View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3426_low_3 (Length: 319)
Name: NF3426_low_3
Description: NF3426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3426_low_3 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 146 - 319
Target Start/End: Complemental strand, 17916839 - 17916666
Alignment:
| Q |
146 |
tttttatccaccccattgaaaagtgcattcaatgctttggagttagctagagacaactcatcttcacttgtggtccattcctcttcagatttcaccacat |
245 |
Q |
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| T |
17916839 |
tttttatccaccccattgaaaagtgcattcaatgctttggagttagctagagacaactcctcttcaattgtggtccattcctcttcagatttcaccacat |
17916740 |
T |
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| Q |
246 |
cagttttgttccttacatttatatttctatggttgtggtccatcccatctttatcatatatgtaattgactaat |
319 |
Q |
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| T |
17916739 |
cagttttgtttcttacatttatatttctattgttgtggttcatcccatctttatcatatatgtaattgactaat |
17916666 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 10 - 143
Target Start/End: Complemental strand, 17917034 - 17916911
Alignment:
| Q |
10 |
aagaatatcaaaagtatttgtaatgtcaaacacagtcatataatagtcttgtatagtttcatgttcattcatctttaaactttcgaattttgtagtcaaa |
109 |
Q |
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| T |
17917034 |
aagaaaatcaaaagtatttgtaatgtcaagcacattcatataatagtcttgtatagtttcat----------ctttaaactttcgaattttgtagtcaaa |
17916945 |
T |
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| Q |
110 |
agttgaatccttgagtttttcaccttggatgtgc |
143 |
Q |
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| T |
17916944 |
agttgaatccttgagcttttcaccttggatgtgc |
17916911 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 92; Significance: 1e-44; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 16 - 139
Target Start/End: Complemental strand, 48798475 - 48798352
Alignment:
| Q |
16 |
atcaaaagtatttgtaatgtcaaacacagtcatataatagtcttgtatagtttcatgttcattcatctttaaactttcgaattttgtagtcaaaagttga |
115 |
Q |
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| T |
48798475 |
atcaaaagtatttgcaatgtcaagcacattcatataatagtcttgtacagtctcatcttcattcatctttaaattttcgaattttgtagtcaaaagttga |
48798376 |
T |
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| Q |
116 |
atccttgagtttttcaccttggat |
139 |
Q |
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| T |
48798375 |
atccttgagcttttcaccttggat |
48798352 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 146 - 256
Target Start/End: Complemental strand, 48798276 - 48798166
Alignment:
| Q |
146 |
tttttatccaccccattgaaaagtgcattcaatgctttggagttagctagagacaactcatcttcacttgtggtccattcctcttcagatttcaccacat |
245 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |||| | ||||| |
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| T |
48798276 |
tttttatccaccccattgaaaagtgcattcaatgctttggaattagctagagacaactcatcttcagatgtggtccattcctcttcatattttagcacat |
48798177 |
T |
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| Q |
246 |
cagttttgttc |
256 |
Q |
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| T |
48798176 |
cagttttgttc |
48798166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 194 - 256
Target Start/End: Complemental strand, 19895412 - 19895350
Alignment:
| Q |
194 |
agagacaactcatcttcacttgtggtccattcctcttcagatttcaccacatcagttttgttc |
256 |
Q |
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| T |
19895412 |
agagacaactcatcttcagctgtggtccattcctcttcagatttcagcacatcagttttgttc |
19895350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 189
Target Start/End: Complemental strand, 14516968 - 14516928
Alignment:
| Q |
149 |
ttatccaccccattgaaaagtgcattcaatgctttggagtt |
189 |
Q |
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| T |
14516968 |
ttatctaccccattgaatagagcattcaatgctttggagtt |
14516928 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 231
Target Start/End: Complemental strand, 17852023 - 17851938
Alignment:
| Q |
146 |
tttttatccaccccattgaaaagtgcattcaatgctttggagttagctagagacaactcatcttcacttgtggtccattcctcttc |
231 |
Q |
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| T |
17852023 |
tttttgtctaccccattgagcaatgcattcaatgcttgggaattaccaagagccaattcatcttcagtagtggtccattcttcttc |
17851938 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 189
Target Start/End: Complemental strand, 20841901 - 20841861
Alignment:
| Q |
149 |
ttatccaccccattgaaaagtgcattcaatgctttggagtt |
189 |
Q |
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| T |
20841901 |
ttatctaccccattgaatagagcattcaatgctttggagtt |
20841861 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 231
Target Start/End: Original strand, 21529884 - 21529960
Alignment:
| Q |
155 |
accccattgaaaagtgcattcaatgctttggagttagctagagacaactcatcttcacttgtggtccattcctcttc |
231 |
Q |
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| T |
21529884 |
accccattgaaaaatgcattcagtgctttggaattaccaagagtcagttcatcttcagcagtggtccattcttcttc |
21529960 |
T |
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