View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3427_high_4 (Length: 435)
Name: NF3427_high_4
Description: NF3427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3427_high_4 |
 | |
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| [»] scaffold0182 (1 HSPs) |
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| [»] scaffold0006 (1 HSPs) |
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Alignment Details
Target: scaffold0182 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: scaffold0182
Description:
Target: scaffold0182; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 12 - 417
Target Start/End: Complemental strand, 29293 - 28888
Alignment:
| Q |
12 |
agagagcatcaactcnnnnnnngacaaatatgtaggcaagaaaactacattgaaagaatttgttgaaaaatatgaagttgctttgcaagatagggaagaa |
111 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29293 |
agagagcatcaactctttttttgacaaatatgtaggcaagaaaactacattgaaagaatttgttgaaaaatatgaagttgctttgcaagatagggaagaa |
29194 |
T |
|
| Q |
112 |
gcagaaatgcatgctgattttaatacatggcataaacaaccagttcttaaaactccatcaccttttgagaagcaaatgtcaatgatttatacgcatgaag |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29193 |
gcagaaatgcatgctgattttaatacatggcataaacaaccagttcttaaaactccatcaccttttgagaagcaaatgtcaatgatttatacgcatgaag |
29094 |
T |
|
| Q |
212 |
tattcaaaaagttccaagttgaaattatgggattatctggatgtcatctcaagaaaaggaatgaagatagtcagctcacctcttttacaatattcgactt |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29093 |
tattcaaaaagttccaagttgaaattatgggattatctggatgtcatgtcaagaaaaggaatgaagatagtcagctcacctcttttacaatattcgactt |
28994 |
T |
|
| Q |
312 |
tggaaatagggaagaatttgttgtagagtgggatgcatcgaaaaagaaaatttcttgcatatgtcgtttgtttgagtataatgggtatctttgtagacat |
411 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28993 |
tggaaatagggaagaatttgttgtagagtgggatgcatcgaaagagaaaatttcttgcatatgtcgtttgtttgagtataatgggtatctttgtagacat |
28894 |
T |
|
| Q |
412 |
tcattg |
417 |
Q |
| |
|
|||||| |
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|
| T |
28893 |
tcattg |
28888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 11 - 417
Target Start/End: Complemental strand, 276404 - 275998
Alignment:
| Q |
11 |
cagagagcatcaactcnnnnnnngacaaatatgtaggcaagaaaactacattgaaagaatttgttgaaaaatatgaagttgctttgcaagatagggaaga |
110 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
276404 |
cagagagcatcaactctttttttgacaaatatgtaggcaagaaaactacattgaaagaatttgttgaaaaatatgaagttgctttgcaagatagggaaga |
276305 |
T |
|
| Q |
111 |
agcagaaatgcatgctgattttaatacatggcataaacaaccagttcttaaaactccatcaccttttgagaagcaaatgtcaatgatttatacgcatgaa |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
276304 |
agcagaaatgcatgctgattttaatacatggcataaacaaccagttcttaaaactccatcaccttttgagaagcaaatgtcaatgatttatacgcatgaa |
276205 |
T |
|
| Q |
211 |
gtattcaaaaagttccaagttgaaattatgggattatctggatgtcatctcaagaaaaggaatgaagatagtcagctcacctcttttacaatattcgact |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
276204 |
gtattcaaaaagttccaagttgaaattatgggattatctggatgtcatcttaagaaaaggaatgaagatagtcagctcacctcttttacaatattcgact |
276105 |
T |
|
| Q |
311 |
ttggaaatagggaagaatttgttgtagagtgggatgcatcgaaaaagaaaatttcttgcatatgtcgtttgtttgagtataatgggtatctttgtagaca |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
276104 |
ttggaaatagggaagaatttgttgtagagtgggatgcatcgaaagagaaaatttcttgcatatgttgtttgtttgagtataatgggtatctttgtagaca |
276005 |
T |
|
| Q |
411 |
ttcattg |
417 |
Q |
| |
|
||||||| |
|
|
| T |
276004 |
ttcattg |
275998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 374; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 11 - 417
Target Start/End: Complemental strand, 26397009 - 26396603
Alignment:
| Q |
11 |
cagagagcatcaactcnnnnnnngacaaatatgtaggcaagaaaactacattgaaagaatttgttgaaaaatatgaagttgctttgcaagatagggaaga |
110 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26397009 |
cagagagcatcaactctttttttgacaaatatgtaggcaagaaaactacattgaaagaatttgttgaaaaatatgaagttgctttgcaagatagggaaga |
26396910 |
T |
|
| Q |
111 |
agcagaaatgcatgctgattttaatacatggcataaacaaccagttcttaaaactccatcaccttttgagaagcaaatgtcaatgatttatacgcatgaa |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26396909 |
agcagaaatgcatgctgattttaatacatggcataaacaaccagttcttaaaactccatcaccttttgagaagcaaatgtcaatgatttatacgcatgaa |
26396810 |
T |
|
| Q |
211 |
gtattcaaaaagttccaagttgaaattatgggattatctggatgtcatctcaagaaaaggaatgaagatagtcagctcacctcttttacaatattcgact |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26396809 |
gtattcaaaaagttccaagttgaaattatgggattatctggatgtcatcttaagaaaaggaatgaagatagtcagctcacctcttttacaatattcgact |
26396710 |
T |
|
| Q |
311 |
ttggaaatagggaagaatttgttgtagagtgggatgcatcgaaaaagaaaatttcttgcatatgtcgtttgtttgagtataatgggtatctttgtagaca |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
26396709 |
ttggaaatagggaagaatttgttgtagagtgggatgcatcgaaagagaaaatttcttgcatatgttgtttgtttgagtataatgggtatctttgtagaca |
26396610 |
T |
|
| Q |
411 |
ttcattg |
417 |
Q |
| |
|
||||||| |
|
|
| T |
26396609 |
ttcattg |
26396603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 103
Target Start/End: Complemental strand, 19217305 - 19217236
Alignment:
| Q |
34 |
gacaaatatgtaggcaagaaaactacattgaaagaatttgttgaaaaatatgaagttgctttgcaagata |
103 |
Q |
| |
|
|||||||||||||| |||||||||||||| || || ||| |||||||||| |||| | |||||||||| |
|
|
| T |
19217305 |
gacaaatatgtaggtaagaaaactacattaaaggagtttaatgaaaaatatatagtttccttgcaagata |
19217236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 322 - 350
Target Start/End: Complemental strand, 19217023 - 19216995
Alignment:
| Q |
322 |
gaagaatttgttgtagagtgggatgcatc |
350 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
19217023 |
gaagaatttgttgtagagtgggatgcatc |
19216995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 108; Significance: 4e-54; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 34 - 417
Target Start/End: Original strand, 56109053 - 56109436
Alignment:
| Q |
34 |
gacaaatatgtaggcaagaaaactacattgaaagaatttgttgaaaaatatgaagttgctttgcaagatagggaagaagcagaaatgcatgctgatttta |
133 |
Q |
| |
|
|||||||||||| | |||||||||||||| || |||||||| ||||||||| |||||||||| || ||||| ||||| || |||| ||| |||||||||| |
|
|
| T |
56109053 |
gacaaatatgtatgtaagaaaactacattaaaggaatttgtcgaaaaatataaagttgctttacatgatagagaagaggcggaaaagcaagctgatttta |
56109152 |
T |
|
| Q |
134 |
atacatggcataaacaaccagttcttaaaactccatcaccttttgagaagcaaatgtcaatgatttatacgcatgaagtattcaaaaagttccaagttga |
233 |
Q |
| |
|
| |||||||| || ||||| ||||||| ||||||||||||||||||||||||||||| ||||| ||||| |||||| | ||||| || || |||||||| |
|
|
| T |
56109153 |
agacatggcacaagcaacctgttcttaggactccatcaccttttgagaagcaaatgtcgatgatatatacacatgaaatcttcaagaaatttcaagttga |
56109252 |
T |
|
| Q |
234 |
aattatgggattatctggatgtcatctcaagaaaaggaatgaagatagtcagctcacctcttttacaatattcgactttggaaatagggaagaatttgtt |
333 |
Q |
| |
|
| || |||||||||||||||| | | | |||| | || | |||| || || |||||||||| ||||||||| || | || || ||| || |
|
|
| T |
56109253 |
agttttgggattatctggatgccgtattgtgaaagagcataatgataatcttactgccacttttacaattttcgactttcataaaaatgacgagtttatt |
56109352 |
T |
|
| Q |
334 |
gtagagtgggatgcatcgaaaaagaaaatttcttgcatatgtcgtttgtttgagtataatgggtatctttgtagacattcattg |
417 |
Q |
| |
|
|||||||| |||| ||||| ||| |||| || || ||||||| || |||||||||||||||||||||||||||||||||||| |
|
|
| T |
56109353 |
gtagagtgtgatgtctcgaagaaggaaatatcgtgtctatgtcgcttttttgagtataatgggtatctttgtagacattcattg |
56109436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 84; Significance: 9e-40; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 34 - 417
Target Start/End: Original strand, 26014820 - 26015202
Alignment:
| Q |
34 |
gacaaatatgtaggcaagaaaactacattgaaagaatttgttgaaaaatatgaagttgctttgcaagatagggaagaagcagaaatgcatgctgatttta |
133 |
Q |
| |
|
|||||||||||| | |||||||| ||||| || |||||||| ||||||||| |||||||||| || ||||| ||||| || |||| ||| |||||||||| |
|
|
| T |
26014820 |
gacaaatatgtatgtaagaaaacaacattaaaggaatttgtcgaaaaatataaagttgctttacatgatagagaagaggcggaaaagcaagctgatttta |
26014919 |
T |
|
| Q |
134 |
atacatggcataaacaaccagttcttaaaactccatcaccttttgagaagcaaatgtcaatgatttatacgcatgaagtattcaaaaagttccaagttga |
233 |
Q |
| |
|
| |||||||| || |||| ||||||| ||||||||||||||||||||||||||||| | ||| ||||| ||| || | |||| || || |||||||| |
|
|
| T |
26014920 |
agacatggcacaagcaacgtgttcttaggactccatcaccttttgagaagcaaatgtcgaggatatatacacat-aaatcgtcaagaaatttcaagttga |
26015018 |
T |
|
| Q |
234 |
aattatgggattatctggatgtcatctcaagaaaaggaatgaagatagtcagctcacctcttttacaatattcgactttggaaatagggaagaatttgtt |
333 |
Q |
| |
|
| || |||||||||||||||||| | | |||| | || | |||| || || |||||||||| ||||||||| || | || || ||| || |
|
|
| T |
26015019 |
agttttgggattatctggatgtcgtattgtgaaagagcataatgataatcttactgccacttttacaattttcgactttcataaaaatgacgagtttatt |
26015118 |
T |
|
| Q |
334 |
gtagagtgggatgcatcgaaaaagaaaatttcttgcatatgtcgtttgtttgagtataatgggtatctttgtagacattcattg |
417 |
Q |
| |
|
||||||| |||| ||||| ||| |||| || || ||||||| || |||||||||||||||||||||||||||||||||||| |
|
|
| T |
26015119 |
ctagagtgtgatgtctcgaagaaggaaatatcgtgtctatgtcgcttttttgagtataatgggtatctttgtagacattcattg |
26015202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 34 - 95
Target Start/End: Original strand, 6967486 - 6967547
Alignment:
| Q |
34 |
gacaaatatgtaggcaagaaaactacattgaaagaatttgttgaaaaatatgaagttgcttt |
95 |
Q |
| |
|
|||||||||||| | |||||||||||||| || |||||||| ||||||||| |||||||||| |
|
|
| T |
6967486 |
gacaaatatgtatgtaagaaaactacattaaaggaatttgtcgaaaaatataaagttgcttt |
6967547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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