View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3427_low_6 (Length: 353)
Name: NF3427_low_6
Description: NF3427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3427_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 11 - 337
Target Start/End: Complemental strand, 55301253 - 55300927
Alignment:
| Q |
11 |
cacagatactcatacatatttccttcctcagccgtgttcatcgacttatgctcacaaggtaattccattgacactgtttgttcagaagcagtcttttgac |
110 |
Q |
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| T |
55301253 |
cacagatactcatacatatttccttccacagccgtgttcatcgacttatgctcacaaggtaattccattgacactgtttgttcagaagcagtcttttgac |
55301154 |
T |
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| Q |
111 |
cacccaaccaaaagtctctgagttcctctttcaaatctgttgtctctgtatttattagtacattctcattcccaacttgtgacgcacgactctctctcaa |
210 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55301153 |
cacccaaccaaaagtctctgagttcctctttcaaacctgttgtctctgtatttattagtacattctcattcccaacttgtgacgcacgactctctctcaa |
55301054 |
T |
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| Q |
211 |
tggcttctcttgttcaatcatcaccaattccatctcctcctccatacccaaatctgttttgtcagcattttcttgttgtgacaatactgtctccgaattt |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55301053 |
tggcttctcttgttcaatcatcaccaattccatctcctcctccatacccaaatctgttttgtcagcattttcttgttgtgacaatactgtctccgaattt |
55300954 |
T |
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| Q |
311 |
gatgttactctctccctcaaatgcttt |
337 |
Q |
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||||||||||||||||||||| ||||| |
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| T |
55300953 |
gatgttactctctccctcaaaggcttt |
55300927 |
T |
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