View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3425_low_65 (Length: 248)
Name: NF3425_low_65
Description: NF3425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3425_low_65 |
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Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 49346943 - 49346715
Alignment:
| Q |
1 |
tattttcatacaatctttctccacaaccattcttctcttccccacttgcggtcaactcttttcttaatcttcatctctccgacgaacttcaccttcctcc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |
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| T |
49346943 |
tattttcatacaatctttctccacaaccattcttctcttccccacttgcggtcaactcttttcttaatcttcatctttccgacaaacttcaccttcctcc |
49346844 |
T |
|
| Q |
101 |
ggcgttgtttttcaacaagcaagtacgccggcgctgacaacagtatcaacggcggtggtagtttcatattgaaaatgttgaggttgtgctttcgattgaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||||| |||| |
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| T |
49346843 |
ggcgttgtttttcaacaagcaagtacgccggcgccgacaacagtatcaacggcggtggcagttttatattgaaaatgttgcagttgtgctttcga-tgaa |
49346745 |
T |
|
| Q |
201 |
ggtagattctatcagaagcattaatcttca |
230 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
49346744 |
ggtagattctatcagaagcattaatcttca |
49346715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 32894442 - 32894214
Alignment:
| Q |
1 |
tattttcatacaatctttctccacaaccattcttctcttccccacttgcggtcaactcttttcttaatcttcatctctccgacgaacttcaccttcctcc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
32894442 |
tattttcatacaatctttctccacaaccattcttctcttccccacttgcggtcaactcttttcttaatcttcatctttccgacgaacttcaccttcctcc |
32894343 |
T |
|
| Q |
101 |
ggcgttgtttttcaacaagcaagtacgccggcgctgacaacagtatcaacggcggtggtagtttcatattgaaaatgttgaggttgtgctttcgattgaa |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||| ||||||||| ||||| ||||| ||||||| |||| |
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| T |
32894342 |
ggcgttgtttttcaacaagcaagtacgccggcgccgacaacagtatcaacggtggtggcagttttatattgaaagtgttgcagttgttctttcga-tgaa |
32894244 |
T |
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| Q |
201 |
ggtagattctatcagaagcattaatcttca |
230 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
32894243 |
ggtagattctatcagaagcattaatcttca |
32894214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 17947678 - 17947450
Alignment:
| Q |
1 |
tattttcatacaatctttctccacaaccattcttctcttccccacttgcggtcaactcttttcttaatcttcatctctccgacgaacttcaccttcctcc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
17947678 |
tattttcatacaatctttctccacaaccattcttctcttccccacttgcggtcaactcttttcttaatcttcatctttccgacgaacttcaccttcctcc |
17947579 |
T |
|
| Q |
101 |
ggcgttgtttttcaacaagcaagtacgccggcgctgacaacagtatcaacggcggtggtagtttcatattgaaaatgttgaggttgtgctttcgattgaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||||| |||| |
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| T |
17947578 |
ggcgttgtttttcaacaagcaagtacgccggcgccgacaacagtatcaacggcggtgacagttttatattgaaaatgttgcagttgtgctttcga-tgaa |
17947480 |
T |
|
| Q |
201 |
ggtagattctatcagaagcattaatcttca |
230 |
Q |
| |
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|||||||||||||||||| ||||||||||| |
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|
| T |
17947479 |
ggtagattctatcagaagtattaatcttca |
17947450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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