View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3428_high_20 (Length: 223)
Name: NF3428_high_20
Description: NF3428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3428_high_20 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 12 - 223
Target Start/End: Complemental strand, 39728227 - 39728016
Alignment:
| Q |
12 |
atgagattaagtcaacaaatgcatcaaagaaaatataatctagtaacataatacaatcttcgtaaaatatctgttcgatcaaatttagaatctcaaagtt |
111 |
Q |
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| T |
39728227 |
atgagattaagtcaacaaatgcatcaaagaaaatataatctggtaacataatacaatcttcgtaaaatatctgttcgatcaaatttagaatctcaaagtt |
39728128 |
T |
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| Q |
112 |
ctaaaacaaaatgaactttagttgcttgtacaaagaaaacaacaaaaattagtttttacggttcaacaaatgaacaggcagaagcaatgacacgaaatat |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39728127 |
ctaaaacaaaatgaactttagttgcttgtacaaagaaaacaacaaaaattagtttttacggttcaacaaatgaacaggcagaagcaatgacacgaaatat |
39728028 |
T |
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| Q |
212 |
aaccacaacgag |
223 |
Q |
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|||||||||||| |
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| T |
39728027 |
aaccacaacgag |
39728016 |
T |
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Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 28 - 204
Target Start/End: Complemental strand, 15762817 - 15762645
Alignment:
| Q |
28 |
aaatgcatcaaagaaaatataatctagtaacataatacaatcttcgtaaaatatctgttcgatcaaatttagaatctcaaagttctaaaacaaaatgaac |
127 |
Q |
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||||||||||||| ||||| || | ||||||||| |||||||| |||||||||| |||| || | || |||||||||||||| | ||||||||||| || |
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| T |
15762817 |
aaatgcatcaaagcaaatagaacccggtaacataacacaatctttgtaaaatatcagttcaattatatatagaatctcaaagtcccaaaacaaaatggac |
15762718 |
T |
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| Q |
128 |
tttagttgcttgtacaaagaaaacaacaaaaattagtttttacggttcaacaaatgaacaggcagaagcaatgacac |
204 |
Q |
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| T |
15762717 |
ttt-gttac---tccaaataaaacaacaaaaagtagtttttacacatcaacaaaggattaggaagaagcaatgacac |
15762645 |
T |
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