View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3427_high_3 (Length: 446)
Name: NF3427_high_3
Description: NF3427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3427_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 1 - 430
Target Start/End: Complemental strand, 29135111 - 29134682
Alignment:
| Q |
1 |
gtttgaccaatgatagttgaaagcgggaacaaaggcgtgaaactaggtgtggttgtttggctaaatttcgtgttcacatcgacttaagatcagggaggtg |
100 |
Q |
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| T |
29135111 |
gtttgaccaatgatagttgaaagcgggaacaaaggcgtgaaagtaggtgtggttgtctggctaaatttcgtgttcgcatcgacttaagatcagggagttg |
29135012 |
T |
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| Q |
101 |
gtatgtgacccttttcagcgacgagcataatcacatattgttggaagagaagtattgtttgttgttactaggacacagaaaaatcagtgaagaagatatc |
200 |
Q |
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| T |
29135011 |
gtatgtgacccttttcagcgacgagcataatcacatattgttggaagagaagtattgtttgttgttactaggacacagaaaaatcagagaagaagatatc |
29134912 |
T |
|
| Q |
201 |
tcgaattaatagtttcagaaaaagtgggattaggtcttgtcaaatgtatggtgcatttgcaaacaactcaggcgggtatgaaaaggtaggtttagaagaa |
300 |
Q |
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|| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
29134911 |
tcaaattaatagtttcagaaaaagtgggattaggccttgtcaaatgtatggtgcatttgcaaacaactcaggctggtatgaaaaggtaggtttagaagaa |
29134812 |
T |
|
| Q |
301 |
atgacctatataatcaagttggtagacaaagacaccaatagtcattcgttgatgttgcattaaagtttctcaatgatttgggatctaaagaccctttgat |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
29134811 |
atgacctatataatcaagttggtagacaaagacaccaatagtcattcgttgatgttgcattaaagtttctgaatgatttgggatctaaagaccctttgat |
29134712 |
T |
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| Q |
401 |
gtttgtgaaacacacggttgatgatgaagg |
430 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
29134711 |
gtttgtgaaacacacggttgatgatgaagg |
29134682 |
T |
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