View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3427_low_9 (Length: 293)
Name: NF3427_low_9
Description: NF3427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3427_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 280
Target Start/End: Original strand, 6752986 - 6753265
Alignment:
| Q |
1 |
tcagtttgctatagttaaatatttctggtgtaacctaggctatgaggattgtgcaatttctgaagctcgtggacactctggagggatatggatattaaaa |
100 |
Q |
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| T |
6752986 |
tcagttttctagagttaaaaatttctggtgtaacctaggctatgaggattgtgcaatttctgaagctcgtggacactctggagggatatggatattaaaa |
6753085 |
T |
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| Q |
101 |
tctcaaaattgcacatatgatattgagattatagataactattttcaatctatcactatagctctagaaaaggatagagtaaggtggtacttgtcaacta |
200 |
Q |
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| T |
6753086 |
tctcaaaattgcacatatgatattgagattatagataactattttcaatctatcactatagctctagaaaaggatagagtaaggtggtacttgtcaacta |
6753185 |
T |
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| Q |
201 |
tttatgctagccctcaggttacaaatcgtgaccatctttggtcctacttgaattccttacgacctcatcttaatggccct |
280 |
Q |
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| T |
6753186 |
tttatgctagccctcaggttacaaatcgtgaccatctttggccctacttgaattccttacgacctcatcttaatggccct |
6753265 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 276
Target Start/End: Complemental strand, 1811548 - 1811273
Alignment:
| Q |
1 |
tcagtttgctatagttaaatatttctggtgtaacctaggctatgaggattgtgcaatttctgaagctcgtggacactctggagggatatggatattaaaa |
100 |
Q |
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| T |
1811548 |
tcagttttctagagttaaaaatttctggtgtaacctaggctatgagaattgtgcaatttctgaagctcgtggacactctggaggtatatggatattaaaa |
1811449 |
T |
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| Q |
101 |
tctcaaaattgcacatatgatattgagattatagataactattttcaatctatcactatagctctagaaaaggatagagtaaggtggtacttgtcaacta |
200 |
Q |
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| T |
1811448 |
tctcaaaattgcacatatgatattgagattatagataactattttcaatctatcactatagctctagaaaaggatagagtaaggtggtacttgtcaacta |
1811349 |
T |
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| Q |
201 |
tttatgctagccctcaggttacaaatcgtgaccatctttggtcctacttgaattccttacgacctcatcttaatgg |
276 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||| |
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| T |
1811348 |
tttatgctagccctcaggttacaaatcgtgatcatctttggtcctatttgaattgcttacgacctcatcttaatgg |
1811273 |
T |
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