View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3425_low_88 (Length: 225)
Name: NF3425_low_88
Description: NF3425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3425_low_88 |
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| [»] chr3 (5 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-122; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 23301410 - 23301186
Alignment:
| Q |
1 |
accatcttttatagtacaaattcataactacaaagtttttgaacttataaagtggaaagaaattcaaattattgggttccaacacaataaccaaatgata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23301410 |
accatcttttatagtacaaattcataactacaaagtttttgaacttataaagtggaaagaaattcaaattattgggttccaacacaataaccaaatgata |
23301311 |
T |
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| Q |
101 |
actcgtgaaaagttcaagcatggtgtttgtgttctctcttggggtctgaaactaaatacataatcatatgggcacaaaatctattgcttaagtgattcta |
200 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23301310 |
actcgtgaaaagttcaagcatggtgtttctgttctctcttggggtctgaaactaaatacataatcatatgggcacaaaatctattgcttaagtgattcta |
23301211 |
T |
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| Q |
201 |
acacatttacattggttatatacac |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
23301210 |
acacatttacattggttatatacac |
23301186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 24199023 - 24198818
Alignment:
| Q |
1 |
accatcttttatagtacaaattcataactacaaagtttttgaacttataaagtggaaagaaattcaaattattgggttccaacacaataaccaaatgata |
100 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| ||||| | | |
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| T |
24199023 |
accatctcttatagtacaaattcataactacaaagtttttgaacttataaag-ggaaagaaattcaaattattaggttccaacacaataatcaaatcaca |
24198925 |
T |
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| Q |
101 |
actcgtgaaaagttcaagcatggtgtttgtgttctctcttggggtctgaaactaaatacataatcatatgggcacaaaatctattgcttaagtgattcta |
200 |
Q |
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| T |
24198924 |
actcgtgaaaagtttgagcatggcgtttgtgtattctcctggggtctgaaactaaatacat----atatggggacaaaatctattatttaagtgattcta |
24198829 |
T |
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| Q |
201 |
acacatttaca |
211 |
Q |
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||||||||||| |
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| T |
24198828 |
acacatttaca |
24198818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 16912838 - 16912633
Alignment:
| Q |
1 |
accatcttttatagtacaaattcataactacaaagtttttgaacttataaagtggaaagaaattcaaattattgggttccaacacaataaccaaatgata |
100 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| ||||| | | |
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| T |
16912838 |
accatctcttatagtacaaattcataactacaaagtttttgaacttataaag-ggaaagaaattcaaattattaggttccaacacaataatcaaatcaca |
16912740 |
T |
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| Q |
101 |
actcgtgaaaagttcaagcatggtgtttgtgttctctcttggggtctgaaactaaatacataatcatatgggcacaaaatctattgcttaagtgattcta |
200 |
Q |
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|||||||||||||| ||||||| |||||||| |||| ||| |||||||||||||||||| ||||||| |||||||||||| ||||||||||||| |
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| T |
16912739 |
actcgtgaaaagtttgagcatggcgtttgtgtattctcctggcgtctgaaactaaatacat----atatggggacaaaatctattatttaagtgattcta |
16912644 |
T |
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| Q |
201 |
acacatttaca |
211 |
Q |
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||||||||||| |
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| T |
16912643 |
acacatttaca |
16912633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 45 - 222
Target Start/End: Complemental strand, 23321362 - 23321195
Alignment:
| Q |
45 |
ttataaagtggaaagaaattcaaattattgggttccaacacaataaccaaatgataactcgtgaaaagttcaagcatggtgtttgtgttctctcttgggg |
144 |
Q |
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|||||||| ||||||||||||||||||||| ||||||| ||||||||||||||| || | || ||||||| |||||| |||||||| | |
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| T |
23321362 |
ttataaagaggaaagaaattcaaattattgagttccaatacaataaccaaatgacaattagttaaaagtttgagcatg----------actctcttgaag |
23321273 |
T |
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| Q |
145 |
tctgaaactaaatacataatcatatgggcacaaaatctattgcttaagtgattctaacacatttacattggttatata |
222 |
Q |
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|||| |||||||||| |||||| || ||||| |||||| | || ||| |||||||||||||||||||||||||||| |
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| T |
23321272 |
tctggcactaaatacaaaatcatttgagcacataatctactagttgagtaattctaacacatttacattggttatata |
23321195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 108
Target Start/End: Complemental strand, 38749937 - 38749891
Alignment:
| Q |
62 |
attcaaattattgggttccaacacaataaccaaatgataactcgtga |
108 |
Q |
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||||||||||||| || |||||||||||| |||||||||||||||| |
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| T |
38749937 |
attcaaattattgagtgtcaacacaataactaaatgataactcgtga |
38749891 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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