View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3426_low_5 (Length: 240)
Name: NF3426_low_5
Description: NF3426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3426_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 159; Significance: 8e-85; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 44 - 222
Target Start/End: Original strand, 6073286 - 6073464
Alignment:
| Q |
44 |
atattcttaaaggacttttgtgtactctcttggttcttgcacaacatacaaaatcaattgggattaggtttttatttgaactacggtctaacacatttac |
143 |
Q |
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| T |
6073286 |
atattcttaaaggacttttgtgtactctcttggttcttgcacaacatacaaaatcacttgggattaggtttttatttgaactacggtctaacacatttat |
6073385 |
T |
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| Q |
144 |
aaataccgctgacacatttcacgaccaaataagatggacacatattttttgcacaatcatcatctctgaaacattttct |
222 |
Q |
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| T |
6073386 |
aaataccgttgacacacttcacgaccaaataagacggacacatattttttgcacaatcatcatctctgaaacattttct |
6073464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 59 - 222
Target Start/End: Original strand, 6080354 - 6080517
Alignment:
| Q |
59 |
ttttgtgtactctcttggttcttgcacaacatacaaaatcaattgggattaggtttttatttgaactacggtctaacacatttacaaataccgctgacac |
158 |
Q |
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| T |
6080354 |
ttttgtgcactctcttgactctttcactaaatacaaaatcaattgggattaagtcttacttgcaaccctggtctaacacacttacaattacttctgagac |
6080453 |
T |
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| Q |
159 |
atttcacgaccaaataagatggacacatattttttgcacaatcatcatctctgaaacattttct |
222 |
Q |
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| T |
6080454 |
acttcacgaccaaataggatggacacatattttttggacaatcagaatctctaaaacatcttct |
6080517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 57 - 222
Target Start/End: Complemental strand, 6068986 - 6068821
Alignment:
| Q |
57 |
acttttgtgtactctcttggttcttgcacaacatacaaaatcaattgggattaggtttttatttgaactacggtctaacacatttacaaataccgctgac |
156 |
Q |
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| T |
6068986 |
acttttgtttactctcttggttctttcactaaatacaaaatcatttgggattaagttctacttgcaactccggtctaccacacctacaaagtcttccgat |
6068887 |
T |
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| Q |
157 |
acatttcacgaccaaataagatggacacatattttttgcacaatcatcatctctgaaacattttct |
222 |
Q |
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| T |
6068886 |
acacttcacggccaaataagatgggcacataaattttggacaatcagaatctctaaaacattttct |
6068821 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 41 - 109
Target Start/End: Complemental strand, 6113348 - 6113281
Alignment:
| Q |
41 |
gtaatattcttaaaggacttttgtgtactctcttggttcttgcacaacatacaaaatcaattgggatta |
109 |
Q |
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| T |
6113348 |
gtaatattctaaaag-acttttgtgtattctcttggttctttcactaaatacaaaatcacttgggatta |
6113281 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 39 - 109
Target Start/End: Complemental strand, 6120242 - 6120173
Alignment:
| Q |
39 |
atgtaatattcttaaaggacttttgtgtactctcttggttcttgcacaacatacaaaatcaattgggatta |
109 |
Q |
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| T |
6120242 |
atgtaatattctaaaag-acttttgtgtactctcctggttctttcagtaaatacaaaatcacttgggatta |
6120173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 109
Target Start/End: Original strand, 6091406 - 6091475
Alignment:
| Q |
39 |
atgtaatattcttaaaggacttttgtgtactctcttggttcttgcacaacatacaaaatcaattgggatta |
109 |
Q |
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| T |
6091406 |
atgtaatattctaaaag-acttttgtgtcctgtcttggttctttcactaaatacaaaatcactagggatta |
6091475 |
T |
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