View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3425_low_86 (Length: 235)

Name: NF3425_low_86
Description: NF3425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3425_low_86
NF3425_low_86
[»] chr7 (5 HSPs)
chr7 (1-222)||(12653814-12654035)
chr7 (1-222)||(37625732-37625954)
chr7 (9-91)||(32839037-32839124)
chr7 (27-90)||(26049596-26049663)
chr7 (7-63)||(2704256-2704312)
[»] chr1 (2 HSPs)
chr1 (1-222)||(47139374-47139599)
chr1 (1-222)||(46210542-46210767)
[»] chr5 (1 HSPs)
chr5 (1-222)||(6382964-6383189)
[»] chr8 (4 HSPs)
chr8 (1-168)||(45274832-45274998)
chr8 (1-222)||(40551485-40551711)
chr8 (12-63)||(7253049-7253100)
chr8 (15-63)||(10501023-10501071)
[»] chr3 (3 HSPs)
chr3 (35-222)||(27657210-27657397)
chr3 (1-222)||(19974783-19974991)
chr3 (12-63)||(30593808-30593859)
[»] chr2 (1 HSPs)
chr2 (26-167)||(40814354-40814487)
[»] chr4 (1 HSPs)
chr4 (12-90)||(5826788-5826870)
[»] scaffold0040 (1 HSPs)
scaffold0040 (12-63)||(68363-68414)


Alignment Details
Target: chr7 (Bit Score: 166; Significance: 6e-89; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 12653814 - 12654035
Alignment:
Q  1 tactagaaattttttgaagactatgatattatcatactctctcaacactacattctttttacattccatcattattctctctccccctccatgtttctga 100  Q
    |||| |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  12653814 tacttgaaattttttgaagaccatggtattatcatactctctcaacactacattctttttacattccatcatcattctctctccccctccatgtttctga 12653913  T
Q  101 ttacccgctcaccaccgccaccaatagcagcctttcatggttttttaaatcatcctttctctgtcaaataggctgaacttcaacatatttctctgttaac 200  Q
    |||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |  |||| |||||||| |||||||||| |||    
T  12653914 ttacccgcccaccaccgccaccaacagcagcctttcatggttttttaactcatcctttctctgtcaaacacactgatcttcaacagatttctctgtcaac 12654013  T
Q  201 tgttgacgccgatcttcttctt 222  Q
    ||||||| ||||||||||||||    
T  12654014 tgttgacaccgatcttcttctt 12654035  T

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Target: chr7; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 37625732 - 37625954
Alignment:
Q  1 tactagaaattttttgaagactatgatattatcatactctctcaacactacattctttttacattccatcattattctctctccccctccatgtttctga 100  Q
    |||| |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||    
T  37625732 tacttgaaattttttgaagaccatggtattatcatactctctcaacactacattctttttacattccatcatcattctctctccccctccatgtttttga 37625831  T
Q  101 ttacccgctcaccaccgccaccaatagcagcctttcatgg-ttttttaaatcatcctttctctgtcaaataggctgaacttcaacatatttctctgttaa 199  Q
    |||||||| ||||||||||||||| ||||||||||||||| |||||||| ||||||||||||||||||| | | ||| |||||||| |||||||||| ||    
T  37625832 ttacccgcccaccaccgccaccaacagcagcctttcatggtttttttaactcatcctttctctgtcaaacacgttgatcttcaacagatttctctgtcaa 37625931  T
Q  200 ctgttgacgccgatcttcttctt 222  Q
     ||||||| |||| |||||||||    
T  37625932 atgttgacaccgaccttcttctt 37625954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 9 - 91
Target Start/End: Complemental strand, 32839124 - 32839037
Alignment:
Q  9 attttttgaagactatgatattatcatactctctcaacactacattctttttaca-----ttccatcattattctctctccccctcca 91  Q
    ||||||||||||  ||  |||| ||||||||||||||||||||||||||||||||     ||||||||| ||||||||||||||||||    
T  32839124 attttttgaagatcatagtattgtcatactctctcaacactacattctttttacactatgttccatcatcattctctctccccctcca 32839037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 27 - 90
Target Start/End: Complemental strand, 26049663 - 26049596
Alignment:
Q  27 tattatcatactctctcaacactacattctttttaca----ttccatcattattctctctccccctcc 90  Q
    |||||||| ||||||||||||||| ||||||||||||    ||||||||| |||||||| ||||||||    
T  26049663 tattatcacactctctcaacactagattctttttacacatgttccatcatcattctctccccccctcc 26049596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 63
Target Start/End: Original strand, 2704256 - 2704312
Alignment:
Q  7 aaattttttgaagactatgatattatcatactctctcaacactacattctttttaca 63  Q
    ||||||| ||| ||| |||||||||| ||||||||||||| ||| || |||||||||    
T  2704256 aaattttctgatgaccatgatattattatactctctcaacgctagatactttttaca 2704312  T

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Target: chr1 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 47139599 - 47139374
Alignment:
Q  1 tactagaaattttttgaagactatgatattatcatactctctcaacactacattctttttacattccatcattattctctctccccctccatgtttct-- 98  Q
    |||| |||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||      
T  47139599 tacttgaaattttttgaagaccatggtattatcatactctttcaacactacattctttttacattccatcatcattctctctccccctccatgtttcttt 47139500  T
Q  99 --gattacccgctcaccaccgccaccaatagcagcctttcatggttttttaaatcatcctttctctgtcaaataggctgaacttcaacatatttctctgt 196  Q
      |||||||||| |||||  |||||||| ||||||||||||||||||||||| ||||||||||||||||||| | ||||| |||||||| ||||||||||    
T  47139499 ttgattacccgcccaccagggccaccaacagcagcctttcatggttttttaattcatcctttctctgtcaaacacgctgatcttcaacagatttctctgt 47139400  T
Q  197 taactgttgacgccgatcttcttctt 222  Q
     |||||||||| ||||||||||||||    
T  47139399 caactgttgacaccgatcttcttctt 47139374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 46210542 - 46210767
Alignment:
Q  1 tactagaaattttttgaagactatgatattatcatactctctcaacactacattctttttacattccatcattattctctctccccctccatgtttc--- 97  Q
    |||| ||||||||||||| |  ||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||       
T  46210542 tacttgaaattttttgaaaatcatggtattatcatactctctcaacactacattctttttacattccatcatcattctctctccccctccatgtttcttt 46210641  T
Q  98 -tgattacccgctcaccaccgccaccaatagcagcctttcatggttttttaaatcatcctttctctgtcaaataggctgaacttcaacatatttctctgt 196  Q
     ||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| | ||||| |||||||| |||||||| |    
T  46210642 ctgattacccgcccaccaccgccaccaacagcagcctttcatggttttttaactcatcctttctctgtcaaacacgctgatcttcaacagatttctctat 46210741  T
Q  197 taactgttgacgccgatcttcttctt 222  Q
     |||||||||| ||||| ||||||||    
T  46210742 caactgttgacaccgatattcttctt 46210767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 6382964 - 6383189
Alignment:
Q  1 tactagaaattttttgaagactatgatattatcatactctctcaacactacattctttttacattccatcattattctctctccccctccatgtttc--- 97  Q
    |||| |||||||||||||||| | | |||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||       
T  6382964 tacttgaaattttttgaagaccacggtattatcatactctctcaacgctacattctttttacattcgatcatcattctctctccccctccatgtttcttt 6383063  T
Q  98 -tgattacccgctcaccaccgccaccaatagcagcctttcatggttttttaaatcatcctttctctgtcaaataggctgaacttcaacatatttctctgt 196  Q
     |||||||| || ||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||| | ||||| |||||||| ||||||||||    
T  6383064 ctgattacctgcccaccaccgccaccaacagcagcctttcatggttttttaactcatcatttctctgtcaaacacgctgatcttcaacagatttctctgt 6383163  T
Q  197 taactgttgacgccgatcttcttctt 222  Q
     |||||||||| |||||| |||||||    
T  6383164 caactgttgacaccgatcctcttctt 6383189  T

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Target: chr8 (Bit Score: 128; Significance: 3e-66; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 45274998 - 45274832
Alignment:
Q  1 tactagaaattttttgaagactatgatattatcatactctctcaacactacattctttttacattccatcattattctctctccccctccatgtttctga 100  Q
    |||| |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||    
T  45274998 tacttgaaattttttgaagaccatggtattatcatactctctcaacactacattctttttacattccatcatcattctctc-ccccctccatgtttctga 45274900  T
Q  101 ttacccgctcaccaccgccaccaatagcagcctttcatggttttttaaatcatcctttctctgtcaaa 168  Q
    |||||||| ||||||| ||||||| ||||||||||||||||||||||| |||||||||||||||||||    
T  45274899 ttacccgcccaccaccaccaccaacagcagcctttcatggttttttaactcatcctttctctgtcaaa 45274832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 40551711 - 40551485
Alignment:
Q  1 tactagaaattttttgaagactatgatattatcatactctctcaacactacattcttttt-acattccatcattattctctctccccctccatgtttct- 98  Q
    |||| |||||||||||||||| | | |||||||||||||| ||||| ||||||||||||| ||||| |||||| |||||||||||||||||||||||||     
T  40551711 tacttgaaattttttgaagaccacggtattatcatactctttcaacgctacattcttttttacatttcatcatcattctctctccccctccatgtttctt 40551612  T
Q  99 ---gattacccgctcaccaccgccaccaatagcagcctttcatggttttttaaatcatcctttctctgtcaaataggctgaacttcaacatatttctctg 195  Q
       ||| |||||| ||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||| | ||||| |||||||| |||||||||    
T  40551611 tttgatcacccgcccaccaccgccaccaacaacagcctttcatggttttttaactcatcctttctctgtcaaacacgctgatcttcaacagatttctctg 40551512  T
Q  196 ttaactgttgacgccgatcttcttctt 222  Q
    | |||||||||| ||||||||||||||    
T  40551511 tcaactgttgacaccgatcttcttctt 40551485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 63
Target Start/End: Complemental strand, 7253100 - 7253049
Alignment:
Q  12 ttttgaagactatgatattatcatactctctcaacactacattctttttaca 63  Q
    |||||| ||| |||||||||| ||||||||||||||||| || |||||||||    
T  7253100 ttttgatgaccatgatattattatactctctcaacactagatactttttaca 7253049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 63
Target Start/End: Original strand, 10501023 - 10501071
Alignment:
Q  15 tgaagactatgatattatcatactctctcaacactacattctttttaca 63  Q
    ||||||| ||||||||| |||||||||||||||||| |||  |||||||    
T  10501023 tgaagaccatgatattaccatactctctcaacactatatttattttaca 10501071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 116; Significance: 4e-59; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 35 - 222
Target Start/End: Original strand, 27657210 - 27657397
Alignment:
Q  35 tactctctcaacactacattctttttacattccatcattattctctctccccctccatgtttctgattacccgctcaccaccgccaccaatagcagcctt 134  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |||| ||||||||||||||| | || ||||    
T  27657210 tactctctcaacactacattctttttacattccatcatcattctctctctccctccatgtttctgattatccgcccaccaccgccaccaacaacaacctt 27657309  T
Q  135 tcatggttttttaaatcatcctttctctgtcaaataggctgaacttcaacatatttctctgttaactgttgacgccgatcttcttctt 222  Q
    ||||| |||||||| ||||||||||||||||||| | ||| | |||||||| |||||||| | || ||||||| ||||||||||||||    
T  27657310 tcatgattttttaactcatcctttctctgtcaaacacgctaatcttcaacagatttctctatcaattgttgacaccgatcttcttctt 27657397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 19974783 - 19974991
Alignment:
Q  1 tactagaaattttttgaagactatgatattatcatactctctcaacactacattctttttacattccatcattattctctctccccctccatgtttctga 100  Q
    |||| |||||||||||||||| ||| |||||||||||||||||||||||||||||            ||||| |||||||||||| ||||||||||||||    
T  19974783 tacttgaaattttttgaagaccatg-tattatcatactctctcaacactacattc------------atcatcattctctctccctctccatgtttctga 19974869  T
Q  101 ttacccgctcaccaccgccaccaatagcagcctttcatggttttttaaatcatcctttctctgtcaaataggctgaacttcaacatatttctctgttaac 200  Q
    |||||||| ||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||| | ||||| |||||||| |||||||||  |||    
T  19974870 ttacccgcccaccaccgccaccaacagcagcctttcatggtttttgaactcatcctttctctgtcaaacatgctgatcttcaacagatttctctgccaac 19974969  T
Q  201 tgttgacgccgatcttcttctt 222  Q
     |||||| ||||||||||||||    
T  19974970 agttgacaccgatcttcttctt 19974991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 63
Target Start/End: Original strand, 30593808 - 30593859
Alignment:
Q  12 ttttgaagactatgatattatcatactctctcaacactacattctttttaca 63  Q
    ||||||||||||| ||||||||||||||||| |||| || ||| ||||||||    
T  30593808 ttttgaagactataatattatcatactctctaaacattagattatttttaca 30593859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 26 - 167
Target Start/End: Complemental strand, 40814487 - 40814354
Alignment:
Q  26 atattatcatactctctcaacactacattctttttacattccatcattattctctctccccctccatgt----ttctgattacccgctcaccaccgccac 121  Q
    ||||||||||||||||||||| ||||||||||||||| ||||||||| |||||||||| ||||||||||    |||||||||||||| |||||||||||     
T  40814487 atattatcatactctctcaacgctacattctttttactttccatcatcattctctctctccctccatgtttctttctgattacccgcccaccaccgcca- 40814389  T
Q  122 caatagcagcctttcatggttttttaaatcatcctttctctgtcaa 167  Q
               |||||||||||||||| ||||||||||||||||||    
T  40814388 -----------tttcatggttttttaactcatcctttctctgtcaa 40814354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 90
Target Start/End: Original strand, 5826788 - 5826870
Alignment:
Q  12 ttttgaagactatgatattatcatactctctcaacactacattctttttaca----ttccatcattattctctctccccctcc 90  Q
    |||||||||| ||  |||||||| ||||| ||||||||| ||||||||||||    ||||||||| |||||||||||||||||    
T  5826788 ttttgaagaccatagtattatcacactctatcaacactagattctttttacacatgttccatcatcattctctctccccctcc 5826870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 63
Target Start/End: Original strand, 68363 - 68414
Alignment:
Q  12 ttttgaagactatgatattatcatactctctcaacactacattctttttaca 63  Q
    |||||||||  |||||||||| ||||||||||||||||| || |||||||||    
T  68363 ttttgaagatcatgatattattatactctctcaacactagatactttttaca 68414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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