View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3427_low_1 (Length: 685)

Name: NF3427_low_1
Description: NF3427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3427_low_1
NF3427_low_1
[»] chr3 (33 HSPs)
chr3 (17-675)||(26665118-26665776)
chr3 (202-370)||(15462019-15462186)
chr3 (204-334)||(30670826-30670956)
chr3 (204-348)||(7925341-7925484)
chr3 (219-366)||(1750080-1750227)
chr3 (285-373)||(31219246-31219334)
chr3 (271-366)||(42110917-42111012)
chr3 (197-276)||(18395492-18395570)
chr3 (231-313)||(32998773-32998855)
chr3 (292-374)||(53852032-53852114)
chr3 (223-368)||(44053379-44053523)
chr3 (204-363)||(23771676-23771835)
chr3 (204-364)||(51715009-51715167)
chr3 (208-366)||(32808544-32808701)
chr3 (204-334)||(36679242-36679370)
chr3 (204-334)||(36692857-36692985)
chr3 (204-266)||(43726566-43726628)
chr3 (219-366)||(51203162-51203308)
chr3 (208-373)||(25123224-25123388)
chr3 (223-320)||(26988677-26988773)
chr3 (208-277)||(33513417-33513486)
chr3 (591-662)||(25365457-25365528)
chr3 (204-243)||(25468648-25468687)
chr3 (206-332)||(41266722-41266844)
chr3 (598-656)||(12704657-12704715)
chr3 (304-362)||(21435646-21435704)
chr3 (197-334)||(20704921-20705057)
chr3 (598-659)||(25074787-25074848)
chr3 (591-659)||(15864831-15864899)
chr3 (208-320)||(25838064-25838175)
chr3 (295-367)||(39745497-39745569)
chr3 (218-289)||(42088031-42088103)
chr3 (598-658)||(52369774-52369834)
[»] chr2 (22 HSPs)
chr2 (204-369)||(13019597-13019762)
chr2 (204-366)||(38308027-38308188)
chr2 (202-370)||(24510891-24511058)
chr2 (237-366)||(45203216-45203344)
chr2 (204-366)||(5867902-5868062)
chr2 (204-335)||(43050111-43050241)
chr2 (238-339)||(7268532-7268632)
chr2 (217-366)||(10696303-10696451)
chr2 (208-319)||(24166794-24166904)
chr2 (203-366)||(28185919-28186083)
chr2 (207-316)||(25314699-25314807)
chr2 (219-304)||(34810299-34810384)
chr2 (204-277)||(37267710-37267783)
chr2 (190-339)||(44647169-44647316)
chr2 (285-334)||(19943470-19943519)
chr2 (598-670)||(11308004-11308075)
chr2 (598-662)||(25544476-25544540)
chr2 (236-335)||(13378378-13378477)
chr2 (204-338)||(34190769-34190902)
chr2 (611-664)||(10535772-10535825)
chr2 (284-352)||(775069-775137)
chr2 (246-278)||(28245022-28245054)
[»] chr7 (18 HSPs)
chr7 (204-352)||(17115881-17116029)
chr7 (204-375)||(22713363-22713533)
chr7 (204-357)||(3255088-3255241)
chr7 (204-371)||(44453596-44453762)
chr7 (193-336)||(35356353-35356494)
chr7 (204-269)||(2391582-2391647)
chr7 (208-348)||(10381968-10382105)
chr7 (204-277)||(48392385-48392458)
chr7 (216-352)||(35424848-35424983)
chr7 (237-320)||(17298394-17298477)
chr7 (204-278)||(26971404-26971477)
chr7 (203-320)||(20953185-20953302)
chr7 (209-278)||(31459410-31459479)
chr7 (217-278)||(40256819-40256880)
chr7 (601-675)||(22683758-22683830)
chr7 (204-322)||(39560012-39560131)
chr7 (610-662)||(7133290-7133342)
chr7 (610-658)||(23930218-23930266)
[»] chr8 (22 HSPs)
chr8 (204-366)||(27157625-27157786)
chr8 (203-352)||(37507534-37507682)
chr8 (207-368)||(40506615-40506776)
chr8 (225-334)||(39555877-39555984)
chr8 (218-370)||(13818755-13818906)
chr8 (204-366)||(6029989-6030150)
chr8 (219-377)||(31078724-31078881)
chr8 (208-287)||(39039706-39039785)
chr8 (245-333)||(4656562-4656650)
chr8 (223-352)||(7685447-7685574)
chr8 (220-320)||(40899641-40899739)
chr8 (246-374)||(7632694-7632822)
chr8 (598-662)||(40063946-40064010)
chr8 (204-299)||(9748309-9748403)
chr8 (540-660)||(35431080-35431202)
chr8 (601-671)||(3658133-3658203)
chr8 (330-364)||(37507538-37507572)
chr8 (234-332)||(42183685-42183784)
chr8 (206-287)||(44173147-44173228)
chr8 (217-313)||(8757187-8757282)
chr8 (208-264)||(38327349-38327405)
chr8 (591-675)||(39820411-39820495)
[»] chr6 (29 HSPs)
chr6 (204-367)||(29389112-29389274)
chr6 (199-339)||(9929288-9929427)
chr6 (253-369)||(30525770-30525886)
chr6 (215-371)||(33240802-33240956)
chr6 (202-320)||(29263809-29263927)
chr6 (204-316)||(6978485-6978597)
chr6 (219-366)||(6355661-6355811)
chr6 (238-365)||(33192022-33192150)
chr6 (215-374)||(33450813-33450973)
chr6 (204-278)||(7591055-7591129)
chr6 (219-352)||(31596495-31596628)
chr6 (204-335)||(989485-989615)
chr6 (204-278)||(6890593-6890667)
chr6 (229-367)||(14713844-14713981)
chr6 (204-278)||(32826722-32826796)
chr6 (224-281)||(13214200-13214257)
chr6 (201-352)||(3049725-3049876)
chr6 (203-350)||(9540498-9540644)
chr6 (598-657)||(34446565-34446624)
chr6 (239-352)||(2119199-2119312)
chr6 (204-357)||(6541953-6542102)
chr6 (219-278)||(9330255-9330314)
chr6 (225-304)||(21871688-21871767)
chr6 (591-657)||(12235512-12235578)
chr6 (245-362)||(6359041-6359158)
chr6 (598-659)||(6389741-6389802)
chr6 (631-675)||(7625104-7625148)
chr6 (598-658)||(12086345-12086405)
chr6 (204-367)||(34948975-34949138)
[»] chr5 (25 HSPs)
chr5 (223-368)||(22017627-22017770)
chr5 (220-334)||(17223081-17223195)
chr5 (237-350)||(40491706-40491819)
chr5 (204-278)||(13271487-13271561)
chr5 (211-366)||(28503196-28503349)
chr5 (214-328)||(7765200-7765313)
chr5 (204-366)||(14872590-14872751)
chr5 (600-673)||(18607099-18607172)
chr5 (204-369)||(22023700-22023865)
chr5 (198-303)||(33043858-33043962)
chr5 (204-316)||(35323601-35323712)
chr5 (204-302)||(8217104-8217200)
chr5 (286-367)||(19972372-19972454)
chr5 (234-300)||(39965301-39965367)
chr5 (198-267)||(21039231-21039300)
chr5 (219-367)||(27707139-27707287)
chr5 (536-588)||(27932306-27932358)
chr5 (221-269)||(37928066-37928114)
chr5 (219-339)||(41149519-41149638)
chr5 (203-266)||(30632488-30632551)
chr5 (214-269)||(36183332-36183387)
chr5 (630-676)||(18288083-18288129)
chr5 (204-278)||(27549736-27549810)
chr5 (204-373)||(31859717-31859883)
chr5 (205-262)||(3088242-3088299)
[»] scaffold0071 (1 HSPs)
scaffold0071 (202-370)||(6-173)
[»] chr4 (21 HSPs)
chr4 (217-320)||(39791212-39791314)
chr4 (204-320)||(24083163-24083279)
chr4 (204-372)||(26988891-26989059)
chr4 (217-320)||(12311813-12311916)
chr4 (208-352)||(38303255-38303399)
chr4 (239-337)||(782356-782453)
chr4 (246-346)||(9689430-9689529)
chr4 (208-332)||(41945199-41945321)
chr4 (204-320)||(55193462-55193577)
chr4 (610-659)||(20743290-20743339)
chr4 (223-371)||(39927435-39927582)
chr4 (204-319)||(7257289-7257403)
chr4 (615-670)||(32910538-32910593)
chr4 (208-327)||(45195747-45195865)
chr4 (204-278)||(30441369-30441443)
chr4 (204-242)||(37211007-37211045)
chr4 (259-325)||(53689058-53689124)
chr4 (610-671)||(7012052-7012113)
chr4 (598-659)||(16402211-16402272)
chr4 (539-588)||(17876237-17876286)
chr4 (598-659)||(24343505-24343566)
[»] chr1 (20 HSPs)
chr1 (217-334)||(31767893-31768009)
chr1 (197-278)||(31578008-31578088)
chr1 (204-352)||(2749150-2749297)
chr1 (208-351)||(23404879-23405021)
chr1 (237-352)||(18638990-18639106)
chr1 (204-366)||(7439023-7439183)
chr1 (233-278)||(14118278-14118323)
chr1 (204-265)||(32556548-32556609)
chr1 (285-373)||(30527649-30527737)
chr1 (201-363)||(37865414-37865576)
chr1 (305-373)||(38091173-38091242)
chr1 (204-352)||(17339690-17339837)
chr1 (324-376)||(35814464-35814516)
chr1 (610-662)||(40747785-40747837)
chr1 (204-339)||(434940-435073)
chr1 (219-276)||(10308233-10308290)
chr1 (204-237)||(14874374-14874407)
chr1 (598-657)||(21145466-21145526)
chr1 (204-268)||(38091268-38091332)
chr1 (610-662)||(42004959-42005011)
[»] scaffold0110 (1 HSPs)
scaffold0110 (217-332)||(6417-6532)
[»] scaffold0239 (1 HSPs)
scaffold0239 (284-327)||(16604-16647)
[»] scaffold0085 (1 HSPs)
scaffold0085 (610-671)||(25984-26045)


Alignment Details
Target: chr3 (Bit Score: 522; Significance: 0; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 522; E-Value: 0
Query Start/End: Original strand, 17 - 675
Target Start/End: Complemental strand, 26665776 - 26665118
Alignment:
Q  17 caagtacaataaaaagatgctagtaattaaaatatttatattgtaaagataaatattttagtagtcacaatcctttgcttaatgtagactcaaatttagc 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26665776 caagtacaataaaaagatgctagtaattaaaatatttatattgtaaagataaatattttagtagtcacaatcctttgcttaatgtagactcaaatttagc 26665677  T
Q  117 acatggccaagagtttttgggcttgaaacttggaacaatgtgtagggttttaaataaggccgttgtgtagggctttaaataaggctgttactttttccat 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||  |||| |||| ||||    
T  26665676 acatggccaagagtttttgggcttgaaacttggaacaatgtgtaggattttaaataaggccgttgtgtagggctttaaataaggtcgttatttttcccat 26665577  T
Q  217 cctatgagtttctcgcgcgtcctatttggattttaaaatccgaaatatttcaatgtgtttttagaaatttttatggggtgtttatgccgttcggattcta 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||  |||||||||||||| ||||||||||||||||||||||    
T  26665576 cctatgagtttctcgcgcgtcctatttggattttaaaatccgaaatatttcaacatgttttccgaaatttttatgggttgtttatgccgttcggattcta 26665477  T
Q  317 taattcaaactgcatagggcgcgcaagaaactcatatggtgggaaaagaagcagtctttaaataaaggtatatgactgggatttggaattcaacatcagt 416  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26665476 taattcaaactgcatagggcgcgcgagaaactcatatggtgggaaaagaagcagtctttaaataaaggtatatgactgggatttggaattcaacatcagt 26665377  T
Q  417 attttgaatgactgcaacatcattctccttaattaagatttgtgacacnnnnnnnatcactgctgcgttttaaaacattgaagtatgtacctcataaaaa 516  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||       ||| |||||||||||||||||||||||||||| ||||||||||||    
T  26665376 attttgaatgactccaacatcattctccttaattaagatttgtgacacttttgttatcgctgctgcgttttaaaacattgaagtatgcacctcataaaaa 26665277  T
Q  517 cttataccaagtcatgttatgtcctatgaagtacaaacactccttgaattaggggtgttctggtgtcggaca--tttcggtgcccgacacgacgtctatg 614  Q
    |||||||||||||||||||||||||||   |||| |||||||||||||||||||||||||||||||||||||   ||||||| ||||||||||| ||||     
T  26665276 cttataccaagtcatgttatgtcctat--tgtacgaacactccttgaattaggggtgttctggtgtcggacacgcttcggtgtccgacacgacgcctata 26665179  T
Q  615 attacagtgaatcacgtcatattctcaaattattatccgtgtcggtgtatcggtgtctgtg 675  Q
    |||||||||||||||||||| |||||||||||||||  |||||||| ||||||||||||||    
T  26665178 attacagtgaatcacgtcattttctcaaattattatttgtgtcggtttatcggtgtctgtg 26665118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 202 - 370
Target Start/End: Original strand, 15462019 - 15462186
Alignment:
Q  202 tgttactttttccatcctatgagtttctcgcgcgtcctatttggattttaaaatccgaaatatttcaatgtgtttttagaaatttttatggggtgtttat 301  Q
    ||||| ||||| || ||||||||||| |||| |  | |||||  | ||||||||| ||||||||| || ||||||| |||  ||||||||||||||||||    
T  15462019 tgttatttttttcaccctatgagtttttcgcacaccttatttaaaatttaaaatctgaaatatttaaacgtgtttt-agaggtttttatggggtgtttat 15462117  T
Q  302 gccgttcggattctataattcaaactgcatagggcgcgcaagaaactcatatggtgggaaaagaagcag 370  Q
    |||||| |||||||||||||| ||||||||| || |||| ||||||||||| | ||| |||||||||||    
T  15462118 gccgtttggattctataattcgaactgcataaggagcgcgagaaactcataggttggaaaaagaagcag 15462186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 204 - 334
Target Start/End: Complemental strand, 30670956 - 30670826
Alignment:
Q  204 ttactttttccatcctatgagtttctcgcgcgtcctatttggattttaaaatccgaaatatttcaatgtgtttttagaaatttttat-ggggtgtttatg 302  Q
    ||||||||  ||| ||||||||||||||||| || |||| ||||| ||||||| ||||| ||| |||||||||| | |||||||||| ||||||||||||    
T  30670956 ttacttttctcatactatgagtttctcgcgcatcttattcggattctaaaatctgaaatgttttaatgtgttttga-aaatttttataggggtgtttatg 30670858  T
Q  303 ccgttcggattctataattcaaactgcatagg 334  Q
    | ||||| ||||||||||| ||||| ||||||    
T  30670857 ctgttcgaattctataatttaaactacatagg 30670826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 204 - 348
Target Start/End: Original strand, 7925341 - 7925484
Alignment:
Q  204 ttactttttccatcctatgagtttctcgcgcgtcctatttggattttaaaatccgaaatatttcaatgtgtttttagaaatttttatggggtgtttatgc 303  Q
    |||||||||||| ||||||| |||||| || ||||||||| |||| ||||||| |||||||||||| || |||||  ||  |||||| |||||||||| |    
T  7925341 ttactttttccaccctatgaatttctcacgtgtcctatttagattctaaaatctgaaatatttcaacgtattttt-taaggttttatagggtgtttatac 7925439  T
Q  304 cgttcggattctataattcaaactgcatagggcgcgcaagaaact 348  Q
    | |||| |||||||| | | ||| ||||||||||||| |||||||    
T  7925440 cattcgaattctatattccgaaccgcatagggcgcgcgagaaact 7925484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 219 - 366
Target Start/End: Original strand, 1750080 - 1750227
Alignment:
Q  219 tatgagtttctcgcgcgtcctatttggattttaaaatccgaaatatttcaatgtgtttttagaaatttttatggggtgtttatgccgttcggattctata 318  Q
    ||||||||||||| |||||||||||||||| |||||||  |||| |||||| ||| |||  ||  ||| ||| ||||||||||  |||||||||||||||    
T  1750080 tatgagtttctcgtgcgtcctatttggattctaaaatctaaaatgtttcaacgtgatttaggaggtttgtatagggtgtttatttcgttcggattctata 1750179  T
Q  319 attcaaactgcatagggcgcgcaagaaactcatatggtgggaaaagaa 366  Q
    || ||||| | |||| ||| ||  |||||||||| ||||| |||||||    
T  1750180 atccaaacagtatagagcgtgcgggaaactcatagggtggaaaaagaa 1750227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 285 - 373
Target Start/End: Original strand, 31219246 - 31219334
Alignment:
Q  285 ttttatggggtgtttatgccgttcggattctataattcaaactgcatagggcgcgcaagaaactcatatggtgggaaaagaagcagtct 373  Q
    |||||||||| |||||||||||||||||||||||||   ||||||||||| | ||||||||  ||||| ||||||||||| ||||||||    
T  31219246 ttttatggggagtttatgccgttcggattctataatctgaactgcataggacacgcaagaagttcatagggtgggaaaagcagcagtct 31219334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 271 - 366
Target Start/End: Complemental strand, 42111012 - 42110917
Alignment:
Q  271 gtgtttttagaaatttttatggggtgtttatgccgttcggattctataattcaaactgcatagggcgcgcaagaaactcatatggtgggaaaagaa 366  Q
    |||||||| ||  ||||||||||||||||||| |||||| |||||||||| ||| ||||||||||||||| |||||||| || | ||| |||||||    
T  42111012 gtgtttttggaggtttttatggggtgtttatgtcgttcgaattctataatccaacctgcatagggcgcgcgagaaactcgtaagatggaaaaagaa 42110917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 197 - 276
Target Start/End: Original strand, 18395492 - 18395570
Alignment:
Q  197 aaggctgttactttttccatcctatgagtttctcgcgcgtcctatttggattttaaaatccgaaatatttcaatgtgttt 276  Q
    |||||| ||| |||| ||||||||||||||| ||||||| |||||||| ||| | |||||||||||||||||||||||||    
T  18395492 aaggctattatttttcccatcctatgagttt-tcgcgcgccctatttgtattctgaaatccgaaatatttcaatgtgttt 18395570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 231 - 313
Target Start/End: Original strand, 32998773 - 32998855
Alignment:
Q  231 gcgcgtcctatttggattttaaaatccgaaatatttcaatgtgtttttagaaatttttatggggtgtttatgccgttcggatt 313  Q
    ||||| |||||||| ||||||| |||| ||||||||||||||||||||  | ||||||||| |||||||||| |||| |||||    
T  32998773 gcgcgccctatttgaattttaagatccaaaatatttcaatgtgtttttgaagatttttatgaggtgtttatgtcgtttggatt 32998855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 292 - 374
Target Start/End: Complemental strand, 53852114 - 53852032
Alignment:
Q  292 gggtgtttatgccgttcggattctataattcaaactgcatagggcgcgcaagaaactcatatggtgggaaaagaagcagtctt 374  Q
    |||| |||||||| |||  |||||||||| | |||| ||||||||| |||||||||||||| ||||||||||||||| |||||    
T  53852114 gggtatttatgccattcaaattctataatccgaactacatagggcgagcaagaaactcatacggtgggaaaagaagcggtctt 53852032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 223 - 368
Target Start/End: Original strand, 44053379 - 44053523
Alignment:
Q  223 agtttctcgcgcgtcctatttggattttaaaatccgaaatatttcaatgtgtttttagaaatttttatggggtgtttatgccgttcggattctataattc 322  Q
    |||||||||| ||||||| | ||||| |||||||| |||||||| || ||| |||  ||  |||||||||| | |||||||||||||| || |||||| |    
T  44053379 agtttctcgcacgtcctaatcggattataaaatccaaaatattttaacgtgctttg-gaggtttttatgggatatttatgccgttcgggttatataatcc 44053477  T
Q  323 aaactgcatagggcgcgcaagaaactcatatggtgggaaaagaagc 368  Q
    |||||  ||||||||||| |||||   |||  ||||||||||||||    
T  44053478 aaactatatagggcgcgcgagaaatcgataaagtgggaaaagaagc 44053523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 204 - 363
Target Start/End: Original strand, 23771676 - 23771835
Alignment:
Q  204 ttactttttccatcctatgagtttctcgcgcgtcctatttggattttaaaatccgaaatatttcaatgtgttttta-gaaatttttatggggtgtttatg 302  Q
    ||||||||  || |||||||| || |||||||  ||||||||||| |||||||  |||||||||||  |||||||  | |  |||||||| || ||||||    
T  23771676 ttacttttcgcaccctatgagcttatcgcgcgctctatttggattctaaaatcttaaatatttcaacatgtttttttggaggttttatggagt-tttatg 23771774  T
Q  303 ccgttcggattctataattcaaactgcatagggcgcgcaagaaactcatatggtgggaaaa 363  Q
    | ||||| |||||| |||||||| ||||||| || ||  |||||||| |||||||||||||    
T  23771775 cagttcgaattctaaaattcaaattgcatagagcacgtgagaaactcgtatggtgggaaaa 23771835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 204 - 364
Target Start/End: Original strand, 51715009 - 51715167
Alignment:
Q  204 ttactttttccatcctatgagtttctcgcgcgtcctatttggattttaaaatccgaaatatttcaatgtgtttttagaaatttttatggggtgtttatgc 303  Q
    ||||||||  |||| || |||||||||||||| || ||| ||||| ||||||| ||||| ||| || ||| |||| ||  ||||||||||||||||||||    
T  51715009 ttacttttctcatcatacgagtttctcgcgcgcccgattcggattctaaaatctgaaatgttttaacgtg-ttttggaggtttttatggggtgtttatgc 51715107  T
Q  304 cgttcggattctataattcaaactgcatagggcgcgcaagaaactcatatggtgggaaaag 364  Q
     |||| ||||||||  ||| ||||||||||| || || |||||   ||||||||| |||||    
T  51715108 tgttc-gattctatttttcgaactgcataggccgtgcgagaaatcaatatggtggaaaaag 51715167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 208 - 366
Target Start/End: Original strand, 32808544 - 32808701
Alignment:
Q  208 tttttccatcctatgagtttctcgcgcgtcctatttggattttaaaatccgaaatatttcaatgtgtttttagaaatttttatggggtgtttatgccgtt 307  Q
    ||||||||||||||||||  ||||||||| ||||| |||||||||||||| |||| ||| ||| | ||||| | |  ||||||| | | |||||||  ||    
T  32808544 tttttccatcctatgagtacctcgcgcgttctattcggattttaaaatccaaaattttttaatttattttt-ggaggttttatgagatttttatgcactt 32808642  T
Q  308 cggattctataattcaaactgcatagggcgcgcaagaaactcatatggtgggaaaagaa 366  Q
    || |||||| |||  |||||||||||| |||| ||||| ||  ||  ||||||||||||    
T  32808643 cgaattctaaaatataaactgcataggacgcggaagaaccttctaaagtgggaaaagaa 32808701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 204 - 334
Target Start/End: Complemental strand, 36679370 - 36679242
Alignment:
Q  204 ttactttttccatcctatgagtttctcgcgcgtcctatttggattttaaaatccgaaatatttcaatgtgtttttagaaatttttatggggtgtttatgc 303  Q
    ||||||||  |||| |||||| ||||||||||  |||||||  || ||||||| ||||||||||||||| ||||| ||| |||||| | ||| |||||||    
T  36679370 ttacttttctcatcatatgagcttctcgcgcgctctatttgagttctaaaatctgaaatatttcaatgt-ttttttgaagtttttacgaggtttttatgc 36679272  T
Q  304 cgttcggattctataattcaaactgcatagg 334  Q
     ||| |||||||| || || |||||||||||    
T  36679271 agtttggattcta-aaatccaactgcatagg 36679242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 204 - 334
Target Start/End: Complemental strand, 36692985 - 36692857
Alignment:
Q  204 ttactttttccatcctatgagtttctcgcgcgtcctatttggattttaaaatccgaaatatttcaatgtgtttttagaaatttttatggggtgtttatgc 303  Q
    ||||||||  |||| |||||| ||||||||||  |||||||  || ||||||| ||||||||||||||| ||||| ||| |||||| | ||| |||||||    
T  36692985 ttacttttctcatcatatgagcttctcgcgcgctctatttgagttctaaaatctgaaatatttcaatgtattttt-gaagtttttacgaggtttttatgc 36692887  T
Q  304 cgttcggattctataattcaaactgcatagg 334  Q
     ||| |||||||| || || |||||||||||    
T  36692886 agtttggattcta-aaatccaactgcatagg 36692857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 204 - 266
Target Start/End: Original strand, 43726566 - 43726628
Alignment:
Q  204 ttactttttccatcctatgagtttctcgcgcgtcctatttggattttaaaatccgaaatattt 266  Q
    |||||||||||| | ||||||||||||||||| |||||| | ||||||||||| |||||||||    
T  43726566 ttactttttccaccttatgagtttctcgcgcgccctattagaattttaaaatcagaaatattt 43726628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 219 - 366
Target Start/End: Complemental strand, 51203308 - 51203162
Alignment:
Q  219 tatgagtttctcgcgcgtcctatttggattttaaaatccgaaatatttca-atgtgtttttagaaatttttatggggtgtttatgccgttcggattctat 317  Q
    ||||||||||||||||  |||||| | ||| |||| || ||||||||||| || | ||||| || | |||||| |||| ||||||  |||||||||||||    
T  51203308 tatgagtttctcgcgcaccctattcgaattctaaagtctgaaatatttcagatttttttttggaga-ttttat-gggtatttatgttgttcggattctat 51203211  T
Q  318 aattcaaactgcatagggcgcgcaagaaactcatatggtgggaaaagaa 366  Q
    ||||| ||||||||| ||||| | ||||||| ||| | ||| |||||||    
T  51203210 aattcgaactgcatatggcgcacgagaaactgataggatggaaaaagaa 51203162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 208 - 373
Target Start/End: Original strand, 25123224 - 25123388
Alignment:
Q  208 tttttccatcctatgagtttctcgcgcgtcctatttggattttaaaatccgaaatatttcaatgtgtttttagaaatttttatggggtgtttatgccgtt 307  Q
    |||||||| | ||||||||| ||||||| ||||||  |||| |||||||| |||||||| || | |||||| ||  |||| || |||| |||||||  ||    
T  25123224 tttttccaccatatgagtttttcgcgcgccctattcagattctaaaatccaaaatattttaacgcgtttttggaggtttt-atagggtttttatgcactt 25123322  T
Q  308 cggattctataattcaaactgcatagggcgcgcaagaaactcatatggtgggaaaagaagcagtct 373  Q
    ||||||||| ||| | | ||||||| | || |  |||||| |||| |||| |||||||| ||||||    
T  25123323 cggattctaaaatccgatctgcataagacgagtgagaaacacatagggtgagaaaagaaacagtct 25123388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 223 - 320
Target Start/End: Complemental strand, 26988773 - 26988677
Alignment:
Q  223 agtttctcgcgcgtcctatttggattttaaaatccgaaatatttcaatgtgtttttagaaatttttatggggtgtttatgccgttcggattctataat 320  Q
    |||||||||| ||| ||||||||||| |||||| | |||| ||| ||||| ||||| || | |||||||| ||||||||||||||   ||||||||||    
T  26988773 agtttctcgcacgtactatttggattctaaaattcaaaattttttaatgtattttt-gagaattttatggagtgtttatgccgtttaaattctataat 26988677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 208 - 277
Target Start/End: Complemental strand, 33513486 - 33513417
Alignment:
Q  208 tttttccatcctatgagtttctcgcgcgtcctatttggattttaaaatccgaaatatttcaatgtgtttt 277  Q
    |||||||| ||||||||||||| | ||  |||||| ||||| |||||||| ||||||||||| |||||||    
T  33513486 tttttccaccctatgagtttcttgtgcaccctattcggattctaaaatcctaaatatttcaacgtgtttt 33513417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 591 - 662
Target Start/End: Complemental strand, 25365528 - 25365457
Alignment:
Q  591 tcggtgcccgacacgacgtctatgattacagtgaatcacgtcatattctcaaattattatccgtgtcggtgt 662  Q
    |||||| ||||||||||   ||||||||||  |||| | ||||||||||||||||||||||| || ||||||    
T  25365528 tcggtgtccgacacgacacttatgattacaccgaattatgtcatattctcaaattattatccatgccggtgt 25365457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 243
Target Start/End: Original strand, 25468648 - 25468687
Alignment:
Q  204 ttactttttccatcctatgagtttctcgcgcgtcctattt 243  Q
    ||||||||||||||||||| ||| ||||||||||||||||    
T  25468648 ttactttttccatcctatgtgttactcgcgcgtcctattt 25468687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 332
Target Start/End: Complemental strand, 41266844 - 41266722
Alignment:
Q  206 actttttccatcctatgagtttctcgcgcgtcctatttggattttaaaatccgaaatatttcaatgtgtttttagaaatttttatggggtgtttatgccg 305  Q
    |||||||| ||| ||| |||||||| ||  || |||||  ||| |||||| | |||||||| ||||||||||| || | |||||||||||||| |||| |    
T  41266844 actttttcaatcttattagtttctcacg--tcttatttaaattgtaaaattcaaaatattt-aatgtgttttt-gagagttttatggggtgttaatgctg 41266749  T
Q  306 ttcggattctataattcaaactgcata 332  Q
    || ||||| |||||| |||||||||||    
T  41266748 ttgggattttataatccaaactgcata 41266722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 598 - 656
Target Start/End: Original strand, 12704657 - 12704715
Alignment:
Q  598 ccgacacgacgtctatgattacagtgaatcacgtcatattctcaaattattatccgtgt 656  Q
    ||||||||||  ||||||||||| ||||| | ||||| || ||||||||||||||||||    
T  12704657 ccgacacgacacctatgattacattgaattatgtcattttttcaaattattatccgtgt 12704715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 304 - 362
Target Start/End: Original strand, 21435646 - 21435704
Alignment:
Q  304 cgttcggattctataattcaaactgcatagggcgcgcaagaaactcatatggtgggaaa 362  Q
    |||||| |||||||||| | ||||||||||||| ||||||||||| ||| ||| |||||    
T  21435646 cgttcgaattctataatccgaactgcatagggcacgcaagaaacttatagggtaggaaa 21435704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 334
Target Start/End: Original strand, 20704921 - 20705057
Alignment:
Q  197 aaggctgttactttttccatcctatgagtttctcgcgcgtcctatttggattttaaaatccgaaatatttcaatgtgtttttagaaatttttatggggtg 296  Q
    |||| |||||||||||| | ||||| ||||| |||||| | |||||  |||||||||||  ||||| ||| ||  | ||||| ||  |||||||| | ||    
T  20704921 aagggtgttactttttc-accctataagtttttcgcgcattctattcagattttaaaatttgaaatgttttaacatatttttggaggtttttatgagatg 20705019  T
Q  297 tttatgccgttcggattctataattcaaactgcatagg 334  Q
    || || ||||| ||||||||||||  ||||||||||||    
T  20705020 ttgataccgtttggattctataatctaaactgcatagg 20705057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 598 - 659
Target Start/End: Complemental strand, 25074848 - 25074787
Alignment:
Q  598 ccgacacgacgtctatgattacagtgaatcacgtcatattctcaaattattatccgtgtcgg 659  Q
    ||||||| ||| ||||||||||| | ||| | ||||| |||||||||||||||| |||||||    
T  25074848 ccgacacaacgcctatgattacactcaattatgtcattttctcaaattattatcggtgtcgg 25074787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 591 - 659
Target Start/End: Complemental strand, 15864899 - 15864831
Alignment:
Q  591 tcggtgcccgacacgacgtctatgattacagtgaatcacgtcatattctcaaattattatccgtgtcgg 659  Q
    |||||| ||||||||||  ||||||||||| | ||| |  |||| || |||||||||||||||||||||    
T  15864899 tcggtgtccgacacgacacctatgattacactaaattatatcattttttcaaattattatccgtgtcgg 15864831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 208 - 320
Target Start/End: Original strand, 25838064 - 25838175
Alignment:
Q  208 tttttccatcctatgagtttctcgcgcgtcctatttggattttaaaatccgaaatatttcaatgtgtttttagaaatttttatggggtgtttatgccgtt 307  Q
    ||||| |||||||| | ||| ||| ||||||||||  |||| |||||||| |||||||||||  ||||||| ||  ||||||| || | | ||||  |||    
T  25838064 ttttttcatcctataaatttttcgtgcgtcctattcagattctaaaatccaaaatatttcaacatgttttt-gaggtttttataggctatctatgttgtt 25838162  T
Q  308 cggattctataat 320  Q
    |||||||||||||    
T  25838163 cggattctataat 25838175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 295 - 367
Target Start/End: Complemental strand, 39745569 - 39745497
Alignment:
Q  295 tgtttatgccgttcggattctataattcaaactgcatagggcgcgcaagaaactcatatggtgggaaaagaag 367  Q
    |||||||||||||||||| ||||||| | ||||||||||  ||| | |||||| ||   ||||||||||||||    
T  39745569 tgtttatgccgttcggatcctataatccgaactgcatagaacgcacgagaaacccaacaggtgggaaaagaag 39745497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 218 - 289
Target Start/End: Original strand, 42088031 - 42088103
Alignment:
Q  218 ctatgagtttctcgcgcgtcctatttggattttaaaatccgaaatatttc-aatgtgtttttagaaattttta 289  Q
    |||||||||| ||| ||||||||||  ||||||||||||  ||||||||| || || ||||||||| ||||||    
T  42088031 ctatgagtttttcgtgcgtcctattctgattttaaaatctaaaatatttcaaacgtatttttagaagttttta 42088103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 598 - 658
Target Start/End: Complemental strand, 52369834 - 52369774
Alignment:
Q  598 ccgacacgacgtctatgattacagtgaatcacgtcatattctcaaattattatccgtgtcg 658  Q
    ||||||||||  ||||||||||| ||||| | || || ||||||||||||||||| |||||    
T  52369834 ccgacacgacacctatgattacattgaattatgtaattttctcaaattattatccatgtcg 52369774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 78; Significance: 6e-36; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 204 - 369
Target Start/End: Complemental strand, 13019762 - 13019597
Alignment:
Q  204 ttactttttccatcctatgagtttctcgcgcgtcctatttggattttaaaatccgaaatatttcaatgtgtttttagaaatttttatggggtgtttatgc 303  Q
    |||||||||||| ||||||||||||||||| ||||| || |||||| |||||| ||||  |||||||||| ||||  | |||||||||| ||||||||||    
T  13019762 ttactttttccaccctatgagtttctcgcgtgtccttttcggatttgaaaatctgaaacgtttcaatgtgattttgaagatttttatggagtgtttatgc 13019663  T
Q  304 cgttcggattctataattcaaactgcatagggcgcgcaagaaactcatatggtgggaaaagaagca 369  Q
    ||||||||||||||||| ||||||||||||| |||   ||||  |||||  |||||||||||||||    
T  13019662 cgttcggattctataatccaaactgcataggacgcatgagaagttcatagagtgggaaaagaagca 13019597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 204 - 366
Target Start/End: Complemental strand, 38308188 - 38308027
Alignment:
Q  204 ttactttttccatcctatgagtttctcgcgcgtcctatttggattttaaaatccgaaatatttcaatgtgtttttagaaatttttatggggtgtttatgc 303  Q
    |||||||||||| |||| |||| ||| ||||| ||||||    |||||||||| ||||| |||||| ||||||||  || ||||||| ||||||||||||    
T  38308188 ttactttttccacccta-gagtgtcttgcgcgccctattctagttttaaaatctgaaatgtttcaacgtgtttttgaaagtttttatagggtgtttatgc 38308090  T
Q  304 cgttcggattctataattcaaactgcatagggcgcgcaagaaactcatatggtgggaaaagaa 366  Q
    ||||||||||||||||||||||||||||| | | | | ||||| | ||| |||||||||||||    
T  38308089 cgttcggattctataattcaaactgcataagacacacgagaaattaatagggtgggaaaagaa 38308027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 202 - 370
Target Start/End: Original strand, 24510891 - 24511058
Alignment:
Q  202 tgttactttttccatcctatgagtttctcgcgcgtcctatttggattttaaaatccgaaatatttcaatgtgtttttagaaatttttatggggtgtttat 301  Q
    |||||||||||||| ||||||||||| || | |  |||||| ||||||||||||| ||||||||| || || ||||  ||  |||||||||| |||||||    
T  24510891 tgttactttttccaccctatgagtttttcacacaccctattcggattttaaaatctgaaatatttaaacgtattttg-gaggtttttatgggatgtttat 24510989  T
Q  302 gccgttcggattctataattcaaactgcatagggcgcgcaagaaactcatatggtgggaaaagaagcag 370  Q
    |||||| | |||||||||||| ||||||||||||  ||| ||||| ||||| | ||  |||||||||||    
T  24510990 gccgtttgaattctataattcgaactgcatagggaacgcgagaaattcataggttgaaaaaagaagcag 24511058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 237 - 366
Target Start/End: Original strand, 45203216 - 45203344
Alignment:
Q  237 cctatttggattttaaaatccgaaatatttcaatgtgtttttagaaatttttatggggtgtttatgccgttcggattctataattcaaactgcatagggc 336  Q
    |||||| ||||| ||||||||||||||||||||||||||||| | |  ||||||||| | ||||||  |||||||||||| ||||| ||| ||||||| |    
T  45203216 cctattcggattctaaaatccgaaatatttcaatgtgtttttcg-aggttttatgggatttttatgtagttcggattctaaaattcgaacggcataggac 45203314  T
Q  337 gcgcaagaaactcatatggtgggaaaagaa 366  Q
    |||  ||||||||||| ||||  |||||||    
T  45203315 gcgtgagaaactcatagggtgaaaaaagaa 45203344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 204 - 366
Target Start/End: Original strand, 5867902 - 5868062
Alignment:
Q  204 ttactttttccatcctatgagtttctcgcgcgtcctatttggattttaaaatccgaaatatttcaatgtgtttttagaaatttttatggggtgtttatgc 303  Q
    |||||||||||  ||||| || |||||||| |  ||||| | ||||||||||| |||||||||||| |||||||| || ||||| ||| ||  |||||||    
T  5867902 ttactttttccgccctataagcttctcgcgtgctctattcg-attttaaaatctgaaatatttcaacgtgtttttggagatttt-atgtgggttttatgc 5867999  T
Q  304 cgttcggattctataattcaaactgcatagggcgcgcaagaaactcatatggtgggaaaagaa 366  Q
     |||||||||||| ||||| || || ||||||||||  ||||||||||| | || ||||||||    
T  5868000 agttcggattctaaaattcgaattgtatagggcgcgtgagaaactcataggatgagaaaagaa 5868062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 204 - 335
Target Start/End: Original strand, 43050111 - 43050241
Alignment:
Q  204 ttactttttccatcctatgagtttctcgcgcgtcctatttggattttaaaatccgaaatatttcaatgtgtttttagaaatttttatggggtgtttatgc 303  Q
    |||||||| ||| ||||||||||||| || || | |||| ||||||||||||| ||||| |||||| ||| |||| ||  ||||||  |||| ||||||     
T  43050111 ttacttttcccaccctatgagtttcttgcacgccttattcggattttaaaatctgaaatgtttcaacgtg-ttttggaggtttttacagggtatttatgt 43050209  T
Q  304 cgttcggattctataattcaaactgcataggg 335  Q
    |||| |||||||||||| | ||||||||||||    
T  43050210 cgtttggattctataatccgaactgcataggg 43050241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 238 - 339
Target Start/End: Complemental strand, 7268632 - 7268532
Alignment:
Q  238 ctatttggattttaaaatccgaaatatttcaatgtgtttttagaaatttttatggggtgtttatgccgttcggattctataattcaaactgcatagggcg 337  Q
    ||||| ||||| ||||||||||||||||||||  | |||||| ||| ||||||| | | ||||||| ||||| |||||| |||||||||||||||| |||    
T  7268632 ctattcggattataaaatccgaaatatttcaaaatattttta-aaagttttatgagatttttatgcggttcgaattctaaaattcaaactgcatagcgcg 7268534  T
Q  338 cg 339  Q
    ||    
T  7268533 cg 7268532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 217 - 366
Target Start/End: Complemental strand, 10696451 - 10696303
Alignment:
Q  217 cctatgagtttctcgcgcgtcctatttggattttaaaatccgaaatatttcaatgtgtttttagaaatttttatggggtgtttatgccgttcggattcta 316  Q
    |||||||  |||||||||   ||||| | ||| |||||||| ||||||||||| || ||||| |||  ||||| ||||| ||||||| ||| ||||||||    
T  10696451 cctatgaagttctcgcgcactctattcgaattctaaaatccaaaatatttcaacgtattttt-gaaggttttacggggtttttatgcagtttggattcta 10696353  T
Q  317 taattcaaactgcatagggcgcgcaagaaactcatatggtgggaaaagaa 366  Q
     ||| ||||||||||||||| |   ||||||||||| |||| ||||||||    
T  10696352 aaatccaaactgcatagggcacatgagaaactcatagggtgtgaaaagaa 10696303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 208 - 319
Target Start/End: Original strand, 24166794 - 24166904
Alignment:
Q  208 tttttccatcctatgagtttctcgcgcgtcctatttggattttaaaatccgaaatatttcaatgtgtttttagaaatttttatggggtgtttatgccgtt 307  Q
    |||||||| |||||||||||||| |||| |||||| ||||| | |||| |||||||||||||  ||||||||| |  |||||||| || |||||| ||||    
T  24166794 tttttccaccctatgagtttctcacgcgccctattcggattcttaaattcgaaatatttcaacatgtttttag-aggttttatggagtttttatggcgtt 24166892  T
Q  308 cggattctataa 319  Q
      ||||||||||    
T  24166893 tagattctataa 24166904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 203 - 366
Target Start/End: Original strand, 28185919 - 28186083
Alignment:
Q  203 gttactttttccatcctatgagtttctcgcgcgtcctatttggattttaaaatccgaaatatttcaatgtgtttttagaaatttttatggggtgtttatg 302  Q
    ||||||||||||| |||| ||||||||  || |||| ||| | ||| ||||||||||||||||||||||| ||||| || | |||||||| |  | ||||    
T  28185919 gttactttttccaccctacgagtttcttacgtgtcccattcgaattataaaatccgaaatatttcaatgtattttttgaga-ttttatggagattctatg 28186017  T
Q  303 ccgttcgg--attctataattcaaactgcatagggcgcgcaagaaactcatatggtgggaaaagaa 366  Q
    | ||||||  |||||| ||| | || |||||| | ||||  |||| |||||| |||||||||||||    
T  28186018 ctgttcggatattctaaaatccgaattgcatatgacgcgtgagaatctcatagggtgggaaaagaa 28186083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 207 - 316
Target Start/End: Original strand, 25314699 - 25314807
Alignment:
Q  207 ctttttccatcctatgagtttctcgcgcgtcctatttggattttaaaatccgaaatatttcaatgtgtttttagaaatttttatggggtgtttatgccgt 306  Q
    ||||| ||| |||||||||||||||| || |||||| ||||| |||||||| ||||| ||||  ||||||| || || |||| |||| | ||||||| ||    
T  25314699 cttttcccaccctatgagtttctcgcacgccctattcggattctaaaatccaaaatacttcatcgtgttttcag-aagttttctgggctttttatgcagt 25314797  T
Q  307 tcggattcta 316  Q
    ||||||||||    
T  25314798 tcggattcta 25314807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 219 - 304
Target Start/End: Original strand, 34810299 - 34810384
Alignment:
Q  219 tatgagtttctcgcgcgtcctatttggattttaaaatccgaaatatttcaatgtgtttttagaaatttttatggggtgtttatgcc 304  Q
    ||||||||||||||||   ||||||  ||| |||||| |||||||||||||| |||||||  | ||||||||||| ||||||||||    
T  34810299 tatgagtttctcgcgcactctatttaaattctaaaattcgaaatatttcaatatgtttttgaagatttttatgggatgtttatgcc 34810384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 204 - 277
Target Start/End: Original strand, 37267710 - 37267783
Alignment:
Q  204 ttactttttccatcctatgagtttctcgcgcgtcctatttggattttaaaatccgaaatatttcaatgtgtttt 277  Q
    |||||||||||| | |||||| |||||| | | |||||||||||| ||||||||||||||||| || |||||||    
T  37267710 ttactttttccaccttatgagcttctcgtgtgccctatttggattctaaaatccgaaatattttaacgtgtttt 37267783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 190 - 339
Target Start/End: Complemental strand, 44647316 - 44647169
Alignment:
Q  190 tttaaataaggctgttactttttccatcctatgagtttctcgcgcgtcctatttggattttaaaatccgaaatatttcaatgtgtttttagaaattttta 289  Q
    |||| ||| ||| |||||||||| |||||||| || || |||||||||||| || |||| |||||| |||||||| | ||| | |||||||   ||||||    
T  44647316 tttatatatggccgttacttttttcatcctataagcttatcgcgcgtcctacttagattctaaaattcgaaatatcttaatttttttttag--gttttta 44647219  T
Q  290 tggggtgtttatgccgttcggattctataattcaaactgcatagggcgcg 339  Q
    ||   |||||| | |||| ||||||||||||  ||| || ||||||||||    
T  44647218 tgatatgtttacgacgtttggattctataatcaaaattgtatagggcgcg 44647169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 285 - 334
Target Start/End: Complemental strand, 19943519 - 19943470
Alignment:
Q  285 ttttatggggtgtttatgccgttcggattctataattcaaactgcatagg 334  Q
    |||||| || ||||||||||||| |||||||||||| |||||||||||||    
T  19943519 ttttataggttgtttatgccgtttggattctataatccaaactgcatagg 19943470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 598 - 670
Target Start/End: Original strand, 11308004 - 11308075
Alignment:
Q  598 ccgacacgacgtctatgattacagtgaatcacgtcatattctcaaattattatccgtgtcggtgtatcggtgt 670  Q
    ||||||||||  ||||||||||| ||||| | ||||| || |||||||| ||||||||||||| |||||||||    
T  11308004 ccgacacgacacctatgattacactgaattatgtcattttttcaaatta-tatccgtgtcggtatatcggtgt 11308075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 598 - 662
Target Start/End: Complemental strand, 25544540 - 25544476
Alignment:
Q  598 ccgacacgacgtctatgattacagtgaatcacgtcatattctcaaattattatccgtgtcggtgt 662  Q
    ||||||||||  ||||||||||| ||||| |  |||| ||||||||||||||| |||||||||||    
T  25544540 ccgacacgacacctatgattacactgaattatatcattttctcaaattattatacgtgtcggtgt 25544476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 236 - 335
Target Start/End: Complemental strand, 13378477 - 13378378
Alignment:
Q  236 tcctatttggattttaaaatccgaaatatttcaatgtgtttttagaaatttttatggggtgtttatgccgttcggattctataattcaaactgcataggg 335  Q
    ||||||| ||||| ||||||| ||||||||||||||||||||| ||  |||||      | |||||||  ||||||||||| |||||||| |||||||||    
T  13378477 tcctattcggattataaaatctgaaatatttcaatgtgtttttggaggtttttgaattttttttatgcaattcggattctaaaattcaaattgcataggg 13378378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 204 - 338
Target Start/End: Original strand, 34190769 - 34190902
Alignment:
Q  204 ttactttttccatcctatgagtttctcgcgcgtcctatttggattttaaaatccgaaatatttcaatgtgtttttagaaatttttatggggtgtttatgc 303  Q
    |||||||||||| | ||||||| |||| |  |||||||| | ||| ||||||  ||||| ||| ||||||||||   | ||||||||| |||||||||||    
T  34190769 ttactttttccaccttatgagtatctcccatgtcctattcgaattctaaaatt-gaaatgttttaatgtgttttggaagatttttatgaggtgtttatgc 34190867  T
Q  304 cgttcggattctataattcaaactgcatagggcgc 338  Q
      ||||||||  ||||| |||| |||||| |||||    
T  34190868 tattcggatttaataatccaaattgcataaggcgc 34190902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 611 - 664
Target Start/End: Original strand, 10535772 - 10535825
Alignment:
Q  611 tatgattacagtgaatcacgtcatattctcaaattattatccgtgtcggtgtat 664  Q
    |||||||||| ||||| | ||||| |||||||||||||||| ||||||| ||||    
T  10535772 tatgattacactgaattatgtcattttctcaaattattatcggtgtcggcgtat 10535825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 284 - 352
Target Start/End: Original strand, 775069 - 775137
Alignment:
Q  284 tttttatggggtgtttatgccgttcggattctataattcaaactgcatagggcgcgcaagaaactcata 352  Q
    |||||||||||| ||||| || |||||||||||||||  |||||  ||||| ||||  |||||||||||    
T  775069 tttttatggggtatttattccattcggattctataatctaaactttataggacgcgtgagaaactcata 775137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 246 - 278
Target Start/End: Original strand, 28245022 - 28245054
Alignment:
Q  246 attttaaaatccgaaatatttcaatgtgttttt 278  Q
    ||||||||||||| |||||||||||||||||||    
T  28245022 attttaaaatccggaatatttcaatgtgttttt 28245054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 77; Significance: 2e-35; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 204 - 352
Target Start/End: Original strand, 17115881 - 17116029
Alignment:
Q  204 ttactttttccatcctatgagtttctcgcgcgtcctatttggattttaaaatccgaaatatttcaatgtgtttttagaaatttttatggggtgtttatgc 303  Q
    |||||||||| |||||||||||||  | ||||| |||||||||||||||||||  ||||||||||| ||||||||  || |||||||||||||||||||     
T  17115881 ttactttttctatcctatgagttttcctcgcgttctatttggattttaaaatctaaaatatttcaacgtgtttttgaaagtttttatggggtgtttatgt 17115980  T
Q  304 cgttcggattctataattcaaactgcatagggcgcgcaagaaactcata 352  Q
    |||||| |||||||||| |||||||| |||| || || |||||||||||    
T  17115981 cgttcgaattctataatacaaactgcgtaggacgtgcgagaaactcata 17116029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 204 - 375
Target Start/End: Complemental strand, 22713533 - 22713363
Alignment:
Q  204 ttactttttccatcctatgagtttctcgcgcgtcctatttggattttaaaatccgaaatatttcaatgtgtttttagaaatttttatggggtgtttatgc 303  Q
    |||||||||||| | ||||||||||||| ||| |||||||| ||||||||||| |||||||||||| |||||||| ||  ||||||  ||||||||||||    
T  22713533 ttactttttccaccttatgagtttctcgtgcg-cctatttgaattttaaaatctgaaatatttcaacgtgtttttggaggtttttacagggtgtttatgc 22713435  T
Q  304 cgttcggattctataattcaaactgcatagggcgcgcaagaaactcatatggtgggaaaagaagcagtcttt 375  Q
    | |||||||| ||||||  |||||  |||| | |||  ||||||||||| | ||||||||||||| ||||||    
T  22713434 cattcggattttataatctaaactatatagagtgcgtgagaaactcataagatgggaaaagaagcggtcttt 22713363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 204 - 357
Target Start/End: Complemental strand, 3255241 - 3255088
Alignment:
Q  204 ttactttttccatcctatgagtttctcgcgcgtcctatttggattttaaaatccgaaatatttcaatgtgtttttagaaatttttatggggtgtttatgc 303  Q
    |||||||||| |  ||||||||||||||||||  ||||| ||||| |||||||  |||||||||||| | |||||  |  ||||||||||||||||||||    
T  3255241 ttactttttctactctatgagtttctcgcgcgctctattcggattctaaaatctaaaatatttcaatatatttttgaaggtttttatggggtgtttatgc 3255142  T
Q  304 cgttcggattctataattcaaactgcatagggcgcgcaagaaactcatatggtg 357  Q
    ||||| |||| |||||| | |||||||||| || | | ||||||||||| ||||    
T  3255141 cgttctgattatataatccgaactgcatagagcacacgagaaactcatagggtg 3255088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 204 - 371
Target Start/End: Original strand, 44453596 - 44453762
Alignment:
Q  204 ttactttttccatcctatgagtttctcgcgcgtcctatttggattttaaaatccgaaatatttcaatgtgtttttagaaatttttatggggtgtttatgc 303  Q
    ||||||||| || ||||| |||||||||  ||||||||| ||||| |||||| ||||||||||||| |||||||| | || |||||||| || ||||| |    
T  44453596 ttacttttttcaccctataagtttctcgtacgtcctattcggattctaaaattcgaaatatttcaacgtgttttt-ggaagttttatggagtctttatac 44453694  T
Q  304 cgttcggattctataattcaaactgcatagggcgcgcaagaaactcatatggtgggaaaagaagcagt 371  Q
     |||||||||||| ||| | ||||| |||| |||||  ||||||||||| | |  |||||||||||||    
T  44453695 agttcggattctaaaatgcgaactgtatagagcgcgtgagaaactcataagataagaaaagaagcagt 44453762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 193 - 336
Target Start/End: Complemental strand, 35356494 - 35356353
Alignment:
Q  193 aaataaggctgttactttttccatcctatgagtttctcgcgcgtcctatttggattttaaaatccgaaatatttcaatgtgtttttagaaatttttatgg 292  Q
    ||||||||  |||||||||  |||||| ||||||||||| |||||||||||| ||| ||||||||||||| ||| || ||| |||| ||  |||||||||    
T  35356494 aaataaggtcgttacttttctcatcctttgagtttctcgtgcgtcctatttgaattctaaaatccgaaatgttttaacgtg-ttttggaggtttttatgg 35356396  T
Q  293 ggtgtttatgccgttcggattctataattcaaactgcatagggc 336  Q
    ||| |||| | |||||||||| |||||| | |||||||||||||    
T  35356395 ggt-tttacgtcgttcggattatataatccgaactgcatagggc 35356353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 204 - 269
Target Start/End: Original strand, 2391582 - 2391647
Alignment:
Q  204 ttactttttccatcctatgagtttctcgcgcgtcctatttggattttaaaatccgaaatatttcaa 269  Q
    ||||||||| ||||||||||||||||||||||  ||||||||||| ||||||||||||||||||||    
T  2391582 ttacttttttcatcctatgagtttctcgcgcgcactatttggattctaaaatccgaaatatttcaa 2391647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 208 - 348
Target Start/End: Complemental strand, 10382105 - 10381968
Alignment:
Q  208 tttttccatcctatgagtttctcgcgcgtcctatttggattttaaaatccgaaatatttcaatgtgtttttagaaatttttatggggtgtttatgccgtt 307  Q
    |||||||||| ||||| |||||||| |||| ||||  ||||||||||||||||| |||| || |||||||| |||  ||||||||||| ||||||  | |    
T  10382105 tttttccatcgtatgactttctcgcacgtcttattaagattttaaaatccgaaa-attttaacgtgttttt-gaaggttttatggggtttttatg-tggt 10382009  T
Q  308 cggattctataattcaaactgcatagggcgcgcaagaaact 348  Q
    ||||||||| ||| ||||||||||||| ||||  |||||||    
T  10382008 cggattctaaaatccaaactgcataggacgcgtgagaaact 10381968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 204 - 277
Target Start/End: Original strand, 48392385 - 48392458
Alignment:
Q  204 ttactttttccatcctatgagtttctcgcgcgtcctatttggattttaaaatccgaaatatttcaatgtgtttt 277  Q
    |||| |||| ||| |||||||||||||| | ||| |||||||||||||||||||||||| ||| || |||||||    
T  48392385 ttacatttttcattctatgagtttctcgtgtgtcatatttggattttaaaatccgaaatcttttaaggtgtttt 48392458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 216 - 352
Target Start/End: Complemental strand, 35424983 - 35424848
Alignment:
Q  216 tcctatgagtttctcgcgcgtcctatttggattttaaaatccgaaatatttcaatgtgtttttagaaatttttatggggtgtttatgccgttcggattct 315  Q
    |||||||||||||||| ||| |||| | | ||| ||||||| ||||||||| ||  | ||||  ||  |||||||| | |||||||||||||| ||||||    
T  35424983 tcctatgagtttctcgtgcgccctaatcgaattctaaaatctgaaatattttaacatattttg-gaggtttttatgcgatgtttatgccgttcagattct 35424885  T
Q  316 ataattcaaactgcatagggcgcgcaagaaactcata 352  Q
    ||||| |||||| |||||| ||| | ||||| |||||    
T  35424884 ataatccaaactacataggacgcacgagaaattcata 35424848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 237 - 320
Target Start/End: Original strand, 17298394 - 17298477
Alignment:
Q  237 cctatttggattttaaaatccgaaatatttcaatgtgtttttagaaatttttatggggtgtttatgccgttcggattctataat 320  Q
    ||||||| |||| |||| |||||||| ||| || ||||||||  | |||| ||| |||||||||||||||| ||||||||||||    
T  17298394 cctatttagattctaaattccgaaatgttttaaagtgtttttgaacatttctatagggtgtttatgccgtttggattctataat 17298477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 204 - 278
Target Start/End: Complemental strand, 26971477 - 26971404
Alignment:
Q  204 ttactttttccatcctatgagtttctcgcgcgtcctatttggattttaaaatccgaaatatttcaatgtgttttt 278  Q
    |||||||||||||| || ||| |||||||||| | |||| |  |||||||||||||||||||||||||| |||||    
T  26971477 ttactttttccatcttacgaggttctcgcgcg-cttattcgagttttaaaatccgaaatatttcaatgtattttt 26971404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 203 - 320
Target Start/End: Original strand, 20953185 - 20953302
Alignment:
Q  203 gttactttttccatcctatgagtttctcgcgcgtcctatttggattttaaaatccgaaatatttcaatgtgtttttagaaatttttatggggtgtttatg 302  Q
    ||||||||||||||  ||| |||||||| ||||| ||||| |||||||||||||  |||| ||||||  ||||||| || | ||||||  | | ||||||    
T  20953185 gttactttttccatgttataagtttctcacgcgttctattgggattttaaaatctaaaatgtttcaacatgttttttgagaattttataagatatttatg 20953284  T
Q  303 ccgttcggattctataat 320  Q
      ||||| ||||||||||    
T  20953285 ttgttcgaattctataat 20953302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 209 - 278
Target Start/End: Original strand, 31459410 - 31459479
Alignment:
Q  209 ttttccatcctatgagtttctcgcgcgtcctatttggattttaaaatccgaaatatttcaatgtgttttt 278  Q
    ||||||| ||||| ||||||||| | ||||||||   |||||||||||||||||||||||| || |||||    
T  31459410 ttttccaccctataagtttctcgtgtgtcctattcaaattttaaaatccgaaatatttcaacgtattttt 31459479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 217 - 278
Target Start/End: Original strand, 40256819 - 40256880
Alignment:
Q  217 cctatgagtttctcgcgcgtcctatttggattttaaaatccgaaatatttcaatgtgttttt 278  Q
    ||||||||||| ||||||| | |||| ||||||||||||| |||||||| ||| ||||||||    
T  40256819 cctatgagtttttcgcgcgccttattcggattttaaaatctgaaatattgcaacgtgttttt 40256880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 601 - 675
Target Start/End: Original strand, 22683758 - 22683830
Alignment:
Q  601 acacgacgtctatgattacagtgaatcacgtcatattctcaaattattatccgtgtcggtgtatcggtgtctgtg 675  Q
    |||||||  |||||||| || ||||| |  |||||||||||||||||||||||| ||||||  ||||||||||||    
T  22683758 acacgacacctatgattgcactgaattatatcatattctcaaattattatccgtctcggtg--tcggtgtctgtg 22683830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 204 - 322
Target Start/End: Complemental strand, 39560131 - 39560012
Alignment:
Q  204 ttactttttccatcctatgagtttctcgcgc--gtcctatttggattttaaaatccgaaatatttcaatgtgtttttagaaatttttatggggtgtttat 301  Q
    |||| ||||||| ||||| |||||||| |||  ||| ||||  ||||||||||| ||||||||||||  ||||||||  |   ||||||||| |||||||    
T  39560131 ttacattttccaccctatcagtttctctcgcacgtcatattcagattttaaaattcgaaatatttcaccgtgtttttgaaggattttatgggatgtttat 39560032  T
Q  302 gccgttcggattctataattc 322  Q
    |  ||||| ||||||||||||    
T  39560031 g-agttcgaattctataattc 39560012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 610 - 662
Target Start/End: Original strand, 7133290 - 7133342
Alignment:
Q  610 ctatgattacagtgaatcacgtcatattctcaaattattatccgtgtcggtgt 662  Q
    ||||||||||| ||||| | ||||| |||||||||||| ||| ||||||||||    
T  7133290 ctatgattacactgaattatgtcattttctcaaattatcatctgtgtcggtgt 7133342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 610 - 658
Target Start/End: Complemental strand, 23930266 - 23930218
Alignment:
Q  610 ctatgattacagtgaatcacgtcatattctcaaattattatccgtgtcg 658  Q
    ||||||||||| ||||| | ||||| ||||||||||| |||||||||||    
T  23930266 ctatgattacactgaattatgtcattttctcaaattactatccgtgtcg 23930218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 3e-34; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 204 - 366
Target Start/End: Complemental strand, 27157786 - 27157625
Alignment:
Q  204 ttactttttccatcctatgagtttctcgcgcgtcctatttggattttaaaatccgaaatatttcaatgtgtttttagaaatttttatggggtgtttatgc 303  Q
    |||||||||||| ||||||||||||||| |||| ||||| ||||| ||||||||||| |||||||| ||| |||| || | ||||||||||| |||||||    
T  27157786 ttactttttccaccctatgagtttctcgtgcgtgctattcggattctaaaatccgaattatttcaacgtggttttggaga-ttttatggggtatttatgc 27157688  T
Q  304 cgttcggattctataattcaaactgcatagggcgcgcaagaaactcatatggtgggaaaagaa 366  Q
    | ||||||||||||||| | || |||||||||||| | | ||||| ||| |||||||||||||    
T  27157687 cattcggattctataatccgaaatgcatagggcgcacgataaactgatagggtgggaaaagaa 27157625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 203 - 352
Target Start/End: Original strand, 37507534 - 37507682
Alignment:
Q  203 gttactttttccatcctatgagtttctcgcgcgtcctatttggattttaaaatccgaaatatttcaatgtgtttttagaaatttttatggggtgtttatg 302  Q
    ||||||||| ||| ||||||||||||| ||||| |||||| | ||| ||||||||||||| |||||| ||| |||| ||  |||||||||||| ||||||    
T  37507534 gttacttttcccaccctatgagtttcttgcgcgccctattcgaattctaaaatccgaaatgtttcaacgtg-ttttggaggtttttatggggtatttatg 37507632  T
Q  303 ccgttcggattctataattcaaactgcatagggcgcgcaagaaactcata 352  Q
     ||||| ||||||||||  |||| ||||||||  || | |||||||||||    
T  37507633 tcgttcagattctataaaccaaattgcataggaagcacgagaaactcata 37507682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 207 - 368
Target Start/End: Original strand, 40506615 - 40506776
Alignment:
Q  207 ctttttccatcctatgagtttctcgcgcgtcctatttggattttaaaatccgaaatatttcaatgtgtttttagaaatttttatggggtgtttatgccgt 306  Q
    |||||| ||||||||||||||||||   | |||||||||||| |||||||||||||||||||| ||| |||| ||  ||||||||| ||||||||  | |    
T  40506615 cttttttcatcctatgagtttctcgtatgccctatttggattgtaaaatccgaaatatttcaacgtgattttggaggtttttatggagtgtttatatcat 40506714  T
Q  307 tcggattctataattcaaactgcatagggcgcgcaagaaactcatatggtgggaaaagaagc 368  Q
    || || || |||||   ||| | ||| ||||||  ||||||| |||||||||||||||||||    
T  40506715 tcagagtccataatcggaaccgtataaggcgcgtgagaaacttatatggtgggaaaagaagc 40506776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 225 - 334
Target Start/End: Original strand, 39555877 - 39555984
Alignment:
Q  225 tttctcgcgcgtcctatttggattttaaaatccgaaatatttcaatgtgtttttagaaatttttatggggtgtttatgccgttcggattctataattcaa 324  Q
    ||||||||||||||| ||  |||||||||||| ||||| |||||| |||||||| || |||||||| |||||||||||  ||| ||||| ||||||||||    
T  39555877 tttctcgcgcgtcctgttcagattttaaaatctgaaatgtttcaacgtgttttt-gagatttttatagggtgtttatgttgtt-ggattatataattcaa 39555974  T
Q  325 actgcatagg 334  Q
    ||||||||||    
T  39555975 actgcatagg 39555984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 218 - 370
Target Start/End: Original strand, 13818755 - 13818906
Alignment:
Q  218 ctatgagtttctcgcgcgtcctatttggattttaaaatccgaaatatttcaatgtgtttttagaaatttttatggggtgtttatgccgttcggattctat 317  Q
    |||||||||||| || ||  |||||||||||||||||| | ||||||||||| |||||||  |   ||| |||||||||||||||  ||| |||||||||    
T  13818755 ctatgagtttcttgcacgatctatttggattttaaaattcaaaatatttcaacgtgttttg-gtggtttatatggggtgtttatgaagtttggattctat 13818853  T
Q  318 aattcaaactgcatagggcgcgcaagaaactcatatggtgggaaaagaagcag 370  Q
    ||| | |||| |||||  ||||| ||||||||||||  |||| ||||||||||    
T  13818854 aatccgaactacatagaacgcgcgagaaactcatataatggggaaagaagcag 13818906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 204 - 366
Target Start/End: Complemental strand, 6030150 - 6029989
Alignment:
Q  204 ttactttttccatcctatgagtttctcgcgcgtcctatttggattttaaaatccgaaatatttcaatgtgtttttagaaatttttatggggtgtttatgc 303  Q
    |||||||||| | | ||| ||||| | |||||||||||||| ||||||||| || ||||||||||| |||||||| | || |||||||   | |||||||    
T  6030150 ttactttttctaccatataagttttttgcgcgtcctatttgaattttaaaagccaaaatatttcaacgtgttttt-ggaagttttatgaaatttttatgc 6030052  T
Q  304 cgttcggattctataattcaaactgcatagggcgcgcaagaaactcatatggtgggaaaagaa 366  Q
     |||| ||||||| ||||  ||||||||||||| ||| |||| ||||||  ||| ||||||||    
T  6030051 agttcagattctaaaatttcaactgcatagggcacgcgagaacctcataacgtgagaaaagaa 6029989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 219 - 377
Target Start/End: Complemental strand, 31078881 - 31078724
Alignment:
Q  219 tatgagtttctcgcgcgtcctatttggattttaaaatccgaaatatttcaatgtgtttttagaaatttttatggggtgtttatgccgttcggattctata 318  Q
    |||||||||||||||| ||||||||||  | ||||||  ||||| ||| || |||||||  |||||||||||||  | |||||||||||| ||||| ||     
T  31078881 tatgagtttctcgcgcatcctatttggtctctaaaatttgaaatgttttaacgtgttttg-gaaatttttatggaatatttatgccgttcagattcgatt 31078783  T
Q  319 attcaaactgcatagggcgcgcaagaaactcatatggtgggaaaagaagcagtctttaa 377  Q
    || |||| |||||||| ||||  ||||||||||| | ||  ||||||||| ||||||||    
T  31078782 atccaaattgcataggacgcgtgagaaactcataggatgaaaaaagaagcggtctttaa 31078724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 208 - 287
Target Start/End: Original strand, 39039706 - 39039785
Alignment:
Q  208 tttttccatcctatgagtttctcgcgcgtcctatttggattttaaaatccgaaatatttcaatgtgtttttagaaatttt 287  Q
    ||||| |||||||| || |||| ||||||||||||| |||| |||||||||||| ||||||| |||||||||||| ||||    
T  39039706 ttttttcatcctataagcttcttgcgcgtcctatttagattctaaaatccgaaacatttcaacgtgtttttagaagtttt 39039785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 245 - 333
Target Start/End: Complemental strand, 4656650 - 4656562
Alignment:
Q  245 gattttaaaatccgaaatatttcaatgtgtttttagaaatttttatggggtgtttatgccgttcggattctataattcaaactgcatag 333  Q
    ||||||| |||| ||||| ||| |||||||||||| |  ||||||||  || |||||| ||||||||||||||||| ||||||||||||    
T  4656650 gattttagaatctgaaatgttttaatgtgtttttaaaggtttttatgatgtatttatgtcgttcggattctataatccaaactgcatag 4656562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 223 - 352
Target Start/End: Original strand, 7685447 - 7685574
Alignment:
Q  223 agtttctcgcgcgtcctatttggattttaaaatccgaaatatttcaatgtgtttttagaaatttttatggggtgtttatgccgttcggattctataattc 322  Q
    |||||||||| | ||||||||  ||||||||||| |||||||||||| || ||||  |||| |||||||| || ||||||| ||||||||| || |||      
T  7685447 agtttctcgcacatcctatttaaattttaaaatctgaaatatttcaacgtatttt--gaaagttttatggagtttttatgcggttcggattataaaatct 7685544  T
Q  323 aaactgcatagggcgcgcaagaaactcata 352  Q
     |||||||||| |||||  |||| ||||||    
T  7685545 gaactgcatagagcgcgtgagaagctcata 7685574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 220 - 320
Target Start/End: Original strand, 40899641 - 40899739
Alignment:
Q  220 atgagtttctcgcgcgtcctatttggattttaaaatccgaaatatttcaatgtgtttttagaaatttttatggggtgtttatgccgttcggattctataa 319  Q
    |||||||| ||||||  ||||||  |||||||||||| ||||||||| || ||||||||  |  ||||||||||||||||||||| |||| ||| |||||    
T  40899641 atgagtttttcgcgc--cctattcagattttaaaatctgaaatattttaacgtgtttttgaaggtttttatggggtgtttatgcctttcgaattttataa 40899738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 246 - 374
Target Start/End: Original strand, 7632694 - 7632822
Alignment:
Q  246 attttaaaatccgaaatatttcaatgtgtttttagaaatttttatggggtgtttatgccgttcggattctataattcaaactgcatagggcgcgcaagaa 345  Q
    ||||||||||  |||||||||||| || |||||  |  ||||||| ||||||||||| ||||| ||||||||||||| || |||||| | ||  | | ||    
T  7632694 attttaaaatttgaaatatttcaacgtatttttgaaggtttttatcgggtgtttatgtcgttcagattctataattcgaattgcatatgacgtacgaaaa 7632793  T
Q  346 actcatatggtgggaaaagaagcagtctt 374  Q
    ||| ||| | ||| |||||||||||||||    
T  7632794 acttataggatggaaaaagaagcagtctt 7632822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 598 - 662
Target Start/End: Complemental strand, 40064010 - 40063946
Alignment:
Q  598 ccgacacgacgtctatgattacagtgaatcacgtcatattctcaaattattatccgtgtcggtgt 662  Q
    ||||||||||| ||||||||||| ||||| | ||||| |||||||||||||||  ||||||||||    
T  40064010 ccgacacgacgcctatgattacaatgaattatgtcattttctcaaattattattggtgtcggtgt 40063946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 299
Target Start/End: Complemental strand, 9748403 - 9748309
Alignment:
Q  204 ttactttttccatcctatgagtttctcgcgcgtcctatttggattttaaaatccgaaatatttcaatgtgtttttagaaatttttatggggtgttt 299  Q
    |||||||||||| |||||||| ||||| || | |||||| ||||| |||||||| ||| | || || |||||||| || |||||||||| ||||||    
T  9748403 ttactttttccaccctatgagcttctcccgtgccctattcggattctaaaatccaaaaaaatttaacgtgttttt-gagatttttatggagtgttt 9748309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 540 - 660
Target Start/End: Original strand, 35431080 - 35431202
Alignment:
Q  540 ctatgaagtacaaacactccttgaattaggggtgttctggtgtcggacatt--tcggtgcccgacacgacgtctatgattacagtgaatcacgtcatatt 637  Q
    |||||||| ||| |||||  ||| ||||||||||| ||||||| ||| ||   ||| || ||||||||||  ||||||||||| | ||  | ||||| ||    
T  35431080 ctatgaagcacagacactttttggattaggggtgtcctggtgttggatatgcatcgatgtccgacacgacacctatgattacactaaaatatgtcatttt 35431179  T
Q  638 ctcaaattattatccgtgtcggt 660  Q
    ||||||||||||||||| |||||    
T  35431180 ctcaaattattatccgtttcggt 35431202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 601 - 671
Target Start/End: Complemental strand, 3658203 - 3658133
Alignment:
Q  601 acacgacgtctatgattacagtgaatcacgtcatattctcaaattattatccgtgtcggtgtatcggtgtc 671  Q
    |||||||  ||||||||||| ||||  || | || ||||||||||||||||||||||| ||| ||||||||    
T  3658203 acacgacacctatgattacactgaactacattattttctcaaattattatccgtgtcgatgtgtcggtgtc 3658133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 330 - 364
Target Start/End: Complemental strand, 37507572 - 37507538
Alignment:
Q  330 atagggcgcgcaagaaactcatatggtgggaaaag 364  Q
    ||||||||||||||||||||||| |||||||||||    
T  37507572 atagggcgcgcaagaaactcatagggtgggaaaag 37507538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 234 - 332
Target Start/End: Original strand, 42183685 - 42183784
Alignment:
Q  234 cgtcctatttggattttaaaatccgaaatat--ttcaatgtgtttttagaaatttttatggggtgtttatgccgttcggattctataattcaaactgcat 331  Q
    ||||| |||| |||| |||||| ||||||||  ||||| |||||||| |||| ||||||||  | ||||||  |||||||||||| ||||| ||||||||    
T  42183685 cgtcccatttagattctaaaatgcgaaatatatttcaacgtgttttt-gaaaattttatggattttttatggagttcggattctaaaattcgaactgcat 42183783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 206 - 287
Target Start/End: Original strand, 44173147 - 44173228
Alignment:
Q  206 actttttccatcctatgagtttctcgcgcgtcctatttggattttaaaatccgaaatatttcaatgtgtttttagaaatttt 287  Q
    |||||||||||| ||| |  |||||||||| ||||||  |||| ||||||| |||||||||||| || ||||| || |||||    
T  44173147 actttttccatcttataaaattctcgcgcgccctattcagattctaaaatcagaaatatttcaacgtatttttggagatttt 44173228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 217 - 313
Target Start/End: Complemental strand, 8757282 - 8757187
Alignment:
Q  217 cctatgagtttctcgcgcgtcctatttggattttaaaatccgaaatatttcaatgtgtttttagaaatttttatggggtgtttatgccgttcggatt 313  Q
    |||||||||||||||| |  | |||||||| | |||||||| |||| |||| ||||| |||| ||  |||||||||||| || |||||||| |||||    
T  8757282 cctatgagtttctcgccctccttatttggagtctaaaatccaaaatgtttccatgtg-ttttcgaggtttttatggggtattaatgccgtttggatt 8757187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 208 - 264
Target Start/End: Complemental strand, 38327405 - 38327349
Alignment:
Q  208 tttttccatcctatgagtttctcgcgcgtcctatttggattttaaaatccgaaatat 264  Q
    |||| |||||||| ||| ||||||  ||||||||| |||||| ||||||||||||||    
T  38327405 ttttcccatcctacgagcttctcggacgtcctattcggatttaaaaatccgaaatat 38327349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 591 - 675
Target Start/End: Complemental strand, 39820495 - 39820411
Alignment:
Q  591 tcggtgcccgacacgacgtctatgattacagtgaatcacgtcatattctcaaattattatccgtgtcggtgtatcggtgtctgtg 675  Q
    |||||| ||||||||||  ||||||||||| | ||| |  |||| ||||||||||||||| || ||| | || ||||||||||||    
T  39820495 tcggtgtccgacacgacacctatgattacactaaattatatcattttctcaaattattatacgggtcagcgtgtcggtgtctgtg 39820411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 5e-30; HSPs: 29)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 204 - 367
Target Start/End: Complemental strand, 29389274 - 29389112
Alignment:
Q  204 ttactttttccatcctatgagtttctcgcgcgtcctatttggattttaaaatccgaaatatttcaatgtgtttttagaaatttttatggggtgtttatgc 303  Q
    |||||||||||| ||||| | |||||||| || ||||||  |||||||||||||||||| |||||| ||||||||  |  ||||||| ||||||||||||    
T  29389274 ttactttttccaccctataa-tttctcgcacgccctattcagattttaaaatccgaaatgtttcaacgtgtttttgaaggtttttattgggtgtttatgc 29389176  T
Q  304 cgttcggattctataattcaaactgcatagggcgcgcaagaaactcatatggtgggaaaagaag 367  Q
     ||||||||| |||||| | ||||| ||||| || || ||||||||||| ||||||||||||||    
T  29389175 tgttcggattttataatccgaactgtataggacgtgcgagaaactcatagggtgggaaaagaag 29389112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 199 - 339
Target Start/End: Original strand, 9929288 - 9929427
Alignment:
Q  199 ggctgttactttttccatcctatgagtttctcgcgcgtcctatttggattttaaaatccgaaatatttcaatgtgtttttagaaatttttatggggtgtt 298  Q
    |||| ||||||||| |||||||||||| | |||| | |||||||| |||||||||||| ||||| |||||| ||| |||| ||  |||||||| ||||||    
T  9929288 ggctattacttttttcatcctatgagtatgtcgcacctcctatttagattttaaaatctgaaatctttcaacgtg-ttttggaggtttttatgaggtgtt 9929386  T
Q  299 tatgccgttcggattctataattcaaactgcatagggcgcg 339  Q
    |||| |||||| |||||||||| | ||||||||||||||||    
T  9929387 tatgacgttcgaattctataatccgaactgcatagggcgcg 9929427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 253 - 369
Target Start/End: Complemental strand, 30525886 - 30525770
Alignment:
Q  253 aatccgaaatatttcaatgtgtttttagaaatttttatggggtgtttatgccgttcggattctataattcaaactgcatagggcgcgcaagaaactcata 352  Q
    |||||||||| |||||| |||||||| ||  |||||||| | |||||||||||||||||||||||||| |||| ||||||||||| || |||||||||||    
T  30525886 aatccgaaatgtttcaacgtgtttttggaggtttttatgagatgtttatgccgttcggattctataatccaaattgcatagggcgtgcgagaaactcata 30525787  T
Q  353 tggtgggaaaagaagca 369  Q
     |||| ||||| |||||    
T  30525786 gggtgcgaaaaaaagca 30525770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 215 - 371
Target Start/End: Complemental strand, 33240956 - 33240802
Alignment:
Q  215 atcctatgagtttctcgcgcgtcctatttggattttaaaatccgaaatatttcaatgtgtttttagaaatttttatggggtgtttatgccgttcggattc 314  Q
    ||||||||||||||||| ||| |||||| ||||| ||||||||||||||||||||   ||||||  |  |||||||||||| ||||| | ||||||||||    
T  33240956 atcctatgagtttctcgtgcgccctattcggattctaaaatccgaaatatttcaa--cgtttttgaaggtttttatggggtatttatacagttcggattc 33240859  T
Q  315 tataattcaaactgcatagggcgcgcaagaaactcatatggtgggaaaagaagcagt 371  Q
    || ||| ||||||| |||||||| || |||| || ||| | ||||||||||| ||||    
T  33240858 taaaatccaaactgtatagggcgtgcgagaagcttataggatgggaaaagaaacagt 33240802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 202 - 320
Target Start/End: Complemental strand, 29263927 - 29263809
Alignment:
Q  202 tgttactttttccatcctatgagtttctcgcgcgtcctatttggattttaaaatccgaaatatttcaatgtgtttttagaaatttttatggggtgtttat 301  Q
    |||||||||||| || ||| ||||||||||| |||| ||||  ||||||||||||  |||| |||||||||||||||  | |||||||| ||||||||||    
T  29263927 tgttactttttctattctacgagtttctcgcacgtcttattcagattttaaaatcgaaaatgtttcaatgtgtttttgaagatttttattgggtgtttat 29263828  T
Q  302 gccgttcggattctataat 320  Q
    | ||||| |||||||||||    
T  29263827 gtcgttcagattctataat 29263809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 204 - 316
Target Start/End: Complemental strand, 6978597 - 6978485
Alignment:
Q  204 ttactttttccatcctatgagtttctcgcgcgtcctatttggattttaaaatccgaaatatttcaatgtgtttttagaaatttttatggggtgtttatgc 303  Q
    |||||||||||||||||||||||||||| |||||||||||||||| |||||||  ||||||||||| ||  |||| | |  |||||||| || |||||||    
T  6978597 ttactttttccatcctatgagtttctcgtgcgtcctatttggattctaaaatctaaaatatttcaacgtaatttttggaggttttatggagtttttatgc 6978498  T
Q  304 cgttcggattcta 316  Q
     ||| ||||||||    
T  6978497 agtttggattcta 6978485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 219 - 366
Target Start/End: Complemental strand, 6355811 - 6355661
Alignment:
Q  219 tatgagtttctcgcgcgtcctatttggattttaaaatccgaaatatttcaatgtgtttttagaaatttttatgggg---tgtttatgccgttcggattct 315  Q
    ||||||||||||| | |||||||||| |||||||||||  |||||||||||||| ||||||||  |||||||| ||   | |||||||||||  |||| |    
T  6355811 tatgagtttctcgtgtgtcctatttgaattttaaaatctaaaatatttcaatgtatttttagatgtttttatgaggtattatttatgccgtttagatttt 6355712  T
Q  316 ataattcaaactgcatagggcgcgcaagaaactcatatggtgggaaaagaa 366  Q
    |||||| ||||  ||||   ||||||||||||| |||| ||| ||||||||    
T  6355711 ataatttaaacgacataaaacgcgcaagaaacttatatagtgagaaaagaa 6355661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 238 - 365
Target Start/End: Original strand, 33192022 - 33192150
Alignment:
Q  238 ctatttggattttaaaatccgaaatatttcaatgtgtttttagaa-atttttatggggtgtttatgccgttcggattctataattcaaactgcatagggc 336  Q
    |||||| ||||||||||||||||||||||||| ||  |||| ||| |||||||||  |||||||||||||||||||| |||||| | ||||||||| |      
T  33192022 ctatttagattttaaaatccgaaatatttcaacgtaatttttgaagatttttatgaagtgtttatgccgttcggattttataatccgaactgcataagag 33192121  T
Q  337 gcgcaagaaactcatatggtgggaaaaga 365  Q
    |||| ||||||| ||| | || |||||||    
T  33192122 gcgcgagaaactaataggatgagaaaaga 33192150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 215 - 374
Target Start/End: Original strand, 33450813 - 33450973
Alignment:
Q  215 atcctatgagtttctcgcgcgtcctatttggattttaaaatccgaaatatttcaatgtgtttttagaaatttttatggggtgtttatgccgttcggat-t 313  Q
    |||||||||| |||| |||||||||||| ||||| |||||| ||||||||||||| |||||||| ||   ||||| | ||||||||||  ||||||||      
T  33450813 atcctatgagcttcttgcgcgtcctattcggattctaaaattcgaaatatttcaacgtgtttttggaggcttttaggaggtgtttatgttgttcggatac 33450912  T
Q  314 ctataattcaaactgcatagggcgcgcaagaaactcatatggtgggaaaagaagcagtctt 374  Q
    ||||| | | ||||| ||| |  |||||||||||||||| ||| | ||||||| |||||||    
T  33450913 ctatactccgaactgtataagatgcgcaagaaactcataaggtagaaaaagaaacagtctt 33450973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 204 - 278
Target Start/End: Original strand, 7591055 - 7591129
Alignment:
Q  204 ttactttttccatcctatgagtttctcgcgcgtcctatttggattttaaaatccgaaatatttcaatgtgttttt 278  Q
    |||||||| ||||||||||| |||| |||||||||||||  |||| |||||||||||||||||||| ||||||||    
T  7591055 ttacttttcccatcctatgaatttcccgcgcgtcctattaagattctaaaatccgaaatatttcaacgtgttttt 7591129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 219 - 352
Target Start/End: Complemental strand, 31596628 - 31596495
Alignment:
Q  219 tatgagtttctcgcgcgtcctatttggattttaaaatccgaaatatttcaatgtgtttttagaaatttttatggggtgtttatgccgttcggattctata 318  Q
    ||||||||||| | ||| |||||| | ||||||||||| ||||| |||||| |||||||| ||   |||||| |||||||||||||||||  |||||| |    
T  31596628 tatgagtttcttgtgcgccctattcgaattttaaaatctgaaatgtttcaacgtgtttttggaggattttattgggtgtttatgccgttcaaattctaca 31596529  T
Q  319 attcaaactgcatagggcgcgcaagaaactcata 352  Q
    ||  |||||| ||||| ||||| | |||||||||    
T  31596528 atctaaactgtataggacgcgcgaaaaactcata 31596495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 204 - 335
Target Start/End: Original strand, 989485 - 989615
Alignment:
Q  204 ttactttttccatcctatgagtttctcgcgcgtcctatttggattttaaaatccgaaatatttcaatgtgtttttagaaatttttatggggtgtttatgc 303  Q
    |||||||||| |||  ||||| ||||||| || ||||||  || | ||||||| |||||||||||| |||||||| || | ||||||||||  |||||||    
T  989485 ttactttttctatctcatgagcttctcgcacgccctattcagaatctaaaatctgaaatatttcaacgtgtttttggaga-ttttatgggggttttatgc 989583  T
Q  304 cgttcggattctataattcaaactgcataggg 335  Q
     |||||||||||| ||| | |||| |||||||    
T  989584 agttcggattctaaaatccgaactacataggg 989615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 204 - 278
Target Start/End: Complemental strand, 6890667 - 6890593
Alignment:
Q  204 ttactttttccatcctatgagtttctcgcgcgtcctatttggattttaaaatccgaaatatttcaatgtgttttt 278  Q
    |||||||||| ||  || ||| ||||||| | |||||||||||||| |||||| |||||||||||||||||||||    
T  6890667 ttactttttctatgttaggagcttctcgcacttcctatttggatttcaaaatctgaaatatttcaatgtgttttt 6890593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 229 - 367
Target Start/End: Original strand, 14713844 - 14713981
Alignment:
Q  229 tcgcgcgtcctatttggattttaaaatccgaaatatttcaatgtgtttttagaaatttttatggggtgtttatgccgttcggattctataattcaaactg 328  Q
    ||||||||||||||| |||| |||  ||| |||||||| ||  || ||||  || ||||||||||   ||||||  |||||||||||||||| |||||||    
T  14713844 tcgcgcgtcctatttagattataat-tccaaaatattttaacttgcttttgaaagtttttatgggacatttatgttgttcggattctataatccaaactg 14713942  T
Q  329 catagggcgcgcaagaaactcatatggtgggaaaagaag 367  Q
    ||||| ||  |||||||||||||| | ||| ||||||||    
T  14713943 catagagcaagcaagaaactcataggatggaaaaagaag 14713981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 204 - 278
Target Start/End: Complemental strand, 32826796 - 32826722
Alignment:
Q  204 ttactttttccatcctatgagtttctcgcgcgtcctatttggattttaaaatccgaaatatttcaatgtgttttt 278  Q
    ||||||||||||| ||||||||||||||||||| ||||||| ||| ||||||   ||||||||||| | ||||||    
T  32826796 ttactttttccattctatgagtttctcgcgcgttctatttgaattctaaaattttaaatatttcaacgagttttt 32826722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 224 - 281
Target Start/End: Complemental strand, 13214257 - 13214200
Alignment:
Q  224 gtttctcgcgcgtcctatttggattttaaaatccgaaatatttcaatgtgtttttaga 281  Q
    |||| |||||| |||||||  ||||||||||||||||||||||||| |||||||||||    
T  13214257 gtttgtcgcgcatcctattcagattttaaaatccgaaatatttcaacgtgtttttaga 13214200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 201 - 352
Target Start/End: Original strand, 3049725 - 3049876
Alignment:
Q  201 ctgttactttttccatcctatgagtttctcgcgcgtcctatttggattttaaaatccgaaatatttcaatgtgtttttagaaatttttatggggtgttta 300  Q
    |||||| ||||  |||||||||||||| |||| |||| ||||   |||||||||| | || | ||| || ||||||||    ||||||||||| ||||||    
T  3049725 ctgttatttttctcatcctatgagtttttcgcacgtcatattcaaattttaaaattcaaatttttttaacgtgtttttgatgatttttatgggttgttta 3049824  T
Q  301 tgccgttcggattctataattcaaactgcatagggcgcgcaagaaactcata 352  Q
    | |||||  ||||||||||||| || |||||| | | ||| |||||||||||    
T  3049825 taccgttaagattctataattcgaaatgcataagacacgcgagaaactcata 3049876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 203 - 350
Target Start/End: Complemental strand, 9540644 - 9540498
Alignment:
Q  203 gttactttttccatcctatgagtttctcgcgcgtcctatttggattttaaaatccgaaatatttcaatgtgtttttagaaatttttatggggtgtttatg 302  Q
    |||||||||  ||||||||||||||||| |||| ||||||  |||| ||||||| ||||||| | |  || |||| |   ||||| || |||||||||||    
T  9540644 gttacttttctcatcctatgagtttctcacgcgccctattcagattctaaaatctgaaatatcttaccgttttttgaaggatttt-atagggtgtttatg 9540546  T
Q  303 ccgttcggattctataattcaaactgcatagggcgcgcaagaaactca 350  Q
     | |||  ||| ||||||| ||||||||||||  ||||||||||||||    
T  9540545 tcattcaaattttataatttaaactgcataggaagcgcaagaaactca 9540498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 598 - 657
Target Start/End: Complemental strand, 34446624 - 34446565
Alignment:
Q  598 ccgacacgacgtctatgattacagtgaatcacgtcatattctcaaattattatccgtgtc 657  Q
    ||||||||||  ||||||||||| ||||| | ||||| ||||||||||||||||||||||    
T  34446624 ccgacacgacacctatgattacactgaattatgtcattttctcaaattattatccgtgtc 34446565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 239 - 352
Target Start/End: Complemental strand, 2119312 - 2119199
Alignment:
Q  239 tatttggattttaaaatccgaaatatttcaatgtgtttttagaaatttttatggggtgtttatgccgttcggattctataattcaaactgcatagggcgc 338  Q
    |||| ||||| || |||||||||||||| || ||||||||  | |||||||||   |||||||| | |||| |||| ||||| ||||||||||||  |      
T  2119312 tattcggattctacaatccgaaatattttaacgtgtttttgaagatttttatgaaatgtttatgtctttcgaattccataatccaaactgcatagaacat 2119213  T
Q  339 gcaagaaactcata 352  Q
    ||||||||||||||    
T  2119212 gcaagaaactcata 2119199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 357
Target Start/End: Complemental strand, 6542102 - 6541953
Alignment:
Q  204 ttactttttccatcctatgagtttctcgcgcgtcctatttggattttaaaatccgaaatatttcaatgtgtttttagaaatttttatggggtgtttatgc 303  Q
    |||||||||| | | ||||||||||||| | ||||||||  |||| |||||| | |||||||| || ||| |||| |||  |||||||| || |||||      
T  6542102 ttactttttcaaccgtatgagtttctcgtgtgtcctattcagattctaaaattcaaaatattttaacgtgctttt-gaagattttatggagtatttat-- 6542006  T
Q  304 cgttcggattctataattcaaactgcatagggcgcgcaagaaactcatatggtg 357  Q
     ||||||||| |||||| | |||| |||| ||||||| ||||||| ||| ||||    
T  6542005 -gttcggattttataatccgaactacataaggcgcgcgagaaactgatagggtg 6541953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 219 - 278
Target Start/End: Complemental strand, 9330314 - 9330255
Alignment:
Q  219 tatgagtttctcgcgcgtcctatttggattttaaaatccgaaatatttcaatgtgttttt 278  Q
    |||||||||||||||||  ||||| | ||  | |||||||||||||||||||||||||||    
T  9330314 tatgagtttctcgcgcgctctattcgaatgctgaaatccgaaatatttcaatgtgttttt 9330255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 225 - 304
Target Start/End: Complemental strand, 21871767 - 21871688
Alignment:
Q  225 tttctcgcgcgtcctatttggattttaaaatccgaaatatttcaatgtgtttttagaaatttttatggggtgtttatgcc 304  Q
    ||||| ||||||| |||||||||| || |||||||||| |||||  |||||||| ||  ||||||  |||||||||||||    
T  21871767 tttctagcgcgtcttatttggattctagaatccgaaatgtttcatagtgtttttggaggtttttactgggtgtttatgcc 21871688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 591 - 657
Target Start/End: Original strand, 12235512 - 12235578
Alignment:
Q  591 tcggtgcccgacacgacgtctatgattacagtgaatcacgtcatattctcaaattattatccgtgtc 657  Q
    |||||| | ||||||||  ||||||||||| ||||| | ||||| ||||| ||||||||||||||||    
T  12235512 tcggtgtcggacacgacacctatgattacactgaattatgtcattttctctaattattatccgtgtc 12235578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 245 - 362
Target Start/End: Original strand, 6359041 - 6359158
Alignment:
Q  245 gattttaaaatccgaaatatttcaatgtgtttttagaaatttttatggggtgtttatgccgttcggattctataattcaaactgcatagggcgcgcaaga 344  Q
    |||| |||||||| ||||||||||| || ||||| ||  ||||||||| ||||| ||| | || | ||||||||||   ||||||||| ||| | | |||    
T  6359041 gattctaaaatccaaaatatttcaacgtatttttggatgtttttatggagtgttaatgtcatttgaattctataatctgaactgcataaggcacacgaga 6359140  T
Q  345 aactcatatggtgggaaa 362  Q
    |||||||| | |||||||    
T  6359141 aactcataagatgggaaa 6359158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 598 - 659
Target Start/End: Complemental strand, 6389802 - 6389741
Alignment:
Q  598 ccgacacgacgtctatgattacagtgaatcacgtcatattctcaaattattatccgtgtcgg 659  Q
    ||||||||||  ||||||||||| | ||| |  |||| ||||||||||||||||||||||||    
T  6389802 ccgacacgacacctatgattacactaaattatatcattttctcaaattattatccgtgtcgg 6389741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 631 - 675
Target Start/End: Complemental strand, 7625148 - 7625104
Alignment:
Q  631 tcatattctcaaattattatccgtgtcggtgtatcggtgtctgtg 675  Q
    |||| |||||||||||||||||||||||  || ||||||||||||    
T  7625148 tcattttctcaaattattatccgtgtcgacgtgtcggtgtctgtg 7625104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 598 - 658
Target Start/End: Original strand, 12086345 - 12086405
Alignment:
Q  598 ccgacacgacgtctatgattacagtgaatcacgtcatattctcaaattattatccgtgtcg 658  Q
    ||||||||||  ||||||||| | ||||| | |||||  ||||||||||||||||||||||    
T  12086345 ccgacacgacacctatgattaaactgaattatgtcattatctcaaattattatccgtgtcg 12086405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 204 - 367
Target Start/End: Original strand, 34948975 - 34949138
Alignment:
Q  204 ttactttttccatcctatgagtttctcgcgcgtcctatttggattttaaaatccgaaatatttcaatgtgtttttagaaatttttatggggtgtttatgc 303  Q
    |||||||||||| | ||||||||| || || |  || ||  |||| |||||| |||||||||| ||| ||||||  |||  |||||| ||||||||||||    
T  34948975 ttactttttccaccttatgagtttttcacgtgctctgttctgattctaaaatacgaaatatttgaatatgttttg-gaagattttatagggtgtttatgc 34949073  T
Q  304 cgttcggattctataattcaaactgcatagggcgcgcaagaaactc-atatggtgggaaaagaag 367  Q
    | || | ||| ||||||  ||||||||||| | || | ||||| || ||| ||||||||||||||    
T  34949074 catttgaattatataatctaaactgcatagagtgcacgagaaattcaatagggtgggaaaagaag 34949138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 8e-29; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 223 - 368
Target Start/End: Original strand, 22017627 - 22017770
Alignment:
Q  223 agtttctcgcgcgtcctatttggattttaaaatccgaaatatttcaatgtgtttttagaaatttttatggggtgtttatgccgttcggattctataattc 322  Q
    |||||||| |||||| | || |||||| |||||| ||||| |||||| | |||||| ||  ||||||||||||||||||||| ||||||||||||||| |    
T  22017627 agtttctcacgcgtcttgttcggattt-aaaatctgaaatgtttcaacgcgtttttggaggtttttatggggtgtttatgccattcggattctataatcc 22017725  T
Q  323 aaactgcatagggcgcgcaagaaactcatatggtgggaaaagaagc 368  Q
     ||||||||||| || |||||||||||||| |||||||||||||||    
T  22017726 gaactgcataggacgtgcaagaaactcata-ggtgggaaaagaagc 22017770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 220 - 334
Target Start/End: Original strand, 17223081 - 17223195
Alignment:
Q  220 atgagtttctcgcgcgtcctatttggattttaaaatccgaaatatttcaatgtgtttttagaaatttttatggggtgtttatgccgttcggattctataa 319  Q
    ||||||||||| |||| | ||||| |||| ||||||| |||||||||||| ||||||||  |  |||||||| ||||| ||| | |||||||||||||||    
T  17223081 atgagtttctcacgcgccttatttagattctaaaatctgaaatatttcaacgtgtttttgcaggtttttatgaggtgtgtatactgttcggattctataa 17223180  T
Q  320 ttcaaactgcatagg 334  Q
    |||||||||||||||    
T  17223181 ttcaaactgcatagg 17223195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 237 - 350
Target Start/End: Original strand, 40491706 - 40491819
Alignment:
Q  237 cctatttggattttaaaatccgaaatatttcaatgtgtttttagaaatttttatggggtgtttatgccgttcggattctataattcaaactgcatagggc 336  Q
    |||||||||||| |||||||| |||| |||||| |||||||| ||  |||||||| |||||||||||||||  ||||||||||| ||||||   ||||||    
T  40491706 cctatttggattctaaaatccaaaatgtttcaacgtgtttttggaggtttttatgaggtgtttatgccgtttagattctataatccaaactatgtagggc 40491805  T
Q  337 gcgcaagaaactca 350  Q
     ||| |||||||||    
T  40491806 acgcgagaaactca 40491819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 204 - 278
Target Start/End: Complemental strand, 13271561 - 13271487
Alignment:
Q  204 ttactttttccatcctatgagtttctcgcgcgtcctatttggattttaaaatccgaaatatttcaatgtgttttt 278  Q
    |||||||||||| | ||| |||||||||||||||||||||| ||| ||||||| |||||||||||| ||||||||    
T  13271561 ttactttttccaccatattagtttctcgcgcgtcctatttgaattctaaaatctgaaatatttcaacgtgttttt 13271487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 211 - 366
Target Start/End: Complemental strand, 28503349 - 28503196
Alignment:
Q  211 ttccatcctatgagtttctcgcgcgtcctatttggattttaaaatccgaaatatttcaatgtgtttttagaaatttttatggggtgtttatgccgttcgg 310  Q
    |||||||||||||||||||||||   | |||| | ||| ||||||| |||||||||||| || ||||  ||  ||||||||| || |||||||||||||     
T  28503349 ttccatcctatgagtttctcgcgac-cttattcgaattctaaaatctgaaatatttcaacgtattttg-gaggtttttatggagtatttatgccgttcga 28503252  T
Q  311 attctataattcaaactgcatagggcgcgcaagaaactcatatggtgggaaaagaa 366  Q
    ||| |||||| ||||||||||||| ||||  | ||||||||| | ||| |||||||    
T  28503251 attttataatccaaactgcataggacgcgtgaaaaactcataggatggaaaaagaa 28503196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 214 - 328
Target Start/End: Complemental strand, 7765313 - 7765200
Alignment:
Q  214 catcctatgagtttctcgcgcgtcctatttggattttaaaatccgaaatatttcaatgtgtttttagaaatttttatggggtgtttatgccgttcggatt 313  Q
    |||||||||||||| | | ||||| ||||   |||||||||||||||||||||||| |||||||| || |||||||| |  ||||||| | |||| ||||    
T  7765313 catcctatgagttttttgtgcgtcttattcaaattttaaaatccgaaatatttcaacgtgttttt-gatatttttattgaatgtttatacagttcagatt 7765215  T
Q  314 ctataattcaaactg 328  Q
    |||||||||| ||||    
T  7765214 ctataattcatactg 7765200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 204 - 366
Target Start/End: Original strand, 14872590 - 14872751
Alignment:
Q  204 ttactttttccatcctatgagtttctcgcgcgtcctatttggattttaaaatccgaaatatttcaatgtgtttttagaaatttttatggggtgtttatgc 303  Q
    |||||||| ||| ||||| || |||||| |||  || |||  ||| |||||||| ||||||||||| |||||||||||  |||| || |||| |||||      
T  14872590 ttacttttcccaccctattaggttctcgtgcgctctgtttaaattctaaaatccaaaatatttcaacgtgtttttagaggtttt-atagggtttttatat 14872688  T
Q  304 cgttcggattctataattcaaactgcatagggcgcgcaagaaactcatatggtgggaaaagaa 366  Q
     |||||||||||| ||| |||| ||||||||||||  || ||| ||||| |||||||||||||    
T  14872689 agttcggattctaaaatccaaattgcatagggcgcagaaaaaaatcatagggtgggaaaagaa 14872751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 600 - 673
Target Start/End: Original strand, 18607099 - 18607172
Alignment:
Q  600 gacacgacgtctatgattacagtgaatcacgtcatattctcaaattattatccgtgtcggtgtatcggtgtctg 673  Q
    ||||||||  ||||||||||| ||||| | || || ||||||||||||||||| ||||||||||||||||||||    
T  18607099 gacacgacacctatgattacattgaattatgttattttctcaaattattatccatgtcggtgtatcggtgtctg 18607172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 204 - 369
Target Start/End: Complemental strand, 22023865 - 22023700
Alignment:
Q  204 ttactttttccatcctatgagtttctcgcgcgtcctatttggattttaaaatccgaaatatttcaatgtgtttttagaaatttttatggggtgtttatgc 303  Q
    ||||||||||||  |||||||||||| || |  ||||||   ||| | |||| | |||| ||||||  ||||||| ||  ||||||| ||||||||||||    
T  22023865 ttactttttccactctatgagtttcttgcacaccctattcatattctgaaattccaaatgtttcaacatgtttttggagctttttatagggtgtttatgc 22023766  T
Q  304 cgttcggattctataattcaaactgcatagggcgcgcaagaaactcatatggtgggaaaagaagca 369  Q
    |||| | |||||||||||| ||  ||||| ||||||| ||||||||| ||| ||  ||||||||||    
T  22023765 cgttggaattctataattcgaatagcatatggcgcgcgagaaactcacatgatgaaaaaagaagca 22023700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 198 - 303
Target Start/End: Original strand, 33043858 - 33043962
Alignment:
Q  198 aggctgttactttttccatcctatgagtttctcgcgcgtcctatttggattttaaaatccgaaatatttcaatgtgtttttagaaatttttatggggtgt 297  Q
    |||||||||||||||||||||||||||||||| || |  |||||||  ||| ||||||| ||||||||| || ||| ||||| ||  |||||||| ||||    
T  33043858 aggctgttactttttccatcctatgagtttcttgcacaccctatttaaattctaaaatctgaaatattttaacgtg-ttttaaaagattttatggagtgt 33043956  T
Q  298 ttatgc 303  Q
    ||||||    
T  33043957 ttatgc 33043962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 204 - 316
Target Start/End: Original strand, 35323601 - 35323712
Alignment:
Q  204 ttactttttccatcctatgagtttctcgcgcgtcctatttggattttaaaatccgaaatatttcaatgtgtttttagaaatttttatggggtgtttatgc 303  Q
    |||||||| ||| | |||||| |||||| ||||||||||  |||| |||||||||||||||||||| || ||||| |||  |||||  |||| |||||||    
T  35323601 ttacttttcccaccttatgagattctcgtgcgtcctattcagattctaaaatccgaaatatttcaacgtattttt-gaaggttttacagggtttttatgc 35323699  T
Q  304 cgttcggattcta 316  Q
     ||||||||||||    
T  35323700 agttcggattcta 35323712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 204 - 302
Target Start/End: Original strand, 8217104 - 8217200
Alignment:
Q  204 ttactttttccatcctatgagtttctcgcgcgtcctatttggattttaaaatccgaaatatttcaatgtgtttttagaaatttttatggggtgtttatg 302  Q
    |||||||| ||| |||| |||||||||||||| ||||||   ||| ||||||| ||||| ||| || |||||||| || ||||||||||||||||||||    
T  8217104 ttacttttccca-cctacgagtttctcgcgcgccctattcaaattctaaaatctgaaatgttttaacgtgttttt-gagatttttatggggtgtttatg 8217200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 286 - 367
Target Start/End: Original strand, 19972372 - 19972454
Alignment:
Q  286 tttatggggtgtttatgccgttcggattctataattcaaactgcatagggcgcgcaagaaactc-atatggtgggaaaagaag 367  Q
    ||||| || |||||||| ||||||||||||||||||| |||| |||||  ||| | |||||||| ||| ||||||||||||||    
T  19972372 tttataggatgtttatggcgttcggattctataattcgaacttcatagaacgcacgagaaactcaatagggtgggaaaagaag 19972454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 234 - 300
Target Start/End: Original strand, 39965301 - 39965367
Alignment:
Q  234 cgtcctatttggattttaaaatccgaaatatttcaatgtgtttttagaaatttttatggggtgttta 300  Q
    |||||||||  ||||||||||| |||||||||| ||| |||||||||| |||||||| | |||||||    
T  39965301 cgtcctattcagattttaaaattcgaaatattttaatatgtttttagagatttttatagagtgttta 39965367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 198 - 267
Target Start/End: Original strand, 21039231 - 21039300
Alignment:
Q  198 aggctgttactttttccatcctatgagtttctcgcgcgtcctatttggattttaaaatccgaaatatttc 267  Q
    ||||| ||| |||| ||| ||||  ||||||||| ||||||||||  |||||||||||||||||||||||    
T  21039231 aggctattatttttcccaccctacaagtttctcgtgcgtcctattcagattttaaaatccgaaatatttc 21039300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 219 - 367
Target Start/End: Complemental strand, 27707287 - 27707139
Alignment:
Q  219 tatgagtttctcgcgcgtcctattt-ggattttaaaatccgaaatatttcaatgtgtttttagaaatttttatggggtgtttatgccgttcggattctat 317  Q
    |||||||||||||| |  ||||||| |||||  ||||| ||| |||||| ||  ||||||  |||||||||||||| |||||||  | ||||||||||||    
T  27707287 tatgagtttctcgcacaccctattttggattcaaaaattcgatatattttaacatgttttg-gaaatttttatgggatgtttatatcattcggattctat 27707189  T
Q  318 aattcaaactgcatagggcgcgcaagaaactcatatggtgggaaaagaag 367  Q
    ||| ||||||| ||| ||| | | ||||||| ||| | || |||||||||    
T  27707188 aatccaaactgtataaggcacacgagaaacttataggatgagaaaagaag 27707139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 536 - 588
Target Start/End: Complemental strand, 27932358 - 27932306
Alignment:
Q  536 tgtcctatgaagtacaaacactccttgaattaggggtgttctggtgtcggaca 588  Q
    |||||||||||| |||||||||||| |||||||| |||| |||||||| ||||    
T  27932358 tgtcctatgaagcacaaacactcctcgaattaggcgtgtcctggtgtccgaca 27932306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 221 - 269
Target Start/End: Complemental strand, 37928114 - 37928066
Alignment:
Q  221 tgagtttctcgcgcgtcctatttggattttaaaatccgaaatatttcaa 269  Q
    |||||||||||| ||||||||||||||| || ||| |||||||||||||    
T  37928114 tgagtttctcgcacgtcctatttggattctataatacgaaatatttcaa 37928066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 219 - 339
Target Start/End: Original strand, 41149519 - 41149638
Alignment:
Q  219 tatgagtttctcgcgcgtcctatttggattttaaaatccgaaatatttcaatgtgtttttagaaatttttatggggtgtttatgccgttcggattctata 318  Q
    |||||| |||||| | | |||||||| ||| |||||||| | ||||||||  |||||||| |||| ||||||||| | ||||||| ||||  |||||| |    
T  41149519 tatgagcttctcgtgtgccctatttgaattctaaaatccaacatatttcatcgtgttttt-gaaagttttatgggatttttatgcggttcaaattctaaa 41149617  T
Q  319 attcaaactgcatagggcgcg 339  Q
    || | || |||||||||||||    
T  41149618 atccgaattgcatagggcgcg 41149638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 203 - 266
Target Start/End: Original strand, 30632488 - 30632551
Alignment:
Q  203 gttactttttccatcctatgagtttctcgcgcgtcctatttggattttaaaatccgaaatattt 266  Q
    ||||||||||||||| | |||||||||||   | |||||| |||||||||||||| ||||||||    
T  30632488 gttactttttccatcttttgagtttctcgtttgccctattcggattttaaaatccaaaatattt 30632551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 269
Target Start/End: Original strand, 36183332 - 36183387
Alignment:
Q  214 catcctatgagtttctcgcgcgtcctatttggattttaaaatccgaaatatttcaa 269  Q
    |||||||||||||||||| ||| | |||| ||||| ||||||||||||| ||||||    
T  36183332 catcctatgagtttctcgtgcgccatattcggattctaaaatccgaaatgtttcaa 36183387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 630 - 676
Target Start/End: Original strand, 18288083 - 18288129
Alignment:
Q  630 gtcatattctcaaattattatccgtgtcggtgtatcggtgtctgtgc 676  Q
    ||||| |||||||||||||||||||||| | || |||||||||||||    
T  18288083 gtcattttctcaaattattatccgtgtcagcgtctcggtgtctgtgc 18288129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 204 - 278
Target Start/End: Complemental strand, 27549810 - 27549736
Alignment:
Q  204 ttactttttccatcctatgagtttctcgcgcgtcctatttggattttaaaatccgaaatatttcaatgtgttttt 278  Q
    ||||||||||| || |||||||||||||| | || ||||| |||| ||||||  ||||| |||||| ||||||||    
T  27549810 ttactttttccgtcatatgagtttctcgcacatcatatttagattctaaaatttgaaatgtttcaacgtgttttt 27549736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 204 - 373
Target Start/End: Original strand, 31859717 - 31859883
Alignment:
Q  204 ttactttttccatcctatgagtttctcgcgcgtcctatttggattttaaaatccgaaatatttcaatgtgtttttagaaatttttatggggtgtttatgc 303  Q
    |||||||| ||||| |||||| |||||| ||| |||||| ||| | |||||||||||||||| |||  | ||||| || | |||||||||  |||| |||    
T  31859717 ttacttttgccatcttatgagcttctcgtgcgccctattcggactctaaaatccgaaatattccaacttatttttggaga-ttttatggg--gtttttgc 31859813  T
Q  304 cgttcggattctataattcaaactgcatagggcgcgcaagaaactcatatggtgggaaaagaagcagtct 373  Q
     ||| |||||||| ||| | |||| |||| || |||  |||| |||||| ||||  ||||||| ||||||    
T  31859814 agtttggattctaaaatccgaactacatatggtgcgtgagaagctcatagggtgaaaaaagaaacagtct 31859883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 205 - 262
Target Start/End: Original strand, 3088242 - 3088299
Alignment:
Q  205 tactttttccatcctatgagtttctcgcgcgtcctatttggattttaaaatccgaaat 262  Q
    ||||||||||||||| ||||||||||| ||  ||| || ||||| |||||||||||||    
T  3088242 tactttttccatcctttgagtttctcgtgcaccctcttcggattctaaaatccgaaat 3088299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0071 (Bit Score: 65; Significance: 3e-28; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 202 - 370
Target Start/End: Complemental strand, 173 - 6
Alignment:
Q  202 tgttactttttccatcctatgagtttctcgcgcgtcctatttggattttaaaatccgaaatatttcaatgtgtttttagaaatttttatggggtgtttat 301  Q
    ||||| ||||| || ||||||||||| |||| |  | |||||  | ||||||||| ||||||||| || ||||||| |||  ||||||||||||||||||    
T  173 tgttatttttttcaccctatgagtttttcgcacaccttatttaaaatttaaaatctgaaatatttaaacgtgtttt-agaggtttttatggggtgtttat 75  T
Q  302 gccgttcggattctataattcaaactgcatagggcgcgcaagaaactcatatggtgggaaaagaagcag 370  Q
    |||||| |||||||||||||| ||||||||| || |||| ||||||||||| | ||| |||||||||||    
T  74 gccgtttggattctataattcgaactgcataaggagcgcgagaaactcataggttggaaaaagaagcag 6  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 1e-27; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 217 - 320
Target Start/End: Original strand, 39791212 - 39791314
Alignment:
Q  217 cctatgagtttctcgcgcgtcctatttggattttaaaatccgaaatatttcaatgtgtttttagaaatttttatggggtgtttatgccgttcggattcta 316  Q
    ||||| ||||||||  |||||||||||| ||| |||||||||||||||||||| ||||||| | | ||||||||||||||||||||||||||||||||||    
T  39791212 cctataagtttctcatgcgtcctatttgaattctaaaatccgaaatatttcaacgtgttttga-agatttttatggggtgtttatgccgttcggattcta 39791310  T
Q  317 taat 320  Q
    ||||    
T  39791311 taat 39791314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 204 - 320
Target Start/End: Original strand, 24083163 - 24083279
Alignment:
Q  204 ttactttttccatcctatgagtttctcgcgcgtcctatttggattttaaaatccgaaatatttcaatgtgtttttagaaatttttatggggtgtttatgc 303  Q
    |||||||| | ||||| ||||||||||||| | |||||||||||| ||||||||||||||||| || |||| || ||| |||||||||||||||||||||    
T  24083163 ttacttttcctatcctgtgagtttctcgcgtgccctatttggattctaaaatccgaaatattttaacgtgtgttaagagatttttatggggtgtttatgc 24083262  T
Q  304 cgttcggattctataat 320  Q
     ||| ||||| ||||||    
T  24083263 agtttggattatataat 24083279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 204 - 372
Target Start/End: Complemental strand, 26989059 - 26988891
Alignment:
Q  204 ttactttttccatcctatgagtttctcgcgcgtcctatttggattttaaaatccgaaatatttcaatgtgtttttagaaatttttatggggtgtttatgc 303  Q
    |||||||| ||| ||||||||||||| ||| | ||||| | |||| ||||||||||||| ||| || ||||||| | |  |||||||||||||| |||||    
T  26989059 ttacttttcccaccctatgagtttcttgcgtgccctatctagattctaaaatccgaaatgttttaacgtgttttga-aggtttttatggggtgtatatgc 26988961  T
Q  304 c-gttcggattctataattcaaactgcatagggcgcgcaagaaactcatatggtgggaaaagaagcagtc 372  Q
    | |||||||||||||| | ||||||||| ||||||||| |||||   ||| |||||||||||||| ||||    
T  26988960 ccgttcggattctatagtccaaactgcacagggcgcgcgagaaatcaatagggtgggaaaagaaggagtc 26988891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 217 - 320
Target Start/End: Original strand, 12311813 - 12311916
Alignment:
Q  217 cctatgagtttctcgcgcgtcctatttggattttaaaatccgaaatatttcaatgtgtttttagaaatttttatggggtgtttatgccgttcggattcta 316  Q
    ||||||||||||||||||||| ||||| |||||||| ||| ||| ||||| ||  | |||||||| ||||||||| ||||||||| ||||||||||||||    
T  12311813 cctatgagtttctcgcgcgtcttatttagattttaacatctgaattattttaacatatttttagagatttttatgaggtgtttattccgttcggattcta 12311912  T
Q  317 taat 320  Q
    ||||    
T  12311913 taat 12311916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 208 - 352
Target Start/End: Original strand, 38303255 - 38303399
Alignment:
Q  208 tttttccatcctatgagtttctcgcgcgtcctatttggattttaaaatccgaaatatttcaatgtgtttttagaaatttttatggggtgtttatgccgtt 307  Q
    ||||||||| |||||||||||||||||   ||||| |||| |||||||| ||||| |||||||| |||||| ||  |||||||    | |||||||||||    
T  38303255 tttttccattctatgagtttctcgcgcactctattcggatcttaaaatctgaaatgtttcaatgcgtttttggaggtttttatacaatatttatgccgtt 38303354  T
Q  308 cggattctataattcaaactgcatagggcgcgcaagaaactcata 352  Q
     | |||||||||| | |||| |||||  ||||  |||||||||||    
T  38303355 tgtattctataatccgaacttcatagaacgcgtgagaaactcata 38303399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 239 - 337
Target Start/End: Complemental strand, 782453 - 782356
Alignment:
Q  239 tatttggattttaaaatccgaaatatttcaatgtgtttttagaaatttttatggggtgtttatgccgttcggattctataattcaaactgcatagggcg 337  Q
    |||| ||||| ||||||||||||||||||||  | ||||| || ||||| ||| ||| ||||||| |||||||||||| ||||| ||||||||| ||||    
T  782453 tattcggattctaaaatccgaaatatttcaacttttttttggagatttt-atgaggtttttatgcagttcggattctaaaattcgaactgcataaggcg 782356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 246 - 346
Target Start/End: Complemental strand, 9689529 - 9689430
Alignment:
Q  246 attttaaaatccgaaatatttcaatgtgtttttagaaatttttatggggtgtttatgccgttcggattctataattcaaactgcatagggcgcgcaagaa 345  Q
    ||||||||||| ||||||||| ||  |||||| ||| ||| ||||| ||||||||| ||||||||||| ||||||  ||||| ||||| |||||| ||||    
T  9689529 attttaaaatctgaaatattttaacttgtttt-agagattcttatgaggtgtttataccgttcggattatataatctaaactacatagagcgcgcgagaa 9689431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 208 - 332
Target Start/End: Complemental strand, 41945321 - 41945199
Alignment:
Q  208 tttttccatcctatgagtttctcgcgcgtcctatttggattttaaaatccgaaatatttcaatgtgtttttagaaatttttatggggtgtttatgccgtt 307  Q
    |||||||| ||||||| ||||| ||||| |||||||| ||| ||||||| ||||| ||| ||  |||||| | |  |||||||||| |||||||| ||||    
T  41945321 tttttccaccctatgactttcttgcgcgccctatttgaattctaaaatctgaaatgttttaacatgttttga-aggtttttatggg-tgtttatgtcgtt 41945224  T
Q  308 cggattctataattcaaactgcata 332  Q
    |||||| |||||| | |||||||||    
T  41945223 cggattatataatccgaactgcata 41945199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 204 - 320
Target Start/End: Original strand, 55193462 - 55193577
Alignment:
Q  204 ttactttttccatcctatgagtttctcgcgcgtcctatttggattttaaaatccgaaatatttcaatgtgtttttagaaatttttatggggtgtttatgc 303  Q
    |||||||||||| ||||||||||||||| |||  |||||| |||||||||||  ||||||||| ||  | |||| |    |||||||||||| ||||||     
T  55193462 ttactttttcca-cctatgagtttctcgtgcgctctatttagattttaaaatatgaaatattttaacatcttttgaattttttttatggggtttttatgt 55193560  T
Q  304 cgttcggattctataat 320  Q
     ||||||||||||||||    
T  55193561 tgttcggattctataat 55193577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 610 - 659
Target Start/End: Original strand, 20743290 - 20743339
Alignment:
Q  610 ctatgattacagtgaatcacgtcatattctcaaattattatccgtgtcgg 659  Q
    ||||||||||| ||||| | ||||| ||||||||||||||||||||||||    
T  20743290 ctatgattacactgaattatgtcattttctcaaattattatccgtgtcgg 20743339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 223 - 371
Target Start/End: Complemental strand, 39927582 - 39927435
Alignment:
Q  223 agtttctcgcgcgtcctatttggattttaaaatccgaaatatttcaatgtgtttttagaaatttttatggggtgtttatgccgttcggattctataattc 322  Q
    ||||| || |||| |||| | ||||||||||||||||||| |||||| |||||||| |||  ||||||| |||| |||| |  |||||||| ||||||      
T  39927582 agtttgtcccgcgccctactcggattttaaaatccgaaatgtttcaacgtgttttt-gaaggttttatgaggtggttatactattcggattttataatca 39927484  T
Q  323 aaactgcatagggcgcgcaagaaactcatatggtgggaaaagaagcagt 371  Q
     || | |||||||  |||||||||||| || ||| | |||| |||||||    
T  39927483 gaattacatagggtacgcaagaaactcctagggtagaaaaataagcagt 39927435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 319
Target Start/End: Complemental strand, 7257403 - 7257289
Alignment:
Q  204 ttactttttccatcctatgagtttctcgcgcgtcctatttggattttaaaatccgaaatatttcaatgtgtttttagaaatttttatggggtgtttatgc 303  Q
    |||||||||||| |||||||| |||||||  | |||||| | ||| |||||||| | |||||||||  ||||||| | |  ||||||| ||  |||||||    
T  7257403 ttactttttccaccctatgaggttctcgcatgccctattcgtattctaaaatccaagatatttcaacatgttttt-ggaggttttatgaggattttatgc 7257305  T
Q  304 cgttcggattctataa 319  Q
     |||||||||||||||    
T  7257304 agttcggattctataa 7257289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 615 - 670
Target Start/End: Complemental strand, 32910593 - 32910538
Alignment:
Q  615 attacagtgaatcacgtcatattctcaaattattatccgtgtcggtgtatcggtgt 670  Q
    |||||| ||||| | ||||| ||||||||||||||||||||||||| | |||||||    
T  32910593 attacactgaattatgtcattttctcaaattattatccgtgtcggtatgtcggtgt 32910538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 208 - 327
Target Start/End: Complemental strand, 45195865 - 45195747
Alignment:
Q  208 tttttccatcctatgagtttctcgcgcgtcctatttggattttaaaatccgaaatatttcaatgtgtttttagaaatttttatggggtgtttatgccgtt 307  Q
    |||||| |||||||||||||||||| || | |||||| ||| |||||| |||||| ||| || ||  |||| || ||||||||  | |||||||| ||||    
T  45195865 tttttctatcctatgagtttctcgcacgccttatttgaattctaaaattcgaaatgttttaacgt-attttggagatttttataagatgtttatgtcgtt 45195767  T
Q  308 cggattctataattcaaact 327  Q
    || ||| |||||| ||||||    
T  45195766 cgaattatataatccaaact 45195747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 204 - 278
Target Start/End: Original strand, 30441369 - 30441443
Alignment:
Q  204 ttactttttccatcctatgagtttctcgcgcgtcctatttggattttaaaatccgaaatatttcaatgtgttttt 278  Q
    |||||||| ||| |||||||| |||||| ||  ||||||| |||| |||||||||||| ||||||| || |||||    
T  30441369 ttacttttcccaccctatgagcttctcgtgcaccctatttagattctaaaatccgaaacatttcaacgtattttt 30441443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 204 - 242
Target Start/End: Original strand, 37211007 - 37211045
Alignment:
Q  204 ttactttttccatcctatgagtttctcgcgcgtcctatt 242  Q
    ||||||||| ||||||||||||||||| |||||||||||    
T  37211007 ttacttttttcatcctatgagtttctcacgcgtcctatt 37211045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 259 - 325
Target Start/End: Original strand, 53689058 - 53689124
Alignment:
Q  259 aaatatttcaatgtgtttttagaaatttttatggggtgtttatgccgttcggattctataattcaaa 325  Q
    |||| |||||| || |||||  || ||||||||||||||||||| ||||| ||||||||||| ||||    
T  53689058 aaatgtttcaacgtatttttgaaattttttatggggtgtttatgtcgttcagattctataatccaaa 53689124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 610 - 671
Target Start/End: Complemental strand, 7012113 - 7012052
Alignment:
Q  610 ctatgattacagtgaatcacgtcatattctcaaattattatccgtgtcggtgtatcggtgtc 671  Q
    ||||||| ||| ||||| | ||||| |||||||||||||||| ||||||| || ||||||||    
T  7012113 ctatgatcacactgaattatgtcattttctcaaattattatcggtgtcggcgtgtcggtgtc 7012052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 598 - 659
Target Start/End: Original strand, 16402211 - 16402272
Alignment:
Q  598 ccgacacgacgtctatgattacagtgaatcacgtcatattctcaaattattatccgtgtcgg 659  Q
    ||||||||||  |||| |||||| || |||| || || ||||||||||||||||||||||||    
T  16402211 ccgacacgacagctataattacactgtatcatgttattttctcaaattattatccgtgtcgg 16402272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 539 - 588
Target Start/End: Complemental strand, 17876286 - 17876237
Alignment:
Q  539 cctatgaagtacaaacactccttgaattaggggtgttctggtgtcggaca 588  Q
    ||||||||| ||| |||||||||| |||||| |||| |||||||||||||    
T  17876286 cctatgaagcacagacactccttggattaggtgtgtcctggtgtcggaca 17876237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 598 - 659
Target Start/End: Complemental strand, 24343566 - 24343505
Alignment:
Q  598 ccgacacgacgtctatgattacagtgaatcacgtcatattctcaaattattatccgtgtcgg 659  Q
    ||||||||||  |||| |||||| ||||| | || || ||||||||||||||||||||||||    
T  24343566 ccgacacgacacctataattacactgaattatgtaattttctcaaattattatccgtgtcgg 24343505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 1e-21; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 217 - 334
Target Start/End: Complemental strand, 31768009 - 31767893
Alignment:
Q  217 cctatgagtttctcgcgcgtcctatttggattttaaaatccgaaatatttcaatgtgtttttagaaatttttatggggtgtttatgccgttcggattcta 316  Q
    |||||| | ||||| |||| ||||||||||||||||||||||||||||||||| |||||||| |||| ||||||| ||| ||||||| || |||||||||    
T  31768009 cctatgcgcttctcacgcgccctatttggattttaaaatccgaaatatttcaacgtgttttt-gaaagttttatgaggtttttatgcagtgcggattcta 31767911  T
Q  317 taattcaaactgcatagg 334  Q
     |||   |||||||||||    
T  31767910 aaatctgaactgcatagg 31767893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 197 - 278
Target Start/End: Complemental strand, 31578088 - 31578008
Alignment:
Q  197 aaggctgttactttttccatcctatgagtttctcgcgcgtcctatttggattttaaaatccgaaatatttcaatgtgttttt 278  Q
    ||||| ||||||||| ||| |||||||| |||||||||| |||||||||||| |||||||||||||||||||| ||||||||    
T  31578088 aaggccgttacttttccca-cctatgagcttctcgcgcgccctatttggattctaaaatccgaaatatttcaacgtgttttt 31578008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 204 - 352
Target Start/End: Complemental strand, 2749297 - 2749150
Alignment:
Q  204 ttactttttccatcctatgagtttctcgcgcgtcctatttggattttaaaatccgaaatatttcaatgtgtttttagaaatttttatggggtgtttatgc 303  Q
    |||||| ||||| | ||||||||||||||||| || |||| |||| ||||||||||||| ||||||  || |||| ||  |||||||||||  ||||||     
T  2749297 ttacttgttccaccttatgagtttctcgcgcgcccaatttagattctaaaatccgaaatgtttcaacttg-ttttggaggtttttatggggcatttatgg 2749199  T
Q  304 cgttcggattctataattcaaactgcatagggcgcgcaagaaactcata 352  Q
     |||||||||||||||| |||| ||||||| ||  | ||||||||||||    
T  2749198 tgttcggattctataatccaaattgcatagagcatggaagaaactcata 2749150  T

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Target: chr1; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 208 - 351
Target Start/End: Original strand, 23404879 - 23405021
Alignment:
Q  208 tttttccatcctatgagtttctcgcgcgtcctatttggattttaaaatccgaaatatttcaatgtgtttttagaaatttttatggggtgtttatgccgtt 307  Q
    ||||||||||||||||||||||||| |||| |||| | ||||||||||||||||  ||||||  ||||||| | ||  |||||||||| |||||||||||    
T  23404879 tttttccatcctatgagtttctcgcacgtcatattcgaattttaaaatccgaaacgtttcaacatgttttt-ggaagatttatggggtttttatgccgtt 23404977  T
Q  308 cggattctataattcaaactgcatagggcgcgcaagaaactcat 351  Q
     | |||||||| | | || |  ||||||||||| | ||||||||    
T  23404978 tgaattctatattccgaaatatatagggcgcgcgaaaaactcat 23405021  T

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Target: chr1; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 237 - 352
Target Start/End: Complemental strand, 18639106 - 18638990
Alignment:
Q  237 cctatttggattttaaaatccgaaatatttcaatgtgtttttagaa-atttttatggggtgtttatgccgttcggattctataattcaaactgcataggg 335  Q
    |||||| |||||||||||| |||||||||||||| | ||||| | | |||||||||||||| |||||||||||  ||| ||||||   ||||||||||||    
T  18639106 cctattcggattttaaaattcgaaatatttcaatatattttttgtagatttttatggggtgcttatgccgttcaaattttataatctgaactgcataggg 18639007  T
Q  336 cgcgcaagaaactcata 352  Q
     || | |||||||||||    
T  18639006 tgcacgagaaactcata 18638990  T

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Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 204 - 366
Target Start/End: Complemental strand, 7439183 - 7439023
Alignment:
Q  204 ttactttttccatcctatgagtttctcgcgcgtcctatttggattttaaaatccgaaatatttcaatgtgtttttagaaatttttatggggtgtttatgc 303  Q
    ||||||||  ||||||||||| |||||||||||||||||   ||| |||||||  ||||||||||| |||||||| |||  ||||||||| | ||||| |    
T  7439183 ttacttttctcatcctatgagattctcgcgcgtcctattcaaattctaaaatctaaaatatttcaacgtgttttt-gaaggttttatgggat-tttatac 7439086  T
Q  304 cgttcggattctataattcaaactgcatagggcgcgcaagaaactcatatggtgggaaaagaa 366  Q
     ||||||||| || ||| | || | |||| ||||||  ||||||||||| ||||| |||||||    
T  7439085 ggttcggattataaaatccgaattacataaggcgcgtgagaaactcatagggtggaaaaagaa 7439023  T

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Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 233 - 278
Target Start/End: Complemental strand, 14118323 - 14118278
Alignment:
Q  233 gcgtcctatttggattttaaaatccgaaatatttcaatgtgttttt 278  Q
    |||||||||||| |||||||||||||||||||||||||||||||||    
T  14118323 gcgtcctatttgaattttaaaatccgaaatatttcaatgtgttttt 14118278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 204 - 265
Target Start/End: Complemental strand, 32556609 - 32556548
Alignment:
Q  204 ttactttttccatcctatgagtttctcgcgcgtcctatttggattttaaaatccgaaatatt 265  Q
    |||||||||  |||||||||||||||||| ||||||||| ||||||||||||| ||||||||    
T  32556609 ttactttttttatcctatgagtttctcgcacgtcctattcggattttaaaatctgaaatatt 32556548  T

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Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 285 - 373
Target Start/End: Complemental strand, 30527737 - 30527649
Alignment:
Q  285 ttttatggggtgtttatgccgttcggattctataattcaaactgcatagggcgcgcaagaaactcatatggtgggaaaagaagcagtct 373  Q
    ||||||||| | |||||||||||||||||||| ||| ||| ||||||||| ||||  |||||| |||| | ||||||||||| ||||||    
T  30527737 ttttatgggttttttatgccgttcggattctaaaatccaatctgcataggacgcgtgagaaacacataggatgggaaaagaaacagtct 30527649  T

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Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 201 - 363
Target Start/End: Complemental strand, 37865576 - 37865414
Alignment:
Q  201 ctgttactttttccatcctatgagtttctcgcgcgtcctatttggattttaaaatccgaaatatttcaatgtgtttttagaaatttttatggggtgttta 300  Q
    ||||||||||   ||| |||||||||||||  | | |||||| ||||||||||||  ||||| | |||  |||||||| ||  ||||   ||||||||||    
T  37865576 ctgttactttactcattctatgagtttctcatgtgccctattcggattttaaaatttgaaatgtctcagcgtgtttttggaggttttatgggggtgttta 37865477  T
Q  301 tgccgttcggattctataattcaaactgcatagggcgcgcaagaaactcatatggtgggaaaa 363  Q
    || ||||| ||||||||||| | ||||||||||||   ||||||| |||||| ||||| ||||    
T  37865476 tgtcgttcagattctataatccgaactgcatagggtaagcaagaagctcatagggtggaaaaa 37865414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 305 - 373
Target Start/End: Complemental strand, 38091242 - 38091173
Alignment:
Q  305 gttcggattctataattcaaactgcatagggcgc-gcaagaaactcatatggtgggaaaagaagcagtct 373  Q
    |||||||||||| ||| ||||||||||||||||| |  ||||||||||| ||||| ||||||| ||||||    
T  38091242 gttcggattctaaaatccaaactgcatagggcgcagtgagaaactcatacggtggaaaaagaaacagtct 38091173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 204 - 352
Target Start/End: Complemental strand, 17339837 - 17339690
Alignment:
Q  204 ttactttttccatcctatgagtttctcgcgcgtcctatttggattttaaaatccgaaatatttcaatgtgtttttagaaatttttatggggtgtttatgc 303  Q
    |||||||||||||||||| ||||||||    | ||||||  |||| ||||||| ||||||||| |||||| |||| ||  ||||||| | | ||||||      
T  17339837 ttactttttccatcctatcagtttctcatatgccctattcagattctaaaatctgaaatatttaaatgtg-ttttggaggtttttatagagagtttattt 17339739  T
Q  304 cgttcggattctataattcaaactgcatagggcgcgcaagaaactcata 352  Q
    ||||||| |||||||||   ||||||||||| | | ||||||| |||||    
T  17339738 cgttcgggttctataatctgaactgcataggacacacaagaaattcata 17339690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 324 - 376
Target Start/End: Complemental strand, 35814516 - 35814464
Alignment:
Q  324 aactgcatagggcgcgcaagaaactcatatggtgggaaaagaagcagtcttta 376  Q
    ||||||||||| ||||| ||||||||||| ||| | |||||||||||||||||    
T  35814516 aactgcataggacgcgcgagaaactcatagggtagaaaaagaagcagtcttta 35814464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 610 - 662
Target Start/End: Original strand, 40747785 - 40747837
Alignment:
Q  610 ctatgattacagtgaatcacgtcatattctcaaattattatccgtgtcggtgt 662  Q
    |||| |||||| ||||| | ||||| |||||||||||||||||||||||||||    
T  40747785 ctataattacattgaattatgtcattttctcaaattattatccgtgtcggtgt 40747837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 339
Target Start/End: Complemental strand, 435073 - 434940
Alignment:
Q  204 ttactttttccatcctatgagtttctcgcgcgtcctatttggattttaaaatccgaaatatttcaatgtgtttttagaaatttttatggggtgtttatgc 303  Q
    |||||||||| ||| |||||| ||||| |||| ||||||||  || |||||||  |||||||||||  ||||||| ||| |||||| | ||| || ||||    
T  435073 ttactttttctatcatatgagcttctcacgcgccctatttgagttctaaaatctaaaatatttcaacatgttttt-gaagtttttacgaggttttcatgc 434975  T
Q  304 cgttcggattctataattcaaactgcatagggcgcg 339  Q
     | |||||||||| || || ||||||||||| ||||    
T  434974 agctcggattcta-aaatccaactgcataggacgcg 434940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 219 - 276
Target Start/End: Complemental strand, 10308290 - 10308233
Alignment:
Q  219 tatgagtttctcgcgcgtcctatttggattttaaaatccgaaatatttcaatgtgttt 276  Q
    |||||||||||||| || | ||||| |||| |||||||| ||||||||||| ||||||    
T  10308290 tatgagtttctcgcacgccatatttagattctaaaatccaaaatatttcaacgtgttt 10308233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 204 - 237
Target Start/End: Original strand, 14874374 - 14874407
Alignment:
Q  204 ttactttttccatcctatgagtttctcgcgcgtc 237  Q
    |||||||||||||||||||||||||||| |||||    
T  14874374 ttactttttccatcctatgagtttctcgtgcgtc 14874407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 598 - 657
Target Start/End: Complemental strand, 21145526 - 21145466
Alignment:
Q  598 ccgacacgacgtctatgattacagtgaatcacgtca-tattctcaaattattatccgtgtc 657  Q
    ||||||||||| ||||||||||| ||||| | |||| | || |||||||||||||||||||    
T  21145526 ccgacacgacgcctatgattacactgaattatgtcatttttttcaaattattatccgtgtc 21145466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 204 - 268
Target Start/End: Complemental strand, 38091332 - 38091268
Alignment:
Q  204 ttactttttccatcctatgagtttctcgcgcgtcctatttggattttaaaatccgaaatatttca 268  Q
    ||||||||  |||||| |||  |||||||||||||||||  |||| |||||| ||||||||||||    
T  38091332 ttacttttcacatcctgtgacgttctcgcgcgtcctattcagattctaaaattcgaaatatttca 38091268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 610 - 662
Target Start/End: Original strand, 42004959 - 42005011
Alignment:
Q  610 ctatgattacagtgaatcacgtcatattctcaaattattatccgtgtcggtgt 662  Q
    ||||||||||| | ||| | ||||| |||||||||||||||||||||| ||||    
T  42004959 ctatgattacactaaattatgtcattttctcaaattattatccgtgtctgtgt 42005011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 217 - 332
Target Start/End: Original strand, 6417 - 6532
Alignment:
Q  217 cctatgagtttctcgcgcgtcctatttggattttaaaatccgaaatatttcaatgtgtttttagaaatttttatggggtgtttatgccgttcggattcta 316  Q
    |||||||||||||||| |  | || | |||||||| ||||| |||| |||||| || ||||||||  |||||||| || ||||||| |||||||||||||    
T  6417 cctatgagtttctcgcacaccataataggattttagaatccaaaatgtttcaacgtatttttagaggtttttatgaggggtttatgtcgttcggattcta 6516  T
Q  317 taattcaaactgcata 332  Q
    |||| | |||||||||    
T  6517 taatccgaactgcata 6532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0239 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0239
Description:

Target: scaffold0239; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 284 - 327
Target Start/End: Complemental strand, 16647 - 16604
Alignment:
Q  284 tttttatggggtgtttatgccgttcggattctataattcaaact 327  Q
    ||||||||||||||||||| |||| ||||| |||||||||||||    
T  16647 tttttatggggtgtttatgtcgtttggattatataattcaaact 16604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 610 - 671
Target Start/End: Complemental strand, 26045 - 25984
Alignment:
Q  610 ctatgattacagtgaatcacgtcatattctcaaattattatccgtgtcggtgtatcggtgtc 671  Q
    |||||||| || ||||||| ||||| |||||| |||||||||  |||||||||||| |||||    
T  26045 ctatgattgcactgaatcatgtcattttctcacattattatcgatgtcggtgtatcagtgtc 25984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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