View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3425_low_74 (Length: 245)

Name: NF3425_low_74
Description: NF3425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3425_low_74
NF3425_low_74
[»] chr1 (20 HSPs)
chr1 (10-121)||(17414331-17414442)
chr1 (10-162)||(3701252-3701384)
chr1 (16-121)||(3696139-3696244)
chr1 (36-93)||(3468378-3468435)
chr1 (36-91)||(28574607-28574662)
chr1 (36-91)||(28598619-28598674)
chr1 (47-121)||(19311134-19311208)
chr1 (44-121)||(1188129-1188206)
chr1 (52-121)||(10186015-10186084)
chr1 (75-121)||(13654658-13654704)
chr1 (56-121)||(35653062-35653127)
chr1 (17-87)||(43359093-43359163)
chr1 (52-121)||(10186331-10186400)
chr1 (44-91)||(16051503-16051550)
chr1 (72-111)||(21430814-21430853)
chr1 (52-115)||(44523905-44523968)
chr1 (67-121)||(1188307-1188361)
chr1 (92-121)||(28574643-28574672)
chr1 (215-244)||(34867738-34867767)
chr1 (217-245)||(32558210-32558238)
[»] chr8 (20 HSPs)
chr8 (17-121)||(10340726-10340830)
chr8 (36-91)||(14318454-14318509)
chr8 (36-91)||(18494016-18494071)
chr8 (36-91)||(26981714-26981769)
chr8 (36-91)||(26986828-26986883)
chr8 (36-91)||(34108541-34108596)
chr8 (36-91)||(14314750-14314805)
chr8 (214-245)||(44886191-44886222)
chr8 (214-244)||(3345662-3345692)
chr8 (92-121)||(14318444-14318473)
chr8 (56-121)||(18608460-18608525)
chr8 (92-121)||(26981704-26981733)
chr8 (92-121)||(26986818-26986847)
chr8 (92-121)||(34108577-34108606)
chr8 (217-245)||(1985856-1985884)
chr8 (217-245)||(4147071-4147099)
chr8 (95-123)||(14314738-14314766)
chr8 (217-245)||(37277747-37277775)
chr8 (217-245)||(41015078-41015106)
chr8 (215-243)||(42363861-42363889)
[»] chr3 (38 HSPs)
chr3 (10-121)||(18023942-18024054)
chr3 (36-93)||(5457848-5457905)
chr3 (10-90)||(8458597-8458676)
chr3 (36-91)||(4050118-4050173)
chr3 (36-91)||(4055252-4055307)
chr3 (36-91)||(5481327-5481382)
chr3 (36-91)||(6852791-6852846)
chr3 (36-91)||(6857894-6857949)
chr3 (36-91)||(8465060-8465115)
chr3 (36-91)||(10584697-10584752)
chr3 (36-91)||(10591134-10591189)
chr3 (36-91)||(10672777-10672832)
chr3 (36-91)||(10677890-10677945)
chr3 (17-91)||(49784837-49784911)
chr3 (10-91)||(20891433-20891514)
chr3 (36-91)||(1302083-1302138)
chr3 (26-109)||(18023362-18023445)
chr3 (36-91)||(31081346-31081401)
chr3 (36-91)||(33702438-33702493)
chr3 (36-93)||(269487-269544)
chr3 (10-93)||(3187282-3187365)
chr3 (36-91)||(31076239-31076294)
chr3 (214-245)||(53422084-53422115)
chr3 (47-121)||(29827783-29827857)
chr3 (92-121)||(1302073-1302102)
chr3 (92-121)||(4050154-4050183)
chr3 (92-121)||(4055288-4055317)
chr3 (92-121)||(5481317-5481346)
chr3 (92-121)||(6852781-6852810)
chr3 (92-121)||(6857884-6857913)
chr3 (92-121)||(8465096-8465125)
chr3 (92-121)||(10584687-10584716)
chr3 (92-121)||(10591124-10591153)
chr3 (92-121)||(10672767-10672796)
chr3 (92-121)||(10677880-10677909)
chr3 (92-121)||(20891495-20891524)
chr3 (216-245)||(33252772-33252801)
chr3 (92-121)||(33702428-33702457)
[»] chr4 (23 HSPs)
chr4 (17-119)||(18716831-18716932)
chr4 (17-121)||(3409357-3409461)
chr4 (17-119)||(18737504-18737608)
chr4 (47-121)||(14643554-14643628)
chr4 (36-91)||(35091225-35091280)
chr4 (36-90)||(35096338-35096392)
chr4 (17-91)||(3424152-3424225)
chr4 (75-121)||(22119056-22119102)
chr4 (17-87)||(32429076-32429146)
chr4 (47-121)||(47071712-47071786)
chr4 (47-108)||(30019677-30019738)
chr4 (214-245)||(29432042-29432073)
chr4 (52-119)||(34601855-34601922)
chr4 (214-245)||(34957644-34957675)
chr4 (215-245)||(37973509-37973539)
chr4 (92-121)||(3424142-3424171)
chr4 (17-70)||(18671181-18671234)
chr4 (92-121)||(35091261-35091290)
chr4 (209-245)||(3770169-3770205)
chr4 (213-245)||(13021266-13021298)
chr4 (217-245)||(19869445-19869473)
chr4 (217-245)||(23770054-23770082)
chr4 (213-245)||(55586904-55586936)
[»] chr5 (17 HSPs)
chr5 (36-121)||(2024354-2024439)
chr5 (36-91)||(9872263-9872318)
chr5 (36-91)||(9877378-9877433)
chr5 (36-91)||(39904155-39904210)
chr5 (47-121)||(35368651-35368725)
chr5 (47-119)||(43540594-43540666)
chr5 (10-121)||(4555879-4555990)
chr5 (211-245)||(1055363-1055397)
chr5 (36-91)||(39909268-39909323)
chr5 (214-244)||(16521413-16521443)
chr5 (215-245)||(29183129-29183159)
chr5 (92-121)||(9872253-9872282)
chr5 (92-121)||(9877368-9877397)
chr5 (216-245)||(25566829-25566858)
chr5 (92-121)||(39904191-39904220)
chr5 (217-245)||(5891767-5891795)
chr5 (217-245)||(19849550-19849578)
[»] chr7 (18 HSPs)
chr7 (54-121)||(2248881-2248948)
chr7 (36-91)||(12857099-12857154)
chr7 (36-91)||(14610639-14610694)
chr7 (36-91)||(26051331-26051386)
chr7 (36-91)||(26056444-26056499)
chr7 (36-91)||(26060690-26060745)
chr7 (36-91)||(26065803-26065858)
chr7 (36-91)||(12851986-12852041)
chr7 (215-245)||(19778270-19778300)
chr7 (92-121)||(12852022-12852051)
chr7 (92-121)||(12857135-12857164)
chr7 (92-121)||(26051367-26051396)
chr7 (92-121)||(26056480-26056509)
chr7 (92-121)||(26060726-26060755)
chr7 (92-121)||(26065839-26065868)
chr7 (52-121)||(37459731-37459800)
chr7 (217-245)||(30757511-30757539)
chr7 (217-245)||(37047663-37047691)
[»] scaffold0005 (1 HSPs)
scaffold0005 (47-121)||(173664-173738)
[»] chr6 (6 HSPs)
chr6 (36-91)||(21276083-21276138)
chr6 (47-121)||(12909575-12909649)
chr6 (47-121)||(21936436-21936510)
chr6 (47-117)||(12934682-12934752)
chr6 (92-121)||(21276119-21276148)
chr6 (217-245)||(15273266-15273294)
[»] chr2 (14 HSPs)
chr2 (36-91)||(14917221-14917276)
chr2 (36-91)||(17720365-17720420)
chr2 (36-90)||(39178909-39178963)
chr2 (44-121)||(20892126-20892203)
chr2 (36-91)||(17720038-17720093)
chr2 (36-91)||(30283289-30283344)
chr2 (47-121)||(42780494-42780568)
chr2 (36-90)||(45120697-45120751)
chr2 (214-245)||(315013-315044)
chr2 (214-244)||(35698880-35698910)
chr2 (92-121)||(14917211-14917240)
chr2 (92-121)||(17720028-17720057)
chr2 (92-121)||(17720355-17720384)
chr2 (217-245)||(11362559-11362587)
[»] scaffold0006 (1 HSPs)
scaffold0006 (75-121)||(144419-144465)
[»] scaffold0223 (1 HSPs)
scaffold0223 (36-91)||(1858-1913)
[»] scaffold0283 (1 HSPs)
scaffold0283 (214-245)||(1179-1210)


Alignment Details
Target: chr1 (Bit Score: 84; Significance: 5e-40; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 10 - 121
Target Start/End: Complemental strand, 17414442 - 17414331
Alignment:
Q  10 caatgctatggttccttatctattagtaaataataatgttctaatgtatatgaatggttcctataaagagttacaacttttgatgaagagttacaacttt 109  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||  || ||||||||||||||||| ||||||||||||| |||    
T  17414442 caatgctatggttcattatctattagtaaataataatgttctaatgtatatgaatgattctaatgaagagttacaacttttggtgaagagttacaagttt 17414343  T
Q  110 tggttctaaagt 121  Q
    ||||||||||||    
T  17414342 tggttctaaagt 17414331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 10 - 162
Target Start/End: Complemental strand, 3701384 - 3701252
Alignment:
Q  10 caatgctatggttccttatctattagtaaataataatgttctaatgtatatgaatggttcctataaagagttacaacttttgatgaagagttacaacttt 109  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                    ||    
T  3701384 caatgctatggttcattatctattagtaaataataatgttctaatgtatatgaatggttcctataaagagttacaact--------------------tt 3701305  T
Q  110 tggttctaaagtaaactcaccaccatataatatgtgtattacgatagtcgggg 162  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  3701304 tggttctaaagtaaactcaccaccatataatacgtgtattacgatagtcgggg 3701252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 16 - 121
Target Start/End: Complemental strand, 3696244 - 3696139
Alignment:
Q  16 tatggttccttatctattagtaaataataatgttctaatgtatatgaatggttcctataaagagttacaacttttgatgaagagttacaacttttggttc 115  Q
    |||||||| |||| |||  ||||||||||||||| ||||||||||||||| |||| || || |||| ||||||||||| ||||||||||||||||| |||    
T  3696244 tatggttcattatttatcggtaaataataatgttttaatgtatatgaatgattcccatgaaaagttgcaacttttgataaagagttacaacttttgattc 3696145  T
Q  116 taaagt 121  Q
     |||||    
T  3696144 caaagt 3696139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 36 - 93
Target Start/End: Original strand, 3468378 - 3468435
Alignment:
Q  36 taaataataatgttctaatgtatatgaatggttcctataaagagttacaacttttgat 93  Q
    ||||||||||||||| |||||||||||||||||||||| |||| ||||||||||||||    
T  3468378 taaataataatgttccaatgtatatgaatggttcctatgaagaattacaacttttgat 3468435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 36 - 91
Target Start/End: Original strand, 28574607 - 28574662
Alignment:
Q  36 taaataataatgttctaatgtatatgaatggttcctataaagagttacaacttttg 91  Q
    ||||||||||||||| ||||||||||||||||||| || |||||||||||||||||    
T  28574607 taaataataatgttccaatgtatatgaatggttcccatgaagagttacaacttttg 28574662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 36 - 91
Target Start/End: Original strand, 28598619 - 28598674
Alignment:
Q  36 taaataataatgttctaatgtatatgaatggttcctataaagagttacaacttttg 91  Q
    ||||||||||||||| ||||||||||||||||||| || |||||||||||||||||    
T  28598619 taaataataatgttccaatgtatatgaatggttcccatgaagagttacaacttttg 28598674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 47 - 121
Target Start/End: Original strand, 19311134 - 19311208
Alignment:
Q  47 gttctaatgtatatgaatggttcctataaagagttacaacttttgatgaagagttacaacttttggttctaaagt 121  Q
    |||| |||||||||||| | |||| || ||||||||||||| ||| |||||||||||||||||||||| ||||||    
T  19311134 gttccaatgtatatgaaagattcccatgaagagttacaactcttggtgaagagttacaacttttggttataaagt 19311208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 44 - 121
Target Start/End: Original strand, 1188129 - 1188206
Alignment:
Q  44 aatgttctaatgtatatgaatggttcctataaagagttacaacttttgatgaagagttacaacttttggttctaaagt 121  Q
    ||||||| |||||||||||| | |||| || || |||||||||| ||| |||| ||||||||||||||||||||||||    
T  1188129 aatgttccaatgtatatgaaagattcccatgaatagttacaactcttggtgaaaagttacaacttttggttctaaagt 1188206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 52 - 121
Target Start/End: Original strand, 10186015 - 10186084
Alignment:
Q  52 aatgtatatgaatggttcctataaagagttacaacttttgatgaagagttacaacttttggttctaaagt 121  Q
    |||||||||||| | |||| |||||||||||||| | ||| ||||||||||||||||||| |||||||||    
T  10186015 aatgtatatgaaagattcccataaagagttacaattcttggtgaagagttacaacttttgattctaaagt 10186084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 75 - 121
Target Start/End: Original strand, 13654658 - 13654704
Alignment:
Q  75 aagagttacaacttttgatgaagagttacaacttttggttctaaagt 121  Q
    ||||||||||||| ||| |||||||||||||||||||||||||||||    
T  13654658 aagagttacaactcttggtgaagagttacaacttttggttctaaagt 13654704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 56 - 121
Target Start/End: Complemental strand, 35653127 - 35653062
Alignment:
Q  56 tatatgaatggttcctataaagagttacaacttttgatgaagagttacaacttttggttctaaagt 121  Q
    |||||||||| |||| || ||| ||||||||| ||| ||||||||||||||||||||||| |||||    
T  35653127 tatatgaatgattcccatgaagtgttacaactcttggtgaagagttacaacttttggttccaaagt 35653062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 17 - 87
Target Start/End: Original strand, 43359093 - 43359163
Alignment:
Q  17 atggttccttatctattagtaaataataatgttctaatgtatatgaatggttcctataaagagttacaact 87  Q
    ||||||| ||||| || | ||||||||||||||| |||||||||||||| |||  || |||||||||||||    
T  43359093 atggttcattatcaatcaataaataataatgttccaatgtatatgaatgattctcatgaagagttacaact 43359163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 52 - 121
Target Start/End: Complemental strand, 10186400 - 10186331
Alignment:
Q  52 aatgtatatgaatggttcctataaagagttacaacttttgatgaagagttacaacttttggttctaaagt 121  Q
    |||||||||||| | |||| || ||||||||||||| ||| |||||||||| ||||||||  ||||||||    
T  10186400 aatgtatatgaaagattcccatgaagagttacaactcttggtgaagagttaaaacttttgagtctaaagt 10186331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 91
Target Start/End: Original strand, 16051503 - 16051550
Alignment:
Q  44 aatgttctaatgtatatgaatggttcctataaagagttacaacttttg 91  Q
    |||||| ||||||||||||||| |||| ||||||||||| ||||||||    
T  16051503 aatgttataatgtatatgaatgattcccataaagagttataacttttg 16051550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 111
Target Start/End: Complemental strand, 21430853 - 21430814
Alignment:
Q  72 ataaagagttacaacttttgatgaagagttacaacttttg 111  Q
    ||||||| ||| ||||||||||||||||||||||||||||    
T  21430853 ataaagaattataacttttgatgaagagttacaacttttg 21430814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 115
Target Start/End: Complemental strand, 44523968 - 44523905
Alignment:
Q  52 aatgtatatgaatggttcctataaagagttacaacttttgatgaagagttacaacttttggttc 115  Q
    |||||||||||||| |||| || ||||||||||||| ||   ||||| ||||||||||||||||    
T  44523968 aatgtatatgaatgattcccatgaagagttacaactcttagcgaagatttacaacttttggttc 44523905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 121
Target Start/End: Original strand, 1188307 - 1188361
Alignment:
Q  67 ttcctataaagagttacaacttttgatgaagagttacaacttttggttctaaagt 121  Q
    ||||||| | ||||||||||| ||| |||| |||||||| |||||||||||||||    
T  1188307 ttcctatgacgagttacaactcttggtgaaaagttacaatttttggttctaaagt 1188361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 121
Target Start/End: Original strand, 28574643 - 28574672
Alignment:
Q  92 atgaagagttacaacttttggttctaaagt 121  Q
    ||||||||||||||||||||||||||||||    
T  28574643 atgaagagttacaacttttggttctaaagt 28574672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 215 - 244
Target Start/End: Complemental strand, 34867767 - 34867738
Alignment:
Q  215 tttaggtttaattgcacttttggaccccta 244  Q
    ||||||||||||||||||||||||||||||    
T  34867767 tttaggtttaattgcacttttggaccccta 34867738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 217 - 245
Target Start/End: Original strand, 32558210 - 32558238
Alignment:
Q  217 taggtttaattgcacttttggacccctat 245  Q
    |||||||||||||||||||||||||||||    
T  32558210 taggtttaattgcacttttggacccctat 32558238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 6e-24; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 17 - 121
Target Start/End: Complemental strand, 10340830 - 10340726
Alignment:
Q  17 atggttccttatctattagtaaataataatgttctaatgtatatgaatggttcctataaagagttacaacttttgatgaagagttacaacttttggttct 116  Q
    ||||||| |||||||| | ||||||||||||||| ||||||||||||||||| | || ||||||||||||| ||| | |||| | |||||||||||||||    
T  10340830 atggttcattatctatcaataaataataatgttccaatgtatatgaatggtttccatgaagagttacaactcttggtcaagattaacaacttttggttct 10340731  T
Q  117 aaagt 121  Q
    |||||    
T  10340730 aaagt 10340726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 36 - 91
Target Start/End: Complemental strand, 14318509 - 14318454
Alignment:
Q  36 taaataataatgttctaatgtatatgaatggttcctataaagagttacaacttttg 91  Q
    ||||||||||||||| ||||||||||||||||||| || |||||||||||||||||    
T  14318509 taaataataatgttccaatgtatatgaatggttcccatgaagagttacaacttttg 14318454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 36 - 91
Target Start/End: Complemental strand, 18494071 - 18494016
Alignment:
Q  36 taaataataatgttctaatgtatatgaatggttcctataaagagttacaacttttg 91  Q
    ||||||||||||||| ||||||||||||||||||| || |||||||||||||||||    
T  18494071 taaataataatgttccaatgtatatgaatggttcccatgaagagttacaacttttg 18494016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 36 - 91
Target Start/End: Complemental strand, 26981769 - 26981714
Alignment:
Q  36 taaataataatgttctaatgtatatgaatggttcctataaagagttacaacttttg 91  Q
    ||||||||||||||| ||||||||||||||||||| || |||||||||||||||||    
T  26981769 taaataataatgttccaatgtatatgaatggttcccatgaagagttacaacttttg 26981714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 36 - 91
Target Start/End: Complemental strand, 26986883 - 26986828
Alignment:
Q  36 taaataataatgttctaatgtatatgaatggttcctataaagagttacaacttttg 91  Q
    ||||||||||||||| ||||||||||||||||||| || |||||||||||||||||    
T  26986883 taaataataatgttccaatgtatatgaatggttcccatgaagagttacaacttttg 26986828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 36 - 91
Target Start/End: Original strand, 34108541 - 34108596
Alignment:
Q  36 taaataataatgttctaatgtatatgaatggttcctataaagagttacaacttttg 91  Q
    ||||||||||||||| ||||||||||||||||||| || |||||||||||||||||    
T  34108541 taaataataatgttccaatgtatatgaatggttcccatgaagagttacaacttttg 34108596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 36 - 91
Target Start/End: Complemental strand, 14314805 - 14314750
Alignment:
Q  36 taaataataatgttctaatgtatatgaatggttcctataaagagttacaacttttg 91  Q
    ||||||||||||||| |||||||| |||||||||| || |||||||||||||||||    
T  14314805 taaataataatgttccaatgtatacgaatggttcccattaagagttacaacttttg 14314750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 214 - 245
Target Start/End: Complemental strand, 44886222 - 44886191
Alignment:
Q  214 ttttaggtttaattgcacttttggacccctat 245  Q
    ||||||||||||||||||||||||||||||||    
T  44886222 ttttaggtttaattgcacttttggacccctat 44886191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 244
Target Start/End: Complemental strand, 3345692 - 3345662
Alignment:
Q  214 ttttaggtttaattgcacttttggaccccta 244  Q
    |||||||||||||||||||||||||||||||    
T  3345692 ttttaggtttaattgcacttttggaccccta 3345662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 121
Target Start/End: Complemental strand, 14318473 - 14318444
Alignment:
Q  92 atgaagagttacaacttttggttctaaagt 121  Q
    ||||||||||||||||||||||||||||||    
T  14318473 atgaagagttacaacttttggttctaaagt 14318444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 56 - 121
Target Start/End: Complemental strand, 18608525 - 18608460
Alignment:
Q  56 tatatgaatggttcctataaagagttacaacttttgatgaagagttacaacttttggttctaaagt 121  Q
    |||||||||| |||| || ||||||||||||| ||| | |||| | ||||||||| ||||||||||    
T  18608525 tatatgaatgattcccatgaagagttacaactcttggttaagaatcacaacttttagttctaaagt 18608460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 121
Target Start/End: Complemental strand, 26981733 - 26981704
Alignment:
Q  92 atgaagagttacaacttttggttctaaagt 121  Q
    ||||||||||||||||||||||||||||||    
T  26981733 atgaagagttacaacttttggttctaaagt 26981704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 121
Target Start/End: Complemental strand, 26986847 - 26986818
Alignment:
Q  92 atgaagagttacaacttttggttctaaagt 121  Q
    ||||||||||||||||||||||||||||||    
T  26986847 atgaagagttacaacttttggttctaaagt 26986818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 121
Target Start/End: Original strand, 34108577 - 34108606
Alignment:
Q  92 atgaagagttacaacttttggttctaaagt 121  Q
    ||||||||||||||||||||||||||||||    
T  34108577 atgaagagttacaacttttggttctaaagt 34108606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 217 - 245
Target Start/End: Complemental strand, 1985884 - 1985856
Alignment:
Q  217 taggtttaattgcacttttggacccctat 245  Q
    |||||||||||||||||||||||||||||    
T  1985884 taggtttaattgcacttttggacccctat 1985856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 217 - 245
Target Start/End: Complemental strand, 4147099 - 4147071
Alignment:
Q  217 taggtttaattgcacttttggacccctat 245  Q
    |||||||||||||||||||||||||||||    
T  4147099 taggtttaattgcacttttggacccctat 4147071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 123
Target Start/End: Complemental strand, 14314766 - 14314738
Alignment:
Q  95 aagagttacaacttttggttctaaagtaa 123  Q
    |||||||||||||||||||||||||||||    
T  14314766 aagagttacaacttttggttctaaagtaa 14314738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 217 - 245
Target Start/End: Complemental strand, 37277775 - 37277747
Alignment:
Q  217 taggtttaattgcacttttggacccctat 245  Q
    |||||||||||||||||||||||||||||    
T  37277775 taggtttaattgcacttttggacccctat 37277747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 217 - 245
Target Start/End: Complemental strand, 41015106 - 41015078
Alignment:
Q  217 taggtttaattgcacttttggacccctat 245  Q
    |||||||||||||||||||||||||||||    
T  41015106 taggtttaattgcacttttggacccctat 41015078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 215 - 243
Target Start/End: Complemental strand, 42363889 - 42363861
Alignment:
Q  215 tttaggtttaattgcacttttggacccct 243  Q
    |||||||||||||||||||||||||||||    
T  42363889 tttaggtttaattgcacttttggacccct 42363861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 6e-24; HSPs: 38)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 10 - 121
Target Start/End: Complemental strand, 18024054 - 18023942
Alignment:
Q  10 caatgctatggttccttatctattagtaaataataatgttctaatgtatatgaatggttcctataaagagttacaa-cttttgatgaagagttacaactt 108  Q
    |||||||||||||   ||||||| ||||||||||||||||| ||||||||||| || ||||||| ||||||||||| |||||| |||  |||||||||||    
T  18024054 caatgctatggtttaatatctatcagtaaataataatgttccaatgtatatgattgattcctatgaagagttacaaccttttggtgattagttacaactt 18023955  T
Q  109 ttggttctaaagt 121  Q
    |||||| ||||||    
T  18023954 ttggttataaagt 18023942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 36 - 93
Target Start/End: Complemental strand, 5457905 - 5457848
Alignment:
Q  36 taaataataatgttctaatgtatatgaatggttcctataaagagttacaacttttgat 93  Q
    ||||||||||||||| ||||||||||||||||||| || |||||||||||||||||||    
T  5457905 taaataataatgttccaatgtatatgaatggttcccatgaagagttacaacttttgat 5457848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 10 - 90
Target Start/End: Original strand, 8458597 - 8458676
Alignment:
Q  10 caatgctatggttccttatctattagtaaataataatgttctaatgtatatgaatggttcctataaagagttacaactttt 90  Q
    ||||| |||||||| |||| || || ||||||||||||||| ||||||||||||||||||| || ||||||||||||||||    
T  8458597 caatgttatggttcattat-taataataaataataatgttccaatgtatatgaatggttcccatgaagagttacaactttt 8458676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 36 - 91
Target Start/End: Original strand, 4050118 - 4050173
Alignment:
Q  36 taaataataatgttctaatgtatatgaatggttcctataaagagttacaacttttg 91  Q
    ||||||||||||||| ||||||||||||||||||| || |||||||||||||||||    
T  4050118 taaataataatgttccaatgtatatgaatggttcccatgaagagttacaacttttg 4050173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 36 - 91
Target Start/End: Original strand, 4055252 - 4055307
Alignment:
Q  36 taaataataatgttctaatgtatatgaatggttcctataaagagttacaacttttg 91  Q
    ||||||||||||||| ||||||||||||||||||| || |||||||||||||||||    
T  4055252 taaataataatgttccaatgtatatgaatggttcccatgaagagttacaacttttg 4055307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 36 - 91
Target Start/End: Complemental strand, 5481382 - 5481327
Alignment:
Q  36 taaataataatgttctaatgtatatgaatggttcctataaagagttacaacttttg 91  Q
    ||||||||||||||| ||||||||||||||||||| || |||||||||||||||||    
T  5481382 taaataataatgttccaatgtatatgaatggttcccatgaagagttacaacttttg 5481327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 36 - 91
Target Start/End: Complemental strand, 6852846 - 6852791
Alignment:
Q  36 taaataataatgttctaatgtatatgaatggttcctataaagagttacaacttttg 91  Q
    ||||||||||||||| ||||||||||||||||||| || |||||||||||||||||    
T  6852846 taaataataatgttccaatgtatatgaatggttcccatgaagagttacaacttttg 6852791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 36 - 91
Target Start/End: Complemental strand, 6857949 - 6857894
Alignment:
Q  36 taaataataatgttctaatgtatatgaatggttcctataaagagttacaacttttg 91  Q
    ||||||||||||||| ||||||||||||||||||| || |||||||||||||||||    
T  6857949 taaataataatgttccaatgtatatgaatggttcccatgaagagttacaacttttg 6857894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 36 - 91
Target Start/End: Original strand, 8465060 - 8465115
Alignment:
Q  36 taaataataatgttctaatgtatatgaatggttcctataaagagttacaacttttg 91  Q
    ||||||||||||||| ||||||||||||||||||| || |||||||||||||||||    
T  8465060 taaataataatgttccaatgtatatgaatggttcccatgaagagttacaacttttg 8465115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 36 - 91
Target Start/End: Complemental strand, 10584752 - 10584697
Alignment:
Q  36 taaataataatgttctaatgtatatgaatggttcctataaagagttacaacttttg 91  Q
    ||||||||||||||| ||||||||||||||||||| || |||||||||||||||||    
T  10584752 taaataataatgttccaatgtatatgaatggttcccatgaagagttacaacttttg 10584697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 36 - 91
Target Start/End: Complemental strand, 10591189 - 10591134
Alignment:
Q  36 taaataataatgttctaatgtatatgaatggttcctataaagagttacaacttttg 91  Q
    ||||||||||||||| ||||||||||||||||||| || |||||||||||||||||    
T  10591189 taaataataatgttccaatgtatatgaatggttcccatgaagagttacaacttttg 10591134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 36 - 91
Target Start/End: Complemental strand, 10672832 - 10672777
Alignment:
Q  36 taaataataatgttctaatgtatatgaatggttcctataaagagttacaacttttg 91  Q
    ||||||||||||||| ||||||||||||||||||| || |||||||||||||||||    
T  10672832 taaataataatgttccaatgtatatgaatggttcccatgaagagttacaacttttg 10672777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 36 - 91
Target Start/End: Complemental strand, 10677945 - 10677890
Alignment:
Q  36 taaataataatgttctaatgtatatgaatggttcctataaagagttacaacttttg 91  Q
    ||||||||||||||| ||||||||||||||||||| || |||||||||||||||||    
T  10677945 taaataataatgttccaatgtatatgaatggttcccatgaagagttacaacttttg 10677890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 91
Target Start/End: Original strand, 49784837 - 49784911
Alignment:
Q  17 atggttccttatctattagtaaataataatgttctaatgtatatgaatggttcctataaagagttacaacttttg 91  Q
    ||||||| |||||||| | ||||||||||||||| |||||||||||||| || | || |||||||||||||||||    
T  49784837 atggttcattatctatcaataaataataatgttccaatgtatatgaatgatttccatgaagagttacaacttttg 49784911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 10 - 91
Target Start/End: Original strand, 20891433 - 20891514
Alignment:
Q  10 caatgctatggttccttatctattagtaaataataatgttctaatgtatatgaatggttcctataaagagttacaacttttg 91  Q
    ||||| |||||||| |||||||| ||||||||||||| ||  |||||||||||||| |||  || |||||||||||||||||    
T  20891433 caatgttatggttcattatctatcagtaaataataatttttcaatgtatatgaatgattctcatgaagagttacaacttttg 20891514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 36 - 91
Target Start/End: Complemental strand, 1302138 - 1302083
Alignment:
Q  36 taaataataatgttctaatgtatatgaatggttcctataaagagttacaacttttg 91  Q
    ||||||||||||||| ||| ||||||||||||||| || |||||||||||||||||    
T  1302138 taaataataatgttccaatatatatgaatggttcccatgaagagttacaacttttg 1302083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 26 - 109
Target Start/End: Complemental strand, 18023445 - 18023362
Alignment:
Q  26 tatctattagtaaataataatgttctaatgtatatgaatggttcctataaagagttacaacttttgatgaagagttacaacttt 109  Q
    ||||||| ||||||||||||||||||||| |||||||||| ||||||| || |||| ||| || || | |||| ||||||||||    
T  18023445 tatctatcagtaaataataatgttctaatatatatgaatgattcctatgaaaagttgcaatttctggtaaagacttacaacttt 18023362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 36 - 91
Target Start/End: Complemental strand, 31081401 - 31081346
Alignment:
Q  36 taaataataatgttctaatgtatatgaatggttcctataaagagttacaacttttg 91  Q
    ||||||||||||||| ||||||||||||||||||| || |||||| ||||||||||    
T  31081401 taaataataatgttccaatgtatatgaatggttcccatgaagagtcacaacttttg 31081346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 36 - 91
Target Start/End: Complemental strand, 33702493 - 33702438
Alignment:
Q  36 taaataataatgttctaatgtatatgaatggttcctataaagagttacaacttttg 91  Q
    |||||||||||||||  |||||||||||||||||| || |||||||||||||||||    
T  33702493 taaataataatgttcctatgtatatgaatggttcccatgaagagttacaacttttg 33702438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 93
Target Start/End: Original strand, 269487 - 269544
Alignment:
Q  36 taaataataatgttctaatgtatatgaatggttcctataaagagttacaacttttgat 93  Q
    ||||||||||||||| ||| ||||||||||||| | |||||||| |||||||||||||    
T  269487 taaataataatgttccaatatatatgaatggtttccataaagagctacaacttttgat 269544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 93
Target Start/End: Complemental strand, 3187365 - 3187282
Alignment:
Q  10 caatgctatggttccttatctattagtaaataataatgttctaatgtatatgaatggttcctataaagagttacaacttttgat 93  Q
    ||||| ||| |||| |||||||| ||||||||||| ||||| |||| ||||||||| |||  ||||| | ||||||||||||||    
T  3187365 caatgttatagttcattatctatcagtaaataatattgttccaatgcatatgaatgattctcataaaaaattacaacttttgat 3187282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 91
Target Start/End: Complemental strand, 31076294 - 31076239
Alignment:
Q  36 taaataataatgttctaatgtatatgaatggttcctataaagagttacaacttttg 91  Q
    ||||||||||||||| ||||||||||||||||| | || |||||| ||||||||||    
T  31076294 taaataataatgttccaatgtatatgaatggtttccatgaagagtcacaacttttg 31076239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 214 - 245
Target Start/End: Original strand, 53422084 - 53422115
Alignment:
Q  214 ttttaggtttaattgcacttttggacccctat 245  Q
    ||||||||||||||||||||||||||||||||    
T  53422084 ttttaggtttaattgcacttttggacccctat 53422115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 121
Target Start/End: Original strand, 29827783 - 29827857
Alignment:
Q  47 gttctaatgtatatgaatggttcctataaagagttacaacttttgatgaagagttacaacttttggttctaaagt 121  Q
    |||| ||| |||||||| | |||| ||  ||| |||||||| ||| ||||||||||||||||||| |||||||||    
T  29827783 gttccaatctatatgaaagattcccatgcagaattacaactcttggtgaagagttacaacttttgattctaaagt 29827857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 121
Target Start/End: Complemental strand, 1302102 - 1302073
Alignment:
Q  92 atgaagagttacaacttttggttctaaagt 121  Q
    ||||||||||||||||||||||||||||||    
T  1302102 atgaagagttacaacttttggttctaaagt 1302073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 121
Target Start/End: Original strand, 4050154 - 4050183
Alignment:
Q  92 atgaagagttacaacttttggttctaaagt 121  Q
    ||||||||||||||||||||||||||||||    
T  4050154 atgaagagttacaacttttggttctaaagt 4050183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 121
Target Start/End: Original strand, 4055288 - 4055317
Alignment:
Q  92 atgaagagttacaacttttggttctaaagt 121  Q
    ||||||||||||||||||||||||||||||    
T  4055288 atgaagagttacaacttttggttctaaagt 4055317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 121
Target Start/End: Complemental strand, 5481346 - 5481317
Alignment:
Q  92 atgaagagttacaacttttggttctaaagt 121  Q
    ||||||||||||||||||||||||||||||    
T  5481346 atgaagagttacaacttttggttctaaagt 5481317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 121
Target Start/End: Complemental strand, 6852810 - 6852781
Alignment:
Q  92 atgaagagttacaacttttggttctaaagt 121  Q
    ||||||||||||||||||||||||||||||    
T  6852810 atgaagagttacaacttttggttctaaagt 6852781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 121
Target Start/End: Complemental strand, 6857913 - 6857884
Alignment:
Q  92 atgaagagttacaacttttggttctaaagt 121  Q
    ||||||||||||||||||||||||||||||    
T  6857913 atgaagagttacaacttttggttctaaagt 6857884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 121
Target Start/End: Original strand, 8465096 - 8465125
Alignment:
Q  92 atgaagagttacaacttttggttctaaagt 121  Q
    ||||||||||||||||||||||||||||||    
T  8465096 atgaagagttacaacttttggttctaaagt 8465125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 121
Target Start/End: Complemental strand, 10584716 - 10584687
Alignment:
Q  92 atgaagagttacaacttttggttctaaagt 121  Q
    ||||||||||||||||||||||||||||||    
T  10584716 atgaagagttacaacttttggttctaaagt 10584687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 121
Target Start/End: Complemental strand, 10591153 - 10591124
Alignment:
Q  92 atgaagagttacaacttttggttctaaagt 121  Q
    ||||||||||||||||||||||||||||||    
T  10591153 atgaagagttacaacttttggttctaaagt 10591124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 121
Target Start/End: Complemental strand, 10672796 - 10672767
Alignment:
Q  92 atgaagagttacaacttttggttctaaagt 121  Q
    ||||||||||||||||||||||||||||||    
T  10672796 atgaagagttacaacttttggttctaaagt 10672767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 121
Target Start/End: Complemental strand, 10677909 - 10677880
Alignment:
Q  92 atgaagagttacaacttttggttctaaagt 121  Q
    ||||||||||||||||||||||||||||||    
T  10677909 atgaagagttacaacttttggttctaaagt 10677880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 121
Target Start/End: Original strand, 20891495 - 20891524
Alignment:
Q  92 atgaagagttacaacttttggttctaaagt 121  Q
    ||||||||||||||||||||||||||||||    
T  20891495 atgaagagttacaacttttggttctaaagt 20891524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 216 - 245
Target Start/End: Complemental strand, 33252801 - 33252772
Alignment:
Q  216 ttaggtttaattgcacttttggacccctat 245  Q
    ||||||||||||||||||||||||||||||    
T  33252801 ttaggtttaattgcacttttggacccctat 33252772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 121
Target Start/End: Complemental strand, 33702457 - 33702428
Alignment:
Q  92 atgaagagttacaacttttggttctaaagt 121  Q
    ||||||||||||||||||||||||||||||    
T  33702457 atgaagagttacaacttttggttctaaagt 33702428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 17 - 119
Target Start/End: Original strand, 18716831 - 18716932
Alignment:
Q  17 atggttccttatctattagtaaataataatgttctaatgtatatgaatggttcctataaagagttacaacttttgatgaagagttacaacttttggttct 116  Q
    ||||||| |||||||| | ||||||||||||| | ||||||||||||||||||| || ||||||||||||| ||| ||||||||||| | ||||||||||    
T  18716831 atggttcattatctatcactaaataataatgtaccaatgtatatgaatggttcccatgaagagttacaactcttggtgaagagttac-agttttggttct 18716929  T
Q  117 aaa 119  Q
    |||    
T  18716930 aaa 18716932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 17 - 121
Target Start/End: Complemental strand, 3409461 - 3409357
Alignment:
Q  17 atggttccttatctattagtaaataataatgttctaatgtatatgaatggttcctataaagagttacaacttttgatgaagagttacaacttttggttct 116  Q
    ||||||| |||||||| | ||||||||||||||| ||||||||||||||||||  || ||||||||||| | ||| | |||||| ||||||||| |||||    
T  3409461 atggttcattatctatcaataaataataatgttccaatgtatatgaatggttctcatgaagagttacaaatcttggtcaagagtaacaacttttagttct 3409362  T
Q  117 aaagt 121  Q
    |||||    
T  3409361 aaagt 3409357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 17 - 119
Target Start/End: Original strand, 18737504 - 18737608
Alignment:
Q  17 atggttccttatctattagtaaataataatgttctaatgtatatgaatggttcctataaagagttacaacttttgatga---agagttacaacttttggt 113  Q
    ||||||| |||||||| | ||||||||||||| | ||||||||||||||||||| || ||||||||||||| ||| |||   |||||||||| |||||||    
T  18737504 atggttcattatctatcactaaataataatgtaccaatgtatatgaatggttcccatgaagagttacaactcttggtgaattagagttacaa-ttttggt 18737602  T
Q  114 tctaaa 119  Q
    ||||||    
T  18737603 tctaaa 18737608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 47 - 121
Target Start/End: Complemental strand, 14643628 - 14643554
Alignment:
Q  47 gttctaatgtatatgaatggttcctataaagagttacaacttttgatgaagagttacaacttttggttctaaagt 121  Q
    |||| |||||||||||||| |||| || || |||||||||| ||| |||||||||||||||||||||||||||||    
T  14643628 gttccaatgtatatgaatgattcccatgaatagttacaactcttggtgaagagttacaacttttggttctaaagt 14643554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 36 - 91
Target Start/End: Original strand, 35091225 - 35091280
Alignment:
Q  36 taaataataatgttctaatgtatatgaatggttcctataaagagttacaacttttg 91  Q
    ||||||||||||||| ||||||||||||||||||| || |||||||||||||||||    
T  35091225 taaataataatgttccaatgtatatgaatggttcccatgaagagttacaacttttg 35091280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 36 - 90
Target Start/End: Original strand, 35096338 - 35096392
Alignment:
Q  36 taaataataatgttctaatgtatatgaatggttcctataaagagttacaactttt 90  Q
    ||||||||||||||| ||||||||||||||||||| || ||||||||||||||||    
T  35096338 taaataataatgttccaatgtatatgaatggttcccatgaagagttacaactttt 35096392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 91
Target Start/End: Complemental strand, 3424225 - 3424152
Alignment:
Q  17 atggttccttatctattagtaaataataatgttctaatgtatatgaatggttcctataaagagttacaacttttg 91  Q
    ||||||| |||||||| | ||||||||||||||| |||||||||| |||||||  || |||||||||||||||||    
T  3424225 atggttcattatctatcaataaataataatgttccaatgtatatg-atggttctcatgaagagttacaacttttg 3424152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 75 - 121
Target Start/End: Original strand, 22119056 - 22119102
Alignment:
Q  75 aagagttacaacttttgatgaagagttacaacttttggttctaaagt 121  Q
    ||||||| ||||| |||||||||||||||||||||||||||||||||    
T  22119056 aagagttgcaactcttgatgaagagttacaacttttggttctaaagt 22119102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 87
Target Start/End: Complemental strand, 32429146 - 32429076
Alignment:
Q  17 atggttccttatctattagtaaataataatgttctaatgtatatgaatggttcctataaagagttacaact 87  Q
    ||||||| |||||||| | ||||||||||||||| |||||||||||||| || | || |||||||||||||    
T  32429146 atggttcattatctatcaataaataataatgttccaatgtatatgaatgatttccatgaagagttacaact 32429076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 47 - 121
Target Start/End: Original strand, 47071712 - 47071786
Alignment:
Q  47 gttctaatgtatatgaatggttcctataaagagttacaacttttgatgaagagttacaacttttggttctaaagt 121  Q
    |||| |||||||||||||| ||   || ||||||||||||| ||| |||||||||||||||||||||| ||||||    
T  47071712 gttccaatgtatatgaatgattttcatgaagagttacaactcttggtgaagagttacaacttttggttgtaaagt 47071786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 108
Target Start/End: Complemental strand, 30019738 - 30019677
Alignment:
Q  47 gttctaatgtatatgaatggttcctataaagagttacaacttttgatgaagagttacaactt 108  Q
    |||| |||||||||||| | |||| || ||||||||||||| ||| ||||||||||||||||    
T  30019738 gttccaatgtatatgaaagattcccatgaagagttacaactcttggtgaagagttacaactt 30019677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 214 - 245
Target Start/End: Original strand, 29432042 - 29432073
Alignment:
Q  214 ttttaggtttaattgcacttttggacccctat 245  Q
    ||||||||||||||||||||||||||||||||    
T  29432042 ttttaggtttaattgcacttttggacccctat 29432073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 119
Target Start/End: Complemental strand, 34601922 - 34601855
Alignment:
Q  52 aatgtatatgaatggttcctataaagagttacaacttttgatgaagagttacaacttttggttctaaa 119  Q
    |||||||||||||| |||  || |||||||||||||| |  |||| ||||||||||||| ||||||||    
T  34601922 aatgtatatgaatgattctcatgaagagttacaacttctcgtgaaaagttacaacttttagttctaaa 34601855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 214 - 245
Target Start/End: Complemental strand, 34957675 - 34957644
Alignment:
Q  214 ttttaggtttaattgcacttttggacccctat 245  Q
    ||||||||||||||||||||||||||||||||    
T  34957675 ttttaggtttaattgcacttttggacccctat 34957644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 215 - 245
Target Start/End: Original strand, 37973509 - 37973539
Alignment:
Q  215 tttaggtttaattgcacttttggacccctat 245  Q
    |||||||||||||||||||||||||||||||    
T  37973509 tttaggtttaattgcacttttggacccctat 37973539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 121
Target Start/End: Complemental strand, 3424171 - 3424142
Alignment:
Q  92 atgaagagttacaacttttggttctaaagt 121  Q
    ||||||||||||||||||||||||||||||    
T  3424171 atgaagagttacaacttttggttctaaagt 3424142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 18671181 - 18671234
Alignment:
Q  17 atggttccttatctattagtaaataataatgttctaatgtatatgaatggttcc 70  Q
    ||||||| |||| ||| | ||||||||||||| | |||||||||||||||||||    
T  18671181 atggttcattatttatcaataaataataatgtaccaatgtatatgaatggttcc 18671234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 121
Target Start/End: Original strand, 35091261 - 35091290
Alignment:
Q  92 atgaagagttacaacttttggttctaaagt 121  Q
    ||||||||||||||||||||||||||||||    
T  35091261 atgaagagttacaacttttggttctaaagt 35091290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 209 - 245
Target Start/End: Original strand, 3770169 - 3770205
Alignment:
Q  209 gaaacttttaggtttaattgcacttttggacccctat 245  Q
    |||| ||||||| ||||||||||||||||||||||||    
T  3770169 gaaaattttaggcttaattgcacttttggacccctat 3770205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 213 - 245
Target Start/End: Complemental strand, 13021298 - 13021266
Alignment:
Q  213 cttttaggtttaattgcacttttggacccctat 245  Q
    |||||||| ||||||||||||||||||||||||    
T  13021298 cttttaggcttaattgcacttttggacccctat 13021266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 217 - 245
Target Start/End: Complemental strand, 19869473 - 19869445
Alignment:
Q  217 taggtttaattgcacttttggacccctat 245  Q
    |||||||||||||||||||||||||||||    
T  19869473 taggtttaattgcacttttggacccctat 19869445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 217 - 245
Target Start/End: Complemental strand, 23770082 - 23770054
Alignment:
Q  217 taggtttaattgcacttttggacccctat 245  Q
    |||||||||||||||||||||||||||||    
T  23770082 taggtttaattgcacttttggacccctat 23770054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 213 - 245
Target Start/End: Complemental strand, 55586936 - 55586904
Alignment:
Q  213 cttttaggtttaattgcacttttggacccctat 245  Q
    |||||||| ||||||||||||||||||||||||    
T  55586936 cttttaggcttaattgcacttttggacccctat 55586904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 36 - 121
Target Start/End: Original strand, 2024354 - 2024439
Alignment:
Q  36 taaataataatgttctaatgtatatgaatggttcctataaagagttacaacttttgatgaagagttacaacttttggttctaaagt 121  Q
    ||||||||||||||| |||||||||||||||||||  | ||||||||||||| ||| | |||| | ||||||||||||||||||||    
T  2024354 taaataataatgttccaatgtatatgaatggttcccgtgaagagttacaactcttggtcaagattaacaacttttggttctaaagt 2024439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 36 - 91
Target Start/End: Complemental strand, 9872318 - 9872263
Alignment:
Q  36 taaataataatgttctaatgtatatgaatggttcctataaagagttacaacttttg 91  Q
    ||||||||||||||| ||||||||||||||||||| || |||||||||||||||||    
T  9872318 taaataataatgttccaatgtatatgaatggttcccatgaagagttacaacttttg 9872263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 36 - 91
Target Start/End: Complemental strand, 9877433 - 9877378
Alignment:
Q  36 taaataataatgttctaatgtatatgaatggttcctataaagagttacaacttttg 91  Q
    ||||||||||||||| ||||||||||||||||||| || |||||||||||||||||    
T  9877433 taaataataatgttccaatgtatatgaatggttcccatgaagagttacaacttttg 9877378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 36 - 91
Target Start/End: Original strand, 39904155 - 39904210
Alignment:
Q  36 taaataataatgttctaatgtatatgaatggttcctataaagagttacaacttttg 91  Q
    ||||||||||||||| ||||||||||||||||||| || |||||||||||||||||    
T  39904155 taaataataatgttccaatgtatatgaatggttcccatgaagagttacaacttttg 39904210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 47 - 121
Target Start/End: Complemental strand, 35368725 - 35368651
Alignment:
Q  47 gttctaatgtatatgaatggttcctataaagagttacaacttttgatgaagagttacaacttttggttctaaagt 121  Q
    |||| |||||||||||| | |||  |||||||||||||||| |||||||| |||||||||||||| |||||||||    
T  35368725 gttccaatgtatatgaaagattctcataaagagttacaactcttgatgaaaagttacaacttttgattctaaagt 35368651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 47 - 119
Target Start/End: Complemental strand, 43540666 - 43540594
Alignment:
Q  47 gttctaatgtatatgaatggttcctataaagagttacaacttttgatgaagagttacaacttttggttctaaa 119  Q
    |||| |||||||||||||  || | || ||||||||||||| ||| |||||||||||||||||||||||||||    
T  43540666 gttccaatgtatatgaataattaccatgaagagttacaactcttggtgaagagttacaacttttggttctaaa 43540594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 10 - 121
Target Start/End: Original strand, 4555879 - 4555990
Alignment:
Q  10 caatgctatggttccttatctattagtaaataataatgttctaatgtatatgaatggttcctataaagagttacaacttttgatgaagagttacaacttt 109  Q
    ||||| ||||||||  ||||||| ||||||||||||| ||  |||||||||||||| || |  | ||||| || |||||||||| || ||||||||||||    
T  4555879 caatgttatggttcactatctataagtaaataataatttttcaatgtatatgaatgatttccgtgaagaggtataacttttgataaaaagttacaacttt 4555978  T
Q  110 tggttctaaagt 121  Q
    |  |||||||||    
T  4555979 taattctaaagt 4555990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 211 - 245
Target Start/End: Original strand, 1055363 - 1055397
Alignment:
Q  211 aacttttaggtttaattgcacttttggacccctat 245  Q
    |||||||||||||||||||||||||||||||||||    
T  1055363 aacttttaggtttaattgcacttttggacccctat 1055397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 91
Target Start/End: Original strand, 39909268 - 39909323
Alignment:
Q  36 taaataataatgttctaatgtatatgaatggttcctataaagagttacaacttttg 91  Q
    ||||||||||||||| |||||||||||||||||   |  |||||||||||||||||    
T  39909268 taaataataatgttccaatgtatatgaatggtttacacgaagagttacaacttttg 39909323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 244
Target Start/End: Complemental strand, 16521443 - 16521413
Alignment:
Q  214 ttttaggtttaattgcacttttggaccccta 244  Q
    |||||||||||||||||||||||||||||||    
T  16521443 ttttaggtttaattgcacttttggaccccta 16521413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 215 - 245
Target Start/End: Original strand, 29183129 - 29183159
Alignment:
Q  215 tttaggtttaattgcacttttggacccctat 245  Q
    |||||||||||||||||||||||||||||||    
T  29183129 tttaggtttaattgcacttttggacccctat 29183159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 121
Target Start/End: Complemental strand, 9872282 - 9872253
Alignment:
Q  92 atgaagagttacaacttttggttctaaagt 121  Q
    ||||||||||||||||||||||||||||||    
T  9872282 atgaagagttacaacttttggttctaaagt 9872253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 121
Target Start/End: Complemental strand, 9877397 - 9877368
Alignment:
Q  92 atgaagagttacaacttttggttctaaagt 121  Q
    ||||||||||||||||||||||||||||||    
T  9877397 atgaagagttacaacttttggttctaaagt 9877368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 216 - 245
Target Start/End: Complemental strand, 25566858 - 25566829
Alignment:
Q  216 ttaggtttaattgcacttttggacccctat 245  Q
    ||||||||||||||||||||||||||||||    
T  25566858 ttaggtttaattgcacttttggacccctat 25566829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 121
Target Start/End: Original strand, 39904191 - 39904220
Alignment:
Q  92 atgaagagttacaacttttggttctaaagt 121  Q
    ||||||||||||||||||||||||||||||    
T  39904191 atgaagagttacaacttttggttctaaagt 39904220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 217 - 245
Target Start/End: Complemental strand, 5891795 - 5891767
Alignment:
Q  217 taggtttaattgcacttttggacccctat 245  Q
    |||||||||||||||||||||||||||||    
T  5891795 taggtttaattgcacttttggacccctat 5891767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 217 - 245
Target Start/End: Original strand, 19849550 - 19849578
Alignment:
Q  217 taggtttaattgcacttttggacccctat 245  Q
    |||||||||||||||||||||||||||||    
T  19849550 taggtttaattgcacttttggacccctat 19849578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 54 - 121
Target Start/End: Complemental strand, 2248948 - 2248881
Alignment:
Q  54 tgtatatgaatggttcctataaagagttacaacttttgatgaagagttacaacttttggttctaaagt 121  Q
    |||||||||||||||| ||| ||||||||||||| ||| ||||||||||| |||||||||||||||||    
T  2248948 tgtatatgaatggttcgtatgaagagttacaactcttgctgaagagttactacttttggttctaaagt 2248881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 36 - 91
Target Start/End: Original strand, 12857099 - 12857154
Alignment:
Q  36 taaataataatgttctaatgtatatgaatggttcctataaagagttacaacttttg 91  Q
    ||||||||||||||| ||||||||||||||||||| || |||||||||||||||||    
T  12857099 taaataataatgttccaatgtatatgaatggttcccatgaagagttacaacttttg 12857154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 36 - 91
Target Start/End: Original strand, 14610639 - 14610694
Alignment:
Q  36 taaataataatgttctaatgtatatgaatggttcctataaagagttacaacttttg 91  Q
    ||||||||||||||| ||||||||||||||||||| || |||||||||||||||||    
T  14610639 taaataataatgttccaatgtatatgaatggttcccatgaagagttacaacttttg 14610694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 36 - 91
Target Start/End: Original strand, 26051331 - 26051386
Alignment:
Q  36 taaataataatgttctaatgtatatgaatggttcctataaagagttacaacttttg 91  Q
    ||||||||||||||| ||||||||||||||||||| || |||||||||||||||||    
T  26051331 taaataataatgttccaatgtatatgaatggttcccatgaagagttacaacttttg 26051386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 36 - 91
Target Start/End: Original strand, 26056444 - 26056499
Alignment:
Q  36 taaataataatgttctaatgtatatgaatggttcctataaagagttacaacttttg 91  Q
    ||||||||||||||| ||||||||||||||||||| || |||||||||||||||||    
T  26056444 taaataataatgttccaatgtatatgaatggttcccatgaagagttacaacttttg 26056499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 36 - 91
Target Start/End: Original strand, 26060690 - 26060745
Alignment:
Q  36 taaataataatgttctaatgtatatgaatggttcctataaagagttacaacttttg 91  Q
    ||||||||||||||| ||||||||||||||||||| || |||||||||||||||||    
T  26060690 taaataataatgttccaatgtatatgaatggttcccatgaagagttacaacttttg 26060745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 36 - 91
Target Start/End: Original strand, 26065803 - 26065858
Alignment:
Q  36 taaataataatgttctaatgtatatgaatggttcctataaagagttacaacttttg 91  Q
    ||||||||||||||| ||||||||||||||||||| || |||||||||||||||||    
T  26065803 taaataataatgttccaatgtatatgaatggttcccatgaagagttacaacttttg 26065858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 91
Target Start/End: Original strand, 12851986 - 12852041
Alignment:
Q  36 taaataataatgttctaatgtatatgaatggttcctataaagagttacaacttttg 91  Q
    |||||||||||||   ||||||||||||||||||| || |||||||||||||||||    
T  12851986 taaataataatgtaacaatgtatatgaatggttcccatgaagagttacaacttttg 12852041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 215 - 245
Target Start/End: Original strand, 19778270 - 19778300
Alignment:
Q  215 tttaggtttaattgcacttttggacccctat 245  Q
    |||||||||||||||||||||||||||||||    
T  19778270 tttaggtttaattgcacttttggacccctat 19778300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 121
Target Start/End: Original strand, 12852022 - 12852051
Alignment:
Q  92 atgaagagttacaacttttggttctaaagt 121  Q
    ||||||||||||||||||||||||||||||    
T  12852022 atgaagagttacaacttttggttctaaagt 12852051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 121
Target Start/End: Original strand, 12857135 - 12857164
Alignment:
Q  92 atgaagagttacaacttttggttctaaagt 121  Q
    ||||||||||||||||||||||||||||||    
T  12857135 atgaagagttacaacttttggttctaaagt 12857164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 121
Target Start/End: Original strand, 26051367 - 26051396
Alignment:
Q  92 atgaagagttacaacttttggttctaaagt 121  Q
    ||||||||||||||||||||||||||||||    
T  26051367 atgaagagttacaacttttggttctaaagt 26051396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 121
Target Start/End: Original strand, 26056480 - 26056509
Alignment:
Q  92 atgaagagttacaacttttggttctaaagt 121  Q
    ||||||||||||||||||||||||||||||    
T  26056480 atgaagagttacaacttttggttctaaagt 26056509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 121
Target Start/End: Original strand, 26060726 - 26060755
Alignment:
Q  92 atgaagagttacaacttttggttctaaagt 121  Q
    ||||||||||||||||||||||||||||||    
T  26060726 atgaagagttacaacttttggttctaaagt 26060755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 121
Target Start/End: Original strand, 26065839 - 26065868
Alignment:
Q  92 atgaagagttacaacttttggttctaaagt 121  Q
    ||||||||||||||||||||||||||||||    
T  26065839 atgaagagttacaacttttggttctaaagt 26065868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 121
Target Start/End: Complemental strand, 37459800 - 37459731
Alignment:
Q  52 aatgtatatgaatggttcctataaagagttacaacttttgatgaagagttacaacttttggttctaaagt 121  Q
    |||||||||||||| |||| || ||||||| |  |||||| |||||||||| |||||||| || ||||||    
T  37459800 aatgtatatgaatgattcccatgaagagttcctgcttttggtgaagagttaaaacttttgattttaaagt 37459731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 217 - 245
Target Start/End: Complemental strand, 30757539 - 30757511
Alignment:
Q  217 taggtttaattgcacttttggacccctat 245  Q
    |||||||||||||||||||||||||||||    
T  30757539 taggtttaattgcacttttggacccctat 30757511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 217 - 245
Target Start/End: Original strand, 37047663 - 37047691
Alignment:
Q  217 taggtttaattgcacttttggacccctat 245  Q
    |||||||||||||||||||||||||||||    
T  37047663 taggtttaattgcacttttggacccctat 37047691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 47 - 121
Target Start/End: Original strand, 173664 - 173738
Alignment:
Q  47 gttctaatgtatatgaatggttcctataaagagttacaacttttgatgaagagttacaacttttggttctaaagt 121  Q
    |||| |||||||||||||| |||| || || |||||||||| ||| |||||||||||||||||||||||||||||    
T  173664 gttccaatgtatatgaatgattcccatgaatagttacaactcttggtgaagagttacaacttttggttctaaagt 173738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 36 - 91
Target Start/End: Original strand, 21276083 - 21276138
Alignment:
Q  36 taaataataatgttctaatgtatatgaatggttcctataaagagttacaacttttg 91  Q
    ||||||||||||||| ||||||||||||||||||| || |||||||||||||||||    
T  21276083 taaataataatgttccaatgtatatgaatggttcccatgaagagttacaacttttg 21276138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 47 - 121
Target Start/End: Original strand, 12909575 - 12909649
Alignment:
Q  47 gttctaatgtatatgaatggttcctataaagagttacaacttttgatgaagagttacaacttttggttctaaagt 121  Q
    |||| |||||||||||||| |||  || || |||||||||| ||| |||||||||||||||||||||||||||||    
T  12909575 gttccaatgtatatgaatgattctcatgaaaagttacaactcttggtgaagagttacaacttttggttctaaagt 12909649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 47 - 121
Target Start/End: Complemental strand, 21936510 - 21936436
Alignment:
Q  47 gttctaatgtatatgaatggttcctataaagagttacaacttttgatgaagagttacaacttttggttctaaagt 121  Q
    |||| ||||||||| || | || | |||||||||||||||| ||| |||||||||||||||||||||||||||||    
T  21936510 gttcaaatgtatataaaagatttccataaagagttacaactcttggtgaagagttacaacttttggttctaaagt 21936436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 47 - 117
Target Start/End: Original strand, 12934682 - 12934752
Alignment:
Q  47 gttctaatgtatatgaatggttcctataaagagttacaacttttgatgaagagttacaacttttggttcta 117  Q
    |||| |||||||||||||| |||  || || |||||||||| ||| |||||||||||||||||||||||||    
T  12934682 gttccaatgtatatgaatgattctcatgaaaagttacaactcttggtgaagagttacaacttttggttcta 12934752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 121
Target Start/End: Original strand, 21276119 - 21276148
Alignment:
Q  92 atgaagagttacaacttttggttctaaagt 121  Q
    ||||||||||||||||||||||||||||||    
T  21276119 atgaagagttacaacttttggttctaaagt 21276148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 217 - 245
Target Start/End: Complemental strand, 15273294 - 15273266
Alignment:
Q  217 taggtttaattgcacttttggacccctat 245  Q
    |||||||||||||||||||||||||||||    
T  15273294 taggtttaattgcacttttggacccctat 15273266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 36 - 91
Target Start/End: Complemental strand, 14917276 - 14917221
Alignment:
Q  36 taaataataatgttctaatgtatatgaatggttcctataaagagttacaacttttg 91  Q
    ||||||||||||||| ||||||||||||||||||| || |||||||||||||||||    
T  14917276 taaataataatgttccaatgtatatgaatggttcccatgaagagttacaacttttg 14917221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 36 - 91
Target Start/End: Complemental strand, 17720420 - 17720365
Alignment:
Q  36 taaataataatgttctaatgtatatgaatggttcctataaagagttacaacttttg 91  Q
    ||||||||||||||| ||||||||||||||||||| || |||||||||||||||||    
T  17720420 taaataataatgttccaatgtatatgaatggttcccatgaagagttacaacttttg 17720365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 36 - 90
Target Start/End: Original strand, 39178909 - 39178963
Alignment:
Q  36 taaataataatgttctaatgtatatgaatggttcctataaagagttacaactttt 90  Q
    ||||||||||||||| ||||||||||||||||||| || ||||||||||||||||    
T  39178909 taaataataatgttccaatgtatatgaatggttcccatgaagagttacaactttt 39178963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 44 - 121
Target Start/End: Complemental strand, 20892203 - 20892126
Alignment:
Q  44 aatgttctaatgtatatgaatggttcctataaagagttacaacttttgatgaagagttacaacttttggttctaaagt 121  Q
    ||||||| ||||||||||||||||||  || ||||||||||||| ||| |||| || |||||||||||||| ||||||    
T  20892203 aatgttccaatgtatatgaatggttctcatgaagagttacaactcttggtgaaaagatacaacttttggttttaaagt 20892126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 36 - 91
Target Start/End: Complemental strand, 17720093 - 17720038
Alignment:
Q  36 taaataataatgttctaatgtatatgaatggttcctataaagagttacaacttttg 91  Q
    ||||||||||||||| ||||||||||||| ||||| || |||||||||||||||||    
T  17720093 taaataataatgttccaatgtatatgaatagttcccatgaagagttacaacttttg 17720038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 36 - 91
Target Start/End: Complemental strand, 30283344 - 30283289
Alignment:
Q  36 taaataataatgttctaatgtatatgaatggttcctataaagagttacaacttttg 91  Q
    ||||||||||||||| |||||| |||||||||||| || |||||||||||||||||    
T  30283344 taaataataatgttccaatgtacatgaatggttcccatgaagagttacaacttttg 30283289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 47 - 121
Target Start/End: Original strand, 42780494 - 42780568
Alignment:
Q  47 gttctaatgtatatgaatggttcctataaagagttacaacttttgatgaagagttacaacttttggttctaaagt 121  Q
    |||| |||||||||||| | |||  || ||||||||||||||||| | |||||| ||||||||||||||||||||    
T  42780494 gttccaatgtatatgaaagattctcatgaagagttacaacttttggtcaagagtaacaacttttggttctaaagt 42780568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 36 - 90
Target Start/End: Original strand, 45120697 - 45120751
Alignment:
Q  36 taaataataatgttctaatgtatatgaatggttcctataaagagttacaactttt 90  Q
    ||||||||||||||  ||||||||||||||||||| || ||||||||||||||||    
T  45120697 taaataataatgtttcaatgtatatgaatggttcccatgaagagttacaactttt 45120751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 214 - 245
Target Start/End: Original strand, 315013 - 315044
Alignment:
Q  214 ttttaggtttaattgcacttttggacccctat 245  Q
    ||||||||||||||||||||||||||||||||    
T  315013 ttttaggtttaattgcacttttggacccctat 315044  T

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Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 244
Target Start/End: Original strand, 35698880 - 35698910
Alignment:
Q  214 ttttaggtttaattgcacttttggaccccta 244  Q
    |||||||||||||||||||||||||||||||    
T  35698880 ttttaggtttaattgcacttttggaccccta 35698910  T

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Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 121
Target Start/End: Complemental strand, 14917240 - 14917211
Alignment:
Q  92 atgaagagttacaacttttggttctaaagt 121  Q
    ||||||||||||||||||||||||||||||    
T  14917240 atgaagagttacaacttttggttctaaagt 14917211  T

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Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 121
Target Start/End: Complemental strand, 17720057 - 17720028
Alignment:
Q  92 atgaagagttacaacttttggttctaaagt 121  Q
    ||||||||||||||||||||||||||||||    
T  17720057 atgaagagttacaacttttggttctaaagt 17720028  T

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Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 121
Target Start/End: Complemental strand, 17720384 - 17720355
Alignment:
Q  92 atgaagagttacaacttttggttctaaagt 121  Q
    ||||||||||||||||||||||||||||||    
T  17720384 atgaagagttacaacttttggttctaaagt 17720355  T

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Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 217 - 245
Target Start/End: Original strand, 11362559 - 11362587
Alignment:
Q  217 taggtttaattgcacttttggacccctat 245  Q
    |||||||||||||||||||||||||||||    
T  11362559 taggtttaattgcacttttggacccctat 11362587  T

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Target: scaffold0006 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 75 - 121
Target Start/End: Original strand, 144419 - 144465
Alignment:
Q  75 aagagttacaacttttgatgaagagttacaacttttggttctaaagt 121  Q
    ||||||||||||| ||| |||||||||||||||||||||||||||||    
T  144419 aagagttacaactcttggtgaagagttacaacttttggttctaaagt 144465  T

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Target: scaffold0223 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 91
Target Start/End: Complemental strand, 1913 - 1858
Alignment:
Q  36 taaataataatgttctaatgtatatgaatggttcctataaagagttacaacttttg 91  Q
    |||||| |||||||| ||||||||||||||||||| || ||||| |||||||||||    
T  1913 taaatagtaatgttccaatgtatatgaatggttcccatgaagagatacaacttttg 1858  T

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Target: scaffold0283 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0283
Description:

Target: scaffold0283; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 214 - 245
Target Start/End: Original strand, 1179 - 1210
Alignment:
Q  214 ttttaggtttaattgcacttttggacccctat 245  Q
    ||||||||||||||||||||||||||||||||    
T  1179 ttttaggtttaattgcacttttggacccctat 1210  T

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