View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3426_high_1 (Length: 353)
Name: NF3426_high_1
Description: NF3426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3426_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 313; Significance: 1e-176; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 11 - 335
Target Start/End: Original strand, 29331617 - 29331941
Alignment:
| Q |
11 |
catcatcactaacttgaaatgcacgaaatgggtaaaaatagtaatgaaaatcattgtctgacattgtatacactcagaaccttgtagtttttgcataatg |
110 |
Q |
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| T |
29331617 |
catcatcactaacttgaaatgcacggaatgggtaaaaatagtaatgaaaatcattgtctgacattgtatacactcagaaccttgtagtttttgcataatg |
29331716 |
T |
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| Q |
111 |
gtcaacttcacagttcacacacaggaacatatggtgcaggcattgattaataaataacgttctaatggcacaattataagtaaccaacaaagacttacac |
210 |
Q |
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| T |
29331717 |
gtcaacttcacagttcacacacaggaacatatggtgcaggcattgattaataaataatgttctaatggcacaattataagtaaccaacaaagacttacac |
29331816 |
T |
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| Q |
211 |
actgagtataatccattagacttttatttgttaaatactattgattgatcagagaaagtttatatgggttgaaactattcaaactcggccgtgtcattaa |
310 |
Q |
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| T |
29331817 |
actgagtataatccattagacttttatttgttaaatactattgattgatcagagaaagtttatatgggttgaaactattcaaactcggcagtgtcattaa |
29331916 |
T |
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| Q |
311 |
aatttaggcctgtgtaagagaaacc |
335 |
Q |
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| T |
29331917 |
aatttaggcctgtgtaagagaaacc |
29331941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 216 - 334
Target Start/End: Original strand, 29303480 - 29303598
Alignment:
| Q |
216 |
gtataatccattagacttttatttgttaaatactattgattgatcagagaaagtttatatgggttgaaactattcaaactcggccgtgtcattaaaattt |
315 |
Q |
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| T |
29303480 |
gtataatccgttagattttaatttgttaaatattactgattgataagtgaaagtccacatagaatgaaattatttaaactcgggggtgtcattaaaattt |
29303579 |
T |
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| Q |
316 |
aggcctgtgtaagagaaac |
334 |
Q |
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|||| |||||||||||||| |
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| T |
29303580 |
aggcttgtgtaagagaaac |
29303598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 218 - 269
Target Start/End: Original strand, 29320825 - 29320876
Alignment:
| Q |
218 |
ataatccattagacttttatttgttaaatactattgattgatcagagaaagt |
269 |
Q |
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| T |
29320825 |
ataatccattagattttaatttgttaaatattattgattgataagtgaaagt |
29320876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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