View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3427_low_2 (Length: 617)

Name: NF3427_low_2
Description: NF3427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3427_low_2
NF3427_low_2
[»] chr3 (6 HSPs)
chr3 (211-560)||(12072110-12072460)
chr3 (217-560)||(14825194-14825557)
chr3 (259-478)||(3189925-3190144)
chr3 (259-478)||(3206848-3207067)
chr3 (12-88)||(12072567-12072643)
chr3 (16-88)||(14825043-14825115)
[»] chr5 (2 HSPs)
chr5 (210-560)||(26887604-26887954)
chr5 (12-88)||(26887420-26887496)
[»] chr4 (1 HSPs)
chr4 (267-478)||(147629-147839)
[»] chr6 (1 HSPs)
chr6 (324-478)||(22252584-22252738)


Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 211 - 560
Target Start/End: Complemental strand, 12072460 - 12072110
Alignment:
Q  211 caacatattttccggatctagacagacaatttatgtatagtgaatgaatttttaataataattgaatcaaagacaagcacaacaacaattacaaattctn 310  Q
    ||||||||||| |||||||||||||||| ||||||||||||||||  ||||||| ||||||||||| |||| |||| ||||||||||||||||||||||     
T  12072460 caacatatttttcggatctagacagacagtttatgtatagtgaatttatttttagtaataattgaaccaaacacaaacacaacaacaattacaaattcta 12072361  T
Q  311 nnnnnnn-ccagtttatcaattatggaggagggaaaaattgagagagagaaattattatataatgagagagag--ctaaaattcaataacccttttcttc 407  Q
            |||||||||| |||||||||||||||||| ||||||||||||||| ||| |||||||||||||||  || ||||||||||||| |||||| |    
T  12072360 aaaaaaaaccagtttatcgattatggaggagggaaaatttgagagagagaaatcattgtataatgagagagagagctgaaattcaataaccattttctac 12072261  T
Q  408 ttcactcgaacacaacaacaattataagttcttcttcactctccaaatccccaaccctttttaatttcaacnnnnnnnnntcctcaaatccatacacagc 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||         |||||||||| ||||||| |    
T  12072260 ttcactcgaacacaacaacaattataagttcttcttcactctccaaatccctaaccctttttaatttcaac--aaaaaaatcctcaaatctatacacaac 12072163  T
Q  508 aacaatttctcttctattctcttctccctgaattcactattgtgaaccaaatc 560  Q
    |||||||| |||||||||||||||||||| ||||||| |||| ||||||||||    
T  12072162 aacaatttttcttctattctcttctccctcaattcacaattgcgaaccaaatc 12072110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 217 - 560
Target Start/End: Original strand, 14825194 - 14825557
Alignment:
Q  217 attttccggatctagacagacaatttatgtatagtgaatgaatttttaa-taataattgaatcaaagacaagcacaacaacaattacaaattctnnnnnn 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| | |||| |||||||||||||||| ||||||||||||||||  ||||          
T  14825194 attttccggatctagacagacaatttatgtatagtgaatgaattttttagtaattattgaatcaaagacaaacacaacaacaattacaggttctaaaaaa 14825293  T
Q  316 nnccagtttatcaattatggaggagggaaaaatt--gagagagagaaattattatataatgagagagagcta------------------aaattcaata 395  Q
      | |||||||| || ||||||||||||||||||  |||||||||||||  || |||||||||||||||  |                  |||| |||||    
T  14825294 aactagtttatcgataatggaggagggaaaaatttagagagagagaaatcgttgtataatgagagagagagagagagagagagagagatgaaatccaata 14825393  T
Q  396 acccttttcttcttcactcgaacacaacaacaattataagttcttcttcactctccaaatccccaaccctttttaatttcaacnnnnnnnnntcctcaaa 495  Q
    ||| ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| || ||||||||||||||||         ||||||||    
T  14825394 accattttcttcttcactcaaacacaacaacaattattagttcttcttcactctccaaatccctaagcctttttaatttcaac-aaaaaaaatcctcaaa 14825492  T
Q  496 tccatacacagcaacaatttctcttctattctcttctccctgaattcactattgtgaaccaaatc 560  Q
    |||||||||| ||| ||||| ||||||||||||||||||||  |||||| |||||||||||||||    
T  14825493 tccatacacaacaataatttttcttctattctcttctccctctattcacaattgtgaaccaaatc 14825557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 259 - 478
Target Start/End: Complemental strand, 3190144 - 3189925
Alignment:
Q  259 tttttaataataattgaatcaaagacaagcacaacaacaattacaaattctnnnnnnnnccagttt-atcaattatggaggagggaaaaattgagagaga 357  Q
    |||||| |||||||||||||| ||| || ||||||||||||||||| ||||        ||| ||| ||| ||||||||||||| |||||||||||||||    
T  3190144 tttttagtaataattgaatcagagataaacacaacaacaattacaagttctaaaaaacaccacttttatcgattatggaggaggaaaaaattgagagaga 3190045  T
Q  358 gaaattattatataatgagagagagctaaaattcaataacccttttcttcttcactcgaacacaacaacaattataagttcttcttcactctccaaatcc 457  Q
    |||||| || |||||| |||||||||  |||| || |||||||||| |||||||||| ||||||||||||||||  |||| |||||||||||||||||||    
T  3190044 gaaattgttctataattagagagagcataaatccattaaccctttttttcttcactcaaacacaacaacaattaccagtt-ttcttcactctccaaatcc 3189946  T
Q  458 ccaaccctttttaatttcaac 478  Q
    | |||||||||||||||||||    
T  3189945 ctaaccctttttaatttcaac 3189925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 259 - 478
Target Start/End: Complemental strand, 3207067 - 3206848
Alignment:
Q  259 tttttaataataattgaatcaaagacaagcacaacaacaattacaaattctnnnnnnnnccagttt-atcaattatggaggagggaaaaattgagagaga 357  Q
    |||||| |||||||||||||| ||| || ||||||||||||||||| ||||        ||| ||| ||| |||||||||||||||||||||||||||||    
T  3207067 tttttagtaataattgaatcagagataaacacaacaacaattacaagttctaaaaaaaaccacttttatcgattatggaggagggaaaaattgagagaga 3206968  T
Q  358 gaaattattatataatgagagagagctaaaattcaataacccttttcttcttcactcgaacacaacaacaattataagttcttcttcactctccaaatcc 457  Q
    |||||| || |||||| |||||||||  |||| || |||||||||| |||||||||| ||||||||||||||||  |||| ||||| |||||||||||||    
T  3206967 gaaattgttctataattagagagagcataaatccattaaccctttttttcttcactcaaacacaacaacaattaccagtt-ttctttactctccaaatcc 3206869  T
Q  458 ccaaccctttttaatttcaac 478  Q
    | |||||||||||||||||||    
T  3206868 ctaaccctttttaatttcaac 3206848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 12 - 88
Target Start/End: Complemental strand, 12072643 - 12072567
Alignment:
Q  12 catcatcaccaacaacatgttcttcatcttgatccttttaatagtcannnnnnncattattcttaaatcaaaaaact 88  Q
    |||||| ||||||||||||||||||||||| |||| |||||||||||       ||||||| ||||| |||||||||    
T  12072643 catcattaccaacaacatgttcttcatcttcatccctttaatagtcatttttttcattattattaaaccaaaaaact 12072567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 88
Target Start/End: Original strand, 14825043 - 14825115
Alignment:
Q  16 atcaccaacaacatgttcttcatcttgatccttttaatagtcannnnnnncattattcttaaatcaaaaaact 88  Q
    ||||| |||| ||||||||||||||| |||| |||||||||||       ||||||||||||| |||||||||    
T  14825043 atcacgaacatcatgttcttcatcttcatccctttaatagtcatttttttcattattcttaaaccaaaaaact 14825115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 167; Significance: 4e-89; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 210 - 560
Target Start/End: Original strand, 26887604 - 26887954
Alignment:
Q  210 tcaacatattttccggatctagacagacaatttatgtatagtgaatgaattttt-aataataattgaatcaaagacaagcacaacaacaattacaaattc 308  Q
    |||||| ||||| ||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |||||| ||||||||||||||||| |||    
T  26887604 tcaacacatttttcggatctagacagacaatttatgtatagtgaataaattttttaataataattgaatcagagacaaacacaacaacaattacaagttc 26887703  T
Q  309 tnnnnnnnnccagtttatcaattatggaggagggaaaaattgagagagagaaattattatataatgagagagagctaaaattcaataacccttttcttct 408  Q
    |        |||||||||  ||||||||||||||||||||||||||||||||||  || ||||||||||  |||||||||| ||||||||||||||||||    
T  26887704 taaaaaacaccagtttattgattatggaggagggaaaaattgagagagagaaatcgttgtataatgaga--gagctaaaatccaataacccttttcttct 26887801  T
Q  409 tcactcgaacacaacaacaattataagttcttcttcactctccaaatccccaaccctttttaatttcaac-nnnnnnnnntcctcaaatccatacacagc 507  Q
    |||||  ||||||||||||||||| |||||||||| |||||||||||||| ||||||||| ||||| |||          || ||||||||||||||| |    
T  26887802 tcactgaaacacaacaacaattatcagttcttctttactctccaaatccctaacccttttcaatttgaacaaaaaaaaaatcttcaaatccatacacaac 26887901  T
Q  508 aacaatttctcttctattctcttctccctgaattcactattgtgaaccaaatc 560  Q
    |||||||| |||| |||||||||||||||  |||||| |||||||| ||||||    
T  26887902 aacaatttttcttatattctcttctccctctattcacaattgtgaatcaaatc 26887954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 12 - 88
Target Start/End: Original strand, 26887420 - 26887496
Alignment:
Q  12 catcatcaccaacaacatgttcttcatcttgatccttttaatagtcannnnnnncattattcttaaatcaaaaaact 88  Q
    |||||||||||||||||||||||||||||| |||| |||||||||||       ||||||||||||| |||||||||    
T  26887420 catcatcaccaacaacatgttcttcatcttcatccctttaatagtcatttttttcattattcttaaaccaaaaaact 26887496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 88; Significance: 5e-42; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 267 - 478
Target Start/End: Complemental strand, 147839 - 147629
Alignment:
Q  267 aataattgaatcaaagacaagcacaacaacaattacaaattctnnnnnnnnccagtttatcaattatggaggagggaaaaattgagagagagaaattatt 366  Q
    ||||||||||||| ||| || ||||||||||||||||| ||||        |   |||||| |||||||||||||||||||||||||||||  |||  ||    
T  147839 aataattgaatcagagataaacacaacaacaattacaagttctaaaaaaaccacttttatcgattatggaggagggaaaaattgagagagaacaatcgtt 147740  T
Q  367 atataatgagagagagctaaaattcaataacccttttcttcttcactcgaacacaacaacaattataagttcttcttcactctccaaatccccaaccctt 466  Q
     || |||||||||||||  ||||  | ||||||||||||||||||||| ||||||||||||||||  |||| |||||||||||||||||||| |||||||    
T  147739 ctaaaatgagagagagcagaaatctattaacccttttcttcttcactcaaacacaacaacaattaccagtt-ttcttcactctccaaatccctaaccctt 147641  T
Q  467 tttaatttcaac 478  Q
    ||||||||||||    
T  147640 tttaatttcaac 147629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 324 - 478
Target Start/End: Complemental strand, 22252738 - 22252584
Alignment:
Q  324 tatcaattatggaggagggaaaaattgagagagagaaattattatataatgagagagagctaaaattcaataacccttttcttcttcactcgaacacaac 423  Q
    |||||| ||||||||||||||||||||||||||||||||   | ||  |||||||||| || |||| || ||||||||||||||||||||| ||||||||    
T  22252738 tatcaagtatggaggagggaaaaattgagagagagaaatcgatgtagcatgagagagaactgaaatccattaacccttttcttcttcactcaaacacaac 22252639  T
Q  424 aacaattataagttcttcttcactctccaaatccccaaccctttttaatttcaac 478  Q
    ||||||||| | ||||||| ||||||||||| ||| |||||||||||||||||||    
T  22252638 aacaattatcacttcttctccactctccaaaaccctaaccctttttaatttcaac 22252584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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