View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3425_low_68 (Length: 248)
Name: NF3425_low_68
Description: NF3425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3425_low_68 |
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Alignment Details
Target: chr5 (Bit Score: 149; Significance: 8e-79; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 38122665 - 38122857
Alignment:
| Q |
1 |
tgaataataatttctcacatttctttacttctttcaatttgtttagatgtgtcgacaaccatgattgtacgtcctgggcctgtggttgacttcctaattg |
100 |
Q |
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| T |
38122665 |
tgaataataatttgtcacatttctttagttctttcaatttgtttagatgtgtcgacaaccatgattgtacgtcctgggcctgtggttgacttcctaattg |
38122764 |
T |
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| Q |
101 |
ccaatcaaaatgtaagagatcctttcagtcttgactggaataaggtaaccaga-tttctcatgacttgcttgtttttctaattgttccttaac |
192 |
Q |
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| T |
38122765 |
aaaatcaaaatgtgagagatcctttcagtcttgactggaataaggtaaccagattttccgatgacttgcttgtgttgctaattgttccttaac |
38122857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 33 - 185
Target Start/End: Original strand, 38114202 - 38114354
Alignment:
| Q |
33 |
ttcaatttgtttagatgtgtcgacaaccatgattgtacgtcctgggcctgtggttgacttcctaattgccaatcaaaatgtaagagatcctttcagtctt |
132 |
Q |
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| T |
38114202 |
ttcaatttgtttagacgtgtcaacaaccatgattgtccatcctgggcctgtggttgatttcttgattgcaaaccagaatgtgagagatcctttcagtctt |
38114301 |
T |
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| Q |
133 |
gactggaataaggtaaccaga-tttctcatgacttgcttgtttttctaattgtt |
185 |
Q |
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| T |
38114302 |
gactggaataaggtaaccaaattttctgaagacttgtttg-ttttctaattgtt |
38114354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 32 - 148
Target Start/End: Original strand, 14915098 - 14915214
Alignment:
| Q |
32 |
tttcaatttgtttagatgtgtcgacaaccatgattgtacgtcctgggcctgtggttgacttcctaattgccaatcaaaatgtaagagatcctttcagtct |
131 |
Q |
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| T |
14915098 |
tttcaatttgtttagatgtgtcaacaacaatgattgttcaaccggggcctgtagttgacttcttgattgcaaatcaaaatgtgaaagatcctttcaacct |
14915197 |
T |
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| Q |
132 |
tgactggaataaggtaa |
148 |
Q |
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||| |||| |||||||| |
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| T |
14915198 |
tgattggattaaggtaa |
14915214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 125
Target Start/End: Original strand, 35465182 - 35465234
Alignment:
| Q |
73 |
cctgggcctgtggttgacttcctaattgccaatcaaaatgtaagagatccttt |
125 |
Q |
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| T |
35465182 |
cctgggcctgtggtggatttcttaatttccaatcaaaatgttagagatccttt |
35465234 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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