View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3425_low_77 (Length: 239)
Name: NF3425_low_77
Description: NF3425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3425_low_77 |
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Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-122; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 1058510 - 1058730
Alignment:
| Q |
1 |
attgcagggtttgatggggttgaaatccatggggctaatggctacatacttgagcaattcatgaaagatcaagtgaacgacagaacagatgaatatggtg |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1058510 |
attgcagggtttgatggggttgaaatccatggggctaatggctacatacttgagcaattcatgaaagatcaagtgaacgacagaacagatgaatatggtg |
1058609 |
T |
|
| Q |
101 |
gatcccttgagaaccgttgtcggattgttttggaagttgttgaagctgttgcaaatgagataggtgcagatagaactggaattagattatcacctttttc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1058610 |
gatcccttgagaaccgttgtcggattgttttggaagttgttgaagctgttgcaaatgagataggtgcagatagaactggaattagattatcacctttttc |
1058709 |
T |
|
| Q |
201 |
agaatatgcagaatgtgtaga |
221 |
Q |
| |
|
||||||||||||||||||||| |
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|
| T |
1058710 |
agaatatgcagaatgtgtaga |
1058730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 1071329 - 1071545
Alignment:
| Q |
1 |
attgcagggtttgatggggttgaaatccatggggctaatggctacatacttgagcaattcatgaaagatcaagtgaacgacagaacagatgaatatggtg |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| ||| |||||||| | ||||| ||||||||||||||| ||||||| ||||| |||||||| ||||||| |
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|
| T |
1071329 |
attgcaggatttgatggggttgaaatccatggagctcatggctacctccttgaacaattcatgaaagataaagtgaatgacaggacagatgagtatggtg |
1071428 |
T |
|
| Q |
101 |
gatcccttgagaaccgttgtcggattgttttggaagttgttgaagctgttgcaaatgagataggtgcagatagaactggaattagattatcacctttttc |
200 |
Q |
| |
|
||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |||| ||| |||||| ||||||||||||||| | |
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|
| T |
1071429 |
gatcccttgagaaccgttgtcggtttgctttggaagttgttgaagctgttgcaaatgagataggaacagaaagagttggaataagattatcaccttttgc |
1071528 |
T |
|
| Q |
201 |
agaatatgcagaatgtg |
217 |
Q |
| |
|
||| ||| ||||||||| |
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|
| T |
1071529 |
agagtattcagaatgtg |
1071545 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 1065602 - 1065818
Alignment:
| Q |
1 |
attgcagggtttgatggggttgaaatccatggggctaatggctacatacttgagcaattcatgaaagatcaagtgaacgacagaacagatgaatatggtg |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| ||| |||||||| | ||||||||||||||||||||| ||||||| ||||| |||||||||||||||| |
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| T |
1065602 |
attgcaggatttgatggggttgaaatccatggagctcatggctacctccttgagcaattcatgaaagataaagtgaatgacaggacagatgaatatggtg |
1065701 |
T |
|
| Q |
101 |
gatcccttgagaaccgttgtcggattgttttggaagttgttgaagctgttgcaaatgagataggtgcagatagaactggaattagattatcacctttttc |
200 |
Q |
| |
|
| || || |||||||| ||||| ||| |||||||||||||||||||||||||||||||||||| ||||| ||| |||||| ||||||||||||||| | |
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|
| T |
1065702 |
ggtctctggagaaccgctgtcgatttgctttggaagttgttgaagctgttgcaaatgagataggagcagaaagagttggaataagattatcaccttttgc |
1065801 |
T |
|
| Q |
201 |
agaatatgcagaatgtg |
217 |
Q |
| |
|
|| ||||||||||||| |
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|
| T |
1065802 |
ggagtatgcagaatgtg |
1065818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 1043987 - 1044199
Alignment:
| Q |
1 |
attgcagggtttgatggggttgaaatccatggggctaatggctacatacttgagcaattcatgaaagatcaagtgaacgacagaacagatgaatatggtg |
100 |
Q |
| |
|
|||| ||| |||||||| |||||||||||||| ||| |||||||| ||||||| ||||||||||||||| ||||||| ||||||||||||||||| |||| |
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|
| T |
1043987 |
attgaaggttttgatggagttgaaatccatggagctcatggctacctacttgaacaattcatgaaagataaagtgaatgacagaacagatgaatacggtg |
1044086 |
T |
|
| Q |
101 |
gatcccttgagaaccgttgtcggattgttttggaagttgttgaagctgttgcaaatgagataggtgcagatagaactggaattagattatcacctttttc |
200 |
Q |
| |
|
||||||| ||||| |||||||| || |||||||||||||||||| |||| ||||||||||| ||||||| | |||||||||| ||||||||||| | |
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|
| T |
1044087 |
gatccctcgagaatcgttgtcgatttcctttggaagttgttgaagcagttgtgaatgagataggagcagataaagttggaattagactatcaccttttgc |
1044186 |
T |
|
| Q |
201 |
agaatatgcagaa |
213 |
Q |
| |
|
||||||||||||| |
|
|
| T |
1044187 |
agaatatgcagaa |
1044199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 1053245 - 1053442
Alignment:
| Q |
1 |
attgcagggtttgatggggttgaaatccatggggctaatggctacatacttgagcaattcatgaaagatcaagtgaacgacagaacagatgaatatggtg |
100 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||| ||| |||||||| || |||| ||||||||||||||| ||| ||||||||||||||||||||||||| |
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|
| T |
1053245 |
attgtaggttttgatggggttgaaatccatggagctcatggctacctagttgaacaattcatgaaagataaagcaaacgacagaacagatgaatatggtg |
1053344 |
T |
|
| Q |
101 |
gatcccttgagaaccgttgtcggattgttttggaagttgttgaagctgttgcaaatgagataggtgcagatagaactggaattagattatcacctttt |
198 |
Q |
| |
|
|| ||||||| || |||||| | ||||||||||| |||||||||||||||||||||||||||||||||| ||| |||||| | ||||||||||||| |
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|
| T |
1053345 |
gaacccttgaaaatcgttgtagatttgttttggaaattgttgaagctgttgcaaatgagataggtgcagaaagagttggaataaaattatcacctttt |
1053442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 1033600 - 1033797
Alignment:
| Q |
1 |
attgcagggtttgatggggttgaaatccatggggctaatggctacatacttgagcaattcatgaaagatcaagtgaacgacagaacagatgaatatggtg |
100 |
Q |
| |
|
|||||||| |||||||| |||||| | ||||| ||| |||||||| ||||||| ||||||||||||||| ||||||| || ||||||||||||||||||| |
|
|
| T |
1033600 |
attgcaggttttgatggtgttgaacttcatggagctcatggctacctacttgaacaattcatgaaagataaagtgaatgatagaacagatgaatatggtg |
1033699 |
T |
|
| Q |
101 |
gatcccttgagaaccgttgtcggattgttttggaagttgttgaagctgttgcaaatgagataggtgcagatagaactggaattagattatcacctttt |
198 |
Q |
| |
|
||||||||||||| |||||||| ||| |||||||||||||| ||||||| ||||||||||| ||||| ||| |||||||||||||||||||||| |
|
|
| T |
1033700 |
gatcccttgagaatcgttgtcgatttgcattggaagttgttgacgctgttgtgaatgagataggagcagaaagagttggaattagattatcacctttt |
1033797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 10 - 203
Target Start/End: Original strand, 1046579 - 1046772
Alignment:
| Q |
10 |
tttgatggggttgaaatccatggggctaatggctacatacttgagcaattcatgaaagatcaagtgaacgacagaacagatgaatatggtggatcccttg |
109 |
Q |
| |
|
||||||||||||||||| | |||||||| ||| ||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| | |||| |
|
|
| T |
1046579 |
tttgatggggttgaaattcgtggggctactggatacctacttgagcaattcatgaaagataaagtgaatgacagaacagatgaatatggtggaactcttg |
1046678 |
T |
|
| Q |
110 |
agaaccgttgtcggattgttttggaagttgttgaagctgttgcaaatgagataggtgcagatagaactggaattagattatcacctttttcaga |
203 |
Q |
| |
|
| ||||||||| ||||||||||| ||||||||||||||| ||||||||| ||||| || ||| |||||| | | |||||||||||||||| |
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|
| T |
1046679 |
aaaaccgttgtaaatttgttttggaaattgttgaagctgttgtaaatgagattggtgccgaaagagttggaataaaactatcacctttttcaga |
1046772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 1640956 - 1640740
Alignment:
| Q |
1 |
attgcagggtttgatggggttgaaatccatggggctaatggctacatacttgagcaattcatgaaagatcaagtgaacgacagaacagatgaatatggtg |
100 |
Q |
| |
|
|||||||| |||||||| ||||| |||||||||||| | || ||| ||||||||||||| ||||||||| ||||||| ||| |||| ||| |||| |||| |
|
|
| T |
1640956 |
attgcaggttttgatggagttgagatccatggggctcacggttacctacttgagcaatttatgaaagataaagtgaatgaccgaactgataaatacggtg |
1640857 |
T |
|
| Q |
101 |
gatcccttgagaaccgttgtcggattgttttggaagttgttgaagctgttgcaaatgagataggtgcagatagaactggaattagattatcacctttttc |
200 |
Q |
| |
|
|| ||||||| ||||||||||| | | ||||||| |||||||||| |||| ||||||||||||||||| ||| ||||||||||||||| ||||| | |
|
|
| T |
1640856 |
gaacccttgaaaaccgttgtcgattcgctttggaaattgttgaagcagttgtgaatgagataggtgcagaaagagttggaattagattatcgcctttcgc |
1640757 |
T |
|
| Q |
201 |
agaatatgcagaatgtg |
217 |
Q |
| |
|
|||||||| |||||||| |
|
|
| T |
1640756 |
agaatatggagaatgtg |
1640740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 84; Significance: 5e-40; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 44171447 - 44171260
Alignment:
| Q |
1 |
attgcagggtttgatggggttgaaatccatggggctaatggctacatacttgagcaattcatgaaagatcaagtgaacgacagaacagatgaatatggtg |
100 |
Q |
| |
|
|||||||| |||||||| || ||||| ||||| ||| |||||||| ||||||| ||||||||||| ||| ||||||| | || ||||||||||||||||| |
|
|
| T |
44171447 |
attgcaggttttgatggtgtggaaattcatggagctcatggctacctacttgaacaattcatgaaggataaagtgaatggcaaaacagatgaatatggtg |
44171348 |
T |
|
| Q |
101 |
gatcccttgagaaccgttgtcggattgttttggaagttgttgaagctgttgcaaatgagataggtgcagatagaactggaattagatt |
188 |
Q |
| |
|
||||||| |||||||| ||| || ||| |||||||||||||||||||||| ||||||||||| ||||| | | |||||||||||| |
|
|
| T |
44171347 |
gatccctagagaaccgatgttggtttggattggaagttgttgaagctgttgtgaatgagataggagcagaaaaagttggaattagatt |
44171260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 44191743 - 44191556
Alignment:
| Q |
1 |
attgcagggtttgatggggttgaaatccatggggctaatggctacatacttgagcaattcatgaaagatcaagtgaacgacagaacagatgaatatggtg |
100 |
Q |
| |
|
|||||||| |||||||| || ||||| ||||| ||| |||||||| ||||||| ||||||||||| ||| ||||||| | || ||||||||||||||||| |
|
|
| T |
44191743 |
attgcaggttttgatggtgtggaaattcatggagctcatggctacctacttgaacaattcatgaaggataaagtgaatggcaaaacagatgaatatggtg |
44191644 |
T |
|
| Q |
101 |
gatcccttgagaaccgttgtcggattgttttggaagttgttgaagctgttgcaaatgagataggtgcagatagaactggaattagatt |
188 |
Q |
| |
|
||||||| |||||||| ||| || ||| |||||||||||||||||||||| ||||||||||| ||||| | | |||||||||||| |
|
|
| T |
44191643 |
gatccctagagaaccgatgttggtttggattggaagttgttgaagctgttgtgaatgagataggagcagaaaaagttggaattagatt |
44191556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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