View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3428_high_21 (Length: 205)
Name: NF3428_high_21
Description: NF3428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3428_high_21 |
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Alignment Details
Target: chr7 (Bit Score: 47; Significance: 5e-18; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 39728039 - 39727993
Alignment:
| Q |
18 |
gacacgaaatataaccacaacgagatcaaatcacgcgcatgaatgct |
64 |
Q |
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| T |
39728039 |
gacacgaaatataaccacaacgagatcaaatcacgcgcatgaatgct |
39727993 |
T |
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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 129 - 188
Target Start/End: Complemental strand, 39727893 - 39727837
Alignment:
| Q |
129 |
cattgaccctttgcaaacaaaatctccaagcaaagttatactataggttatgttaaaaat |
188 |
Q |
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| T |
39727893 |
cattgaccctttgcaaacaaaatctccaaacaaagtta---tataggttatgttaaaaat |
39727837 |
T |
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