View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3425_low_58 (Length: 252)
Name: NF3425_low_58
Description: NF3425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3425_low_58 |
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Alignment Details
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 43162071 - 43161852
Alignment:
| Q |
1 |
ctatagtataatgcaaaactaattaccaccattggactttttattaacttggaattcaatcttcaaattcaaaccttatggcacctaaaataccatggct |
100 |
Q |
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| T |
43162071 |
ctatagtataatgcaaaactaattaccaccattggactttttattaacttggaattcaatcttcaaattcaaaccttatggcacctaaaataccatggct |
43161972 |
T |
|
| Q |
101 |
ctctatttttatattcactagttcctatcacatccatatttctcaatactttcctcttgtattgtagcaaatgcaatcaattctctgaagtttactaaac |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |||||||||||||||||||||||||||||||||| ||| |
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| T |
43161971 |
atctatttttatattcactagttcctatcacatccatatttctcaatagtttcctcttgaactgtagcaaatgcaatcaattctctgaagtttactgaac |
43161872 |
T |
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| Q |
201 |
aataaaaatttactaataac |
220 |
Q |
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|||||||||||||||||||| |
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| T |
43161871 |
aataaaaatttactaataac |
43161852 |
T |
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