View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3425_low_59 (Length: 251)
Name: NF3425_low_59
Description: NF3425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3425_low_59 |
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Alignment Details
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 18 - 235
Target Start/End: Original strand, 13892862 - 13893079
Alignment:
| Q |
18 |
agcattagctagtgaaaagaagacatacaaaaggttacgttgcagaatatcaatcatcatatattatattaagatgcaaaagcaaacaaacacaccatta |
117 |
Q |
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| T |
13892862 |
agcattagctagtgaaaagaagacatacaaaaggttacgttgtagaatctcaatcatcatatattatattaagatacaaaagcaaacaaacacaccatta |
13892961 |
T |
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| Q |
118 |
tggaatatgaagcagtttggtaattcaaaccatcttatatgtttatcatccttagcataccgaggtaggacgccaaaacgagctttcttggttgaatcaa |
217 |
Q |
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| T |
13892962 |
tggaatatgaagcagtttggtaattcaaaccatcttatgtgtttatcatccttagcataccgaggtaggacgccaaaacgagctttcttggttgaatcaa |
13893061 |
T |
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| Q |
218 |
aagagaatactagtctct |
235 |
Q |
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| T |
13893062 |
aagagaatactagtctct |
13893079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 95 - 226
Target Start/End: Original strand, 13870497 - 13870628
Alignment:
| Q |
95 |
aaaagcaaacaaacacaccattatggaatatgaagcagtttggtaattcaaaccatcttatatgtttatcatccttagcataccgaggtaggacgccaaa |
194 |
Q |
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| T |
13870497 |
aaaagcaaataaacacaccattatggaatatgaagcaatttggcaattcaaaccatcttataagcttatcatctttagcatatcgaggtaggacaccaaa |
13870596 |
T |
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| Q |
195 |
acgagctttcttggttgaatcaaaagagaata |
226 |
Q |
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| T |
13870597 |
acgagctttcttggtcgaatcaaaagagaata |
13870628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 95 - 226
Target Start/End: Original strand, 13851651 - 13851782
Alignment:
| Q |
95 |
aaaagcaaacaaacacaccattatggaatatgaagcagtttggtaattcaaaccatcttatatgtttatcatccttagcataccgaggtaggacgccaaa |
194 |
Q |
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||||||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||| | |||||||| |||||||| ||||||||||| ||||| |
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| T |
13851651 |
aaaagcaaataaacacaccattatggaatatgaagcaatttggcaattcaaaccatcttatgagcttatcatctttagcatatcgaggtaggacaccaaa |
13851750 |
T |
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| Q |
195 |
acgagctttcttggttgaatcaaaagagaata |
226 |
Q |
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| T |
13851751 |
acgagctttcttggtagaatcaaaagagaata |
13851782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 95 - 226
Target Start/End: Original strand, 13899561 - 13899692
Alignment:
| Q |
95 |
aaaagcaaacaaacacaccattatggaatatgaagcagtttggtaattcaaaccatcttatatgtttatcatccttagcataccgaggtaggacgccaaa |
194 |
Q |
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| T |
13899561 |
aaaagtaaacaaacataccattgtggaatatgaagcagtttggtagttcgaaccatctaatatgtttttcatccttagcatagcggggtagaacaccgaa |
13899660 |
T |
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| Q |
195 |
acgagctttcttggttgaatcaaaagagaata |
226 |
Q |
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| T |
13899661 |
acgagctttcttggtcgaatcaaaagagaata |
13899692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 13870361 - 13870398
Alignment:
| Q |
18 |
agcattagctagtgaaaagaagacatacaaaaggttac |
55 |
Q |
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| T |
13870361 |
agcattagctagtgaaaggaagacatataaaaggttac |
13870398 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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