View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3425_low_78 (Length: 238)
Name: NF3425_low_78
Description: NF3425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3425_low_78 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 18 - 226
Target Start/End: Complemental strand, 7964442 - 7964234
Alignment:
| Q |
18 |
gcaacaagaaatgagacagatacctggattaaatatacggcaccatttacagagatgtaaattatcctgagcttatcagttggtaaactccttgcctgct |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7964442 |
gcaacaagaaatgagacagatacctggattaaatatacggcaccatttacagagatgtaaattatcctgagcttatcagttggtaaactccttgcctgct |
7964343 |
T |
|
| Q |
118 |
caatcatgaaataaaattataacctatttcctaataaaactagaaagtacttaataacaaattaaggaaccactcctctggaaatgccacattccaatag |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7964342 |
caatcatgaaataaaattataacctatttcctaataaaactagaaagtacttgataacaaattaaggaaccactcctctggaaatgccacattccaatag |
7964243 |
T |
|
| Q |
218 |
ttggttcat |
226 |
Q |
| |
|
||||||||| |
|
|
| T |
7964242 |
ttggttcat |
7964234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 26 - 124
Target Start/End: Complemental strand, 55084881 - 55084783
Alignment:
| Q |
26 |
aaatgagacagatacctggattaaatatacggcaccatttacagagatgtaaattatcctgagcttatcagttggtaaactccttgcctgctcaatcat |
124 |
Q |
| |
|
||||||| |||||||||||| | ||| | |||| |||||| || || ||||||||| ||||| ||||||||||||||||||||||||||||| |||| |
|
|
| T |
55084881 |
aaatgagttagatacctggataatatacaaggcagcatttattgaaatataaattatcttgagcatatcagttggtaaactccttgcctgctcagtcat |
55084783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University