View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3426_high_5 (Length: 236)
Name: NF3426_high_5
Description: NF3426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3426_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 4765940 - 4766161
Alignment:
| Q |
1 |
ttctagaatcatcggtaaaagtaggaaactttggaatgacttcaattataatgtgtagttgtacttgtacacagcaatatatagcagagagaaataacga |
100 |
Q |
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| T |
4765940 |
ttctagaatcatcggtaaaaataggaaactttggaatgacttcaattataatgtgtagttgtacttgtacacagcaatatatagcagagagaaataacga |
4766039 |
T |
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| Q |
101 |
tgagtccttatgtgataagagctatgcctgctataattaaattatcagctagaacttgattagcagcttctgaaggatgaacactatcccaaaacacata |
200 |
Q |
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| T |
4766040 |
cgagtccttatgtgataagagctatgcctgctataattaaattatcagctagaacttgattagcagcttctgaaggatgaacactatcccaaaacacata |
4766139 |
T |
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| Q |
201 |
ctgagttgcattagaacaagtt |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
4766140 |
ctgagttgcattagaacaagtt |
4766161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 151 - 222
Target Start/End: Complemental strand, 43252392 - 43252321
Alignment:
| Q |
151 |
agaacttgattagcagcttctgaaggatgaacactatcccaaaacacatactgagttgcattagaacaagtt |
222 |
Q |
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|||| ||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |
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| T |
43252392 |
agaatttggttagcagcttctgaaggatggacactgtcccaaaacacatactgagttgcattagaacaagtt |
43252321 |
T |
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