View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3428_high_12 (Length: 268)
Name: NF3428_high_12
Description: NF3428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3428_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 18 - 252
Target Start/End: Complemental strand, 52997231 - 52996996
Alignment:
| Q |
18 |
aatataactatgatgagtaccatttttgtccccttatatttatctcccctgttttggagcatgttaaagaaggaccaaaaccgtaccttgtgagaaaaat |
117 |
Q |
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| T |
52997231 |
aatataactatgatgagtaccatttttgtccccttatatttatctcccctgttttggagcatgttaaagaaggaccaaaaccgtaccttgtgagaaaaat |
52997132 |
T |
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| Q |
118 |
gctagtgggaaagggtgaatggtgcatgtgaaata-tgtattcatctgtcacaacccaacaattaataaagatgagctgcatgtgtatgtactcacgcct |
216 |
Q |
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|||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52997131 |
gctagtggaaaagggtgaatggtgcatgtgaaatattgtattcatctgtcacaacccaacaattaataaagatgagctgcatgtgtatgtactcacgcct |
52997032 |
T |
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| Q |
217 |
caactcaataattccttgtagttgtaccttctctgc |
252 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
52997031 |
caactcaataattccttgtagttgtaccttctctgc |
52996996 |
T |
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