |
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