View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3425_low_60 (Length: 251)
Name: NF3425_low_60
Description: NF3425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3425_low_60 |
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Alignment Details
Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 40723249 - 40723002
Alignment:
| Q |
1 |
taacaggttgttgaggtgcctaatgtcagctgggaggacatcggaggccttgagaatgtcaagcgtgaactgcaagaggtcagaaatctttcctagtact |
100 |
Q |
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| T |
40723249 |
taacatgttgttgaggtgcctaatgtcagctgggaggacatcggaggccttgagaatgtcaagcgtgaactgcaagaggtcagaaatctttcttagtact |
40723150 |
T |
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| Q |
101 |
taattacaccttatttccttaccaatattatctatttctgattttggttaatgtgtacgcagactgttcaatatccagttgagcacccggaaaagtttga |
200 |
Q |
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| T |
40723149 |
taattacaccttatttccttaccaatattatctatttctgattttggttaatgtgtacgcagactgttcaatatccagttgagcacccggaaaagtttga |
40723050 |
T |
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| Q |
201 |
gaagtttgggatgtcaccatcaaaaggagttctcttctctgctcctcc |
248 |
Q |
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| T |
40723049 |
gaagtttgggatgtcaccatcaaaaggagttctcttctatggtcctcc |
40723002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 40666756 - 40667003
Alignment:
| Q |
1 |
taacaggttgttgaggtgcctaatgtcagctgggaggacatcggaggccttgagaatgtcaagcgtgaactgcaagaggtcagaaatctttcctagtact |
100 |
Q |
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| T |
40666756 |
taacaggttgttgaggtgcctaatgtcagctgggaggacatcggaggccttgagaatgtcaagcgtgaactgcaagaggtcataaatctttcctactact |
40666855 |
T |
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| Q |
101 |
taattacaccttatttccttaccaatattatctatttctgattttggttaatgtgtacgcagactgttcaatatccagttgagcacccggaaaagtttga |
200 |
Q |
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| T |
40666856 |
taattacacctgatttccttactagttttacctgtttctgattttggtttgtgtgtacgtagactgttcaatatccggttgagcacccggaaaagtttga |
40666955 |
T |
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| Q |
201 |
gaagtttgggatgtcaccatcaaaaggagttctcttctctgctcctcc |
248 |
Q |
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| T |
40666956 |
gaagtttgggatgtcaccatccaaaggagttctcttctatggtcctcc |
40667003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 159 - 249
Target Start/End: Original strand, 27978237 - 27978327
Alignment:
| Q |
159 |
gcagactgttcaatatccagttgagcacccggaaaagtttgagaagtttgggatgtcaccatcaaaaggagttctcttctctgctcctcct |
249 |
Q |
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| T |
27978237 |
gcagactgttcaatatccagtggaacaccctgagaaatttgagaagtttgggatgtcaccttcaaagggagttctgttctatggtcctcct |
27978327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 80
Target Start/End: Original strand, 27978082 - 27978158
Alignment:
| Q |
4 |
caggttgttgaggtgcctaatgtcagctgggaggacatcggaggccttgagaatgtcaagcgtgaactgcaagaggt |
80 |
Q |
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| T |
27978082 |
caggttgttgaagtgcccaatgtcagctgggaagatattggtggtcttgaaaatgttaagcgagaactccaggaggt |
27978158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 159 - 249
Target Start/End: Complemental strand, 41092097 - 41092007
Alignment:
| Q |
159 |
gcagactgttcaatatccagttgagcacccggaaaagtttgagaagtttgggatgtcaccatcaaaaggagttctcttctctgctcctcct |
249 |
Q |
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| T |
41092097 |
gcagactgtccaatatccagtggaacaccctgaaaagtttgagaagtttggaatgtcgccttcgaagggagttcttttctatggtcctcct |
41092007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 83
Target Start/End: Complemental strand, 41092253 - 41092174
Alignment:
| Q |
4 |
caggttgttgaggtgcctaatgtcagctgggaggacatcggaggccttgagaatgtcaagcgtgaactgcaagaggtcag |
83 |
Q |
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| T |
41092253 |
caggttgttgaagtgcctaattgcagctgggatgatatcggcggtcttgaaaatgttaagagggaactccaagaggtcag |
41092174 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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