View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3427_high_5 (Length: 396)
Name: NF3427_high_5
Description: NF3427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3427_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 16 - 391
Target Start/End: Complemental strand, 33169225 - 33168853
Alignment:
| Q |
16 |
atccgacaccccttgtccctatccatgttacccaccacccacaggaagtggaaccgtcactcctacaaatccaactccttcagtttcaacagctccacca |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33169225 |
atccgacaccccttgtccctatccatgttacccaccacccacaggaagtggaaccgtcactcctacaaatccaactccttcagtttcaacagctccacca |
33169126 |
T |
|
| Q |
116 |
gcaccaccacaatctggattaccatatccaccaccttctggtaataacaattacccttataatcctacaccaccttacggcaacggcggcggcgacgacg |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
33169125 |
gcaccaccacaatctggattaccatatccaccaccttctggtaataacaattacccttataaccctacaccaccttacggcaacggcggcggcgacgacg |
33169026 |
T |
|
| Q |
216 |
gcaacaataataacaacaacaacaacggtggtggtgtttatggtgctccaccaccacctgatcctattctaccatactatccatattactacagattgcc |
315 |
Q |
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|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
33169025 |
gcaacaataataacaacaa---caacggtggtggtgtttatggtgctccaccaccacctgatcctattctaccatattatccatattactacagattgcc |
33168929 |
T |
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| Q |
316 |
tcctaacaaacctgatgactcttcaacatcatcaatcattgtggagaagaaatttatagggatgattgccactact |
391 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |
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| T |
33168928 |
tcctaacaaacctgatgactcttcaacatcatcaatcactgtggagaagaaatttataaggatgattgccactact |
33168853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 142; Significance: 2e-74; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 98 - 306
Target Start/End: Complemental strand, 44006976 - 44006774
Alignment:
| Q |
98 |
gtttcaacagctccaccagcaccaccacaatctggattaccatatccaccaccttctggtaataacaattacccttataatcctacaccaccttacggca |
197 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||||| |
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| T |
44006976 |
gtttcaacagctccaccagcaccaccacaatctgaattaccatatccaccaccatcttgtaataacaattacccttataatccaacaccaccttacggca |
44006877 |
T |
|
| Q |
198 |
acggcggcggcgacgacggcaacaataataacaacaacaacaacggtggtggtgtttatggtgctccaccaccacctgatcctattctaccatactatcc |
297 |
Q |
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||||||||| |||||||||||| ||||| || ||||||||||||||||||||||||||||||||||| |||||||||||| |||| |||||||| |
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| T |
44006876 |
gcggcggcggtgacgacggcaac------aacaataataacaacggtggtggtgtttatggtgctccaccaccgcctgatcctattataccttactatcc |
44006783 |
T |
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| Q |
298 |
atattacta |
306 |
Q |
| |
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||||||||| |
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| T |
44006782 |
atattacta |
44006774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 349 - 391
Target Start/End: Complemental strand, 44006774 - 44006732
Alignment:
| Q |
349 |
aatcattgtggagaagaaatttatagggatgattgccactact |
391 |
Q |
| |
|
||||||||||||||||||||| | ||||||||||||||||||| |
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| T |
44006774 |
aatcattgtggagaagaaattgagagggatgattgccactact |
44006732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 88; Significance: 3e-42; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 126 - 306
Target Start/End: Original strand, 19802675 - 19802846
Alignment:
| Q |
126 |
aatctggattaccatatccaccaccttctggtaataacaattacccttataatcctacaccaccttacggcaacggcggcggcgacgacggcaacaataa |
225 |
Q |
| |
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|||||||||| |||||||||||||| || ||||||||||||||| |||||||||| |||||||||||||||| ||||||||| ||||| | ||||||| |
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| T |
19802675 |
aatctggatttccatatccaccaccatccggtaataacaattactcttataatccaacaccaccttacggcagcggcggcggtgacgatg---acaataa |
19802771 |
T |
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| Q |
226 |
taacaacaacaacaacggtggtggtgtttatggtgctccaccaccacctgatcctattctaccatactatccatattacta |
306 |
Q |
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| |||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||| |
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| T |
19802772 |
t------aacaacggtggtggtggtgtttatggtgctccaccaccgcctgatcctattctaccttactatccttattacta |
19802846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 349 - 391
Target Start/End: Original strand, 19802846 - 19802888
Alignment:
| Q |
349 |
aatcattgtggagaagaaatttatagggatgattgccactact |
391 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
19802846 |
aatcattgtggagaagaaattgatagggatgattgccactact |
19802888 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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