View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3425_low_67 (Length: 248)
Name: NF3425_low_67
Description: NF3425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3425_low_67 |
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Alignment Details
Target: chr3 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 24148801 - 24148571
Alignment:
| Q |
1 |
gttgtgtaagtggtgtggatcatttggtcaaaatatcaactattactatattatcctnnnnnnn-caaattctaaatagtttgtgcagccataagcccac |
99 |
Q |
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| T |
24148801 |
gttgtgtaagtggtgtggatcatttggtcaaaatatcaactattactatattatactaaaaaaaacaaattctaaatagtttgtgcaggcataagcccac |
24148702 |
T |
|
| Q |
100 |
acaaactaacacatgcatccgtccctgagtgagagtttacctcatatgatgaatcttcctggcaataatacaagcacaaggcaaccaataagatattttg |
199 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
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| T |
24148701 |
acaaactaacacatgcatccgtccctaagtgagagtttacctcatatgatgaatcttcctggcaataatacaagcacaaagcaaccaataagatgttttg |
24148602 |
T |
|
| Q |
200 |
atcatataaccacatcttttataatccatat |
230 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
24148601 |
atcatataaccacatcttttataatccatat |
24148571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 113
Target Start/End: Original strand, 35690698 - 35690746
Alignment:
| Q |
65 |
caaattctaaatagtttgtgcagccataagcccacacaaactaacacat |
113 |
Q |
| |
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| T |
35690698 |
caaattctaaatagtttgtgtagtcataagtccacacaagctaacacat |
35690746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 54
Target Start/End: Original strand, 30282574 - 30282616
Alignment:
| Q |
12 |
ggtgtggatcatttggtcaaaatatcaactattactatattat |
54 |
Q |
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| T |
30282574 |
ggtgtgggtcatttagtcaaaatatcaactattaatatattat |
30282616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 54
Target Start/End: Original strand, 24638273 - 24638305
Alignment:
| Q |
22 |
atttggtcaaaatatcaactattactatattat |
54 |
Q |
| |
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|||||||| |||||||||||||||||||||||| |
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|
| T |
24638273 |
atttggtctaaatatcaactattactatattat |
24638305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 54
Target Start/End: Original strand, 22487717 - 22487749
Alignment:
| Q |
22 |
atttggtcaaaatatcaactattactatattat |
54 |
Q |
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|||||||| |||||||||||||||||||||||| |
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| T |
22487717 |
atttggtctaaatatcaactattactatattat |
22487749 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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