View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3425_low_92 (Length: 207)

Name: NF3425_low_92
Description: NF3425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3425_low_92
NF3425_low_92
[»] chr1 (1 HSPs)
chr1 (20-125)||(49383602-49383707)
[»] chr4 (3 HSPs)
chr4 (19-125)||(24685869-24685975)
chr4 (19-82)||(24126983-24127046)
chr4 (79-125)||(24126901-24126947)
[»] chr2 (2 HSPs)
chr2 (19-82)||(25649193-25649256)
chr2 (79-125)||(25649291-25649337)
[»] chr6 (2 HSPs)
chr6 (19-82)||(9306215-9306278)
chr6 (79-125)||(9306313-9306359)
[»] scaffold0471 (2 HSPs)
scaffold0471 (19-82)||(11586-11650)
scaffold0471 (79-125)||(11504-11550)


Alignment Details
Target: chr1 (Bit Score: 102; Significance: 7e-51; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 102; E-Value: 7e-51
Query Start/End: Original strand, 20 - 125
Target Start/End: Original strand, 49383602 - 49383707
Alignment:
Q  20 aatcaatcataaacaatacaaatggaatcaaatcaaacaacaaatttaggttagaattgggaagagaagagaatgatgaagaaaatagaagagttagaac 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  49383602 aatcaatcataaacaatacaaatggaatcaaatcaaacaacaaatttaggttagaattgggaagagaagagaatgatgaagaaaagagaagagttagaac 49383701  T
Q  120 ttcaaa 125  Q
    ||||||    
T  49383702 ttcaaa 49383707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 99; Significance: 5e-49; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 19 - 125
Target Start/End: Complemental strand, 24685975 - 24685869
Alignment:
Q  19 gaatcaatcataaacaatacaaatggaatcaaatcaaacaacaaatttaggttagaattgggaagagaagagaatgatgaagaaaatagaagagttagaa 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  24685975 gaatcaatcataaacaatacaaatggaatcaaatcaaacaacaaatttaggttagaattgggaagagaagagaatgatgaagaaacgagaagagttagaa 24685876  T
Q  119 cttcaaa 125  Q
    |||||||    
T  24685875 cttcaaa 24685869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 24127046 - 24126983
Alignment:
Q  19 gaatcaatcataaacaatacaaatggaatcaaatcaaacaacaaatttaggttagaattgggaa 82  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  24127046 gaatcaatcataaacaataaaaatggaatcaaatcaaacaacaaatttaggttagaattgggaa 24126983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 79 - 125
Target Start/End: Complemental strand, 24126947 - 24126901
Alignment:
Q  79 ggaagagaagagaatgatgaagaaaatagaagagttagaacttcaaa 125  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||    
T  24126947 ggaagagaagagaatgatgaagaaaagagaagagttagaacttcaaa 24126901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 9e-26; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 25649193 - 25649256
Alignment:
Q  19 gaatcaatcataaacaatacaaatggaatcaaatcaaacaacaaatttaggttagaattgggaa 82  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  25649193 gaatcaatcataaacaataaaaatggaatcaaatcaaacaacaaatttaggttagaattgggaa 25649256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 79 - 125
Target Start/End: Original strand, 25649291 - 25649337
Alignment:
Q  79 ggaagagaagagaatgatgaagaaaatagaagagttagaacttcaaa 125  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||    
T  25649291 ggaagagaagagaatgatgaagaaaagagaagagttagaacttcaaa 25649337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 9306215 - 9306278
Alignment:
Q  19 gaatcaatcataaacaatacaaatggaatcaaatcaaacaacaaatttaggttagaattgggaa 82  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||    
T  9306215 gaatcaatcataaacaataaaaatggaatcaaatcaaacaacaaatttaggttaaaattgggaa 9306278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 79 - 125
Target Start/End: Original strand, 9306313 - 9306359
Alignment:
Q  79 ggaagagaagagaatgatgaagaaaatagaagagttagaacttcaaa 125  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||    
T  9306313 ggaagagaagagaatgatgaagaaaagagaagagttagaacttcaaa 9306359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0471 (Bit Score: 53; Significance: 1e-21; HSPs: 2)
Name: scaffold0471
Description:

Target: scaffold0471; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 11650 - 11586
Alignment:
Q  19 gaatcaatcataaacaatacaaa-tggaatcaaatcaaacaacaaatttaggttagaattgggaa 82  Q
    ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||    
T  11650 gaatcaatcataaacaataaaaaatggaatcaaatcaaacaacaaatttaggttagaattgggaa 11586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0471; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 79 - 125
Target Start/End: Complemental strand, 11550 - 11504
Alignment:
Q  79 ggaagagaagagaatgatgaagaaaatagaagagttagaacttcaaa 125  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||    
T  11550 ggaagagaagagaatgatgaagaaaagagaagagttagaacttcaaa 11504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University