View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3425_low_71 (Length: 247)
Name: NF3425_low_71
Description: NF3425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3425_low_71 |
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Alignment Details
Target: chr6 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 11 - 232
Target Start/End: Complemental strand, 2366367 - 2366146
Alignment:
| Q |
11 |
agatatgaaaatgttgttgttgttcaacacgccgattggtgagcatttctgaagttgccatctttcttatatcacggtaataagaaccattgggtgcaaa |
110 |
Q |
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| T |
2366367 |
agatatgaaaatgttgttgttgttcaacacgccgattggtgagcatttctgaagttgctatctttcttatttcacggtaataagaaccattgggtgcaaa |
2366268 |
T |
|
| Q |
111 |
cccaagaaaagctccattgtaagtcatatgtttatatgcttcacctttaggacgagtggatattgccaagtcaattttggtgaaacattcctttgccatt |
210 |
Q |
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| T |
2366267 |
cccaagaaaagctccattgtaagtcatatgtttatatgcttcacctttagggcgagtggatattgccaagtcaattttggtgaaacattcctttgccatt |
2366168 |
T |
|
| Q |
211 |
tcccaattgctaagaaccaaag |
232 |
Q |
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|||||||||||||||||||||| |
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| T |
2366167 |
tcccaattgctaagaaccaaag |
2366146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 14 - 232
Target Start/End: Complemental strand, 2361760 - 2361542
Alignment:
| Q |
14 |
tatgaaaatgttgttgttgttcaacacgccgattggtgagcatttctgaagttgccatctttcttatatcacggtaataagaaccattgggtgcaaaccc |
113 |
Q |
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| T |
2361760 |
tatgaaaatattgttgttgttcgacatgcctatggctgaggatctctgaagttgcaatcttccttacttggcgccaacaagaaccatagggtgctaacgc |
2361661 |
T |
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| Q |
114 |
aagaaaagctccattgtaagtcatatgtttatatgcttcacctttaggacgagtggatattgccaagtcaattttggtgaaacattcctttgccatttcc |
213 |
Q |
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| T |
2361660 |
aaacatggcaccattgtaacccaaatgttgagttgcttcaagtttagggcgattggatattgccaagtcaatttttgtgaaacattcctttgccatttcc |
2361561 |
T |
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| Q |
214 |
caattgctaagaaccaaag |
232 |
Q |
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| T |
2361560 |
caattgctaacaaccaaag |
2361542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 156 - 232
Target Start/End: Complemental strand, 2355935 - 2355859
Alignment:
| Q |
156 |
tttaggacgagtggatattgccaagtcaattttggtgaaacattcctttgccatttcccaattgctaagaaccaaag |
232 |
Q |
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| T |
2355935 |
tttaggacgagtggaaattgcaacgtcaaatttggtgaaacattccttcgccatttccgaattgctaagtaccaaag |
2355859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 121 - 232
Target Start/End: Complemental strand, 4303415 - 4303304
Alignment:
| Q |
121 |
gctccattgtaagtcatatgtttatatgcttcacctttaggacgagtggatattgccaagtcaattttggtgaaacattcctttgccatttcccaattgc |
220 |
Q |
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| T |
4303415 |
gctccattgtaagtcatatgttgagttgtttcaagtgtagggcgatcggaaattgccaagtcaattttggtgaaacattcctcagccatttcccaattac |
4303316 |
T |
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| Q |
221 |
taagaaccaaag |
232 |
Q |
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| || ||||||| |
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| T |
4303315 |
ttagcaccaaag |
4303304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 121 - 233
Target Start/End: Complemental strand, 41340199 - 41340087
Alignment:
| Q |
121 |
gctccattgtaagtcatatgtttatatgcttcacctttaggacgagtggatattgccaagtcaattttggtgaaacattcctttgccatttcccaattgc |
220 |
Q |
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||||||||||||| || ||||||| | ||||| |||||| ||| | || | ||||||||||| |||||| |||||||||| |||||||||||||||| |
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| T |
41340199 |
gctccattgtaagccaaatgtttagttacttcaagtttagggcgatttgaaactgccaagtcaactttggtaaaacattcctcagccatttcccaattgc |
41340100 |
T |
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| Q |
221 |
taagaaccaaagt |
233 |
Q |
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|||| |||||||| |
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| T |
41340099 |
taagcaccaaagt |
41340087 |
T |
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