View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3428_high_5 (Length: 413)
Name: NF3428_high_5
Description: NF3428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3428_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 19 - 401
Target Start/End: Complemental strand, 36753550 - 36753168
Alignment:
| Q |
19 |
aagcagaaaggaaagcagcctgagccatgataggattgctagcatcattaagaggtgtgagacacattctcttactagatttacccgacccaacaatttc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36753550 |
aagcagaaaggaaagcagcctgagccatgataggattgatagcatcattaagaggtgtgagacacattctcttactagatttacccgacccaacaatttc |
36753451 |
T |
|
| Q |
119 |
ggattcccattcagcatcaacgggaggcttcaactgatcgccaaaaggaagctctagaaaacgagcaacacattccttgtcggtcctaccaacaacttga |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36753450 |
ggattcccattcagcatcaacgggaggcttcaactgatcgccaaaaggaagctctagaaaacgagcaacacattccttgtcggtcctaccaacaacttga |
36753351 |
T |
|
| Q |
219 |
tgagaaaccctcttccaatcatccccgaaatttgtaatagcttcaagaagattcagtgtttcctcctcagtccattcatttttggtctcctcacttatct |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
36753350 |
tgagaaaccctcttccaatcatccccgaaatttgtaatagcttcaagaagattcagtgtttcctcctcagtccattcattttttgtctcctcacttatct |
36753251 |
T |
|
| Q |
319 |
ccactctcttaaattttgtattactcatgccaattcgatagttcccacgaatgaaacacctcgcacacaacgtcctattattc |
401 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
36753250 |
ccactctcttaaattttgtattactcataccaattcgatagttcccacgaatgaaacacctcgcacacaacttcctattattc |
36753168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 115 - 401
Target Start/End: Complemental strand, 19123788 - 19123502
Alignment:
| Q |
115 |
tttcggattcccattcagcatcaacgggaggcttcaactgatcgccaaaaggaagctctagaaaacgagcaacacattccttgtcggtcctaccaacaac |
214 |
Q |
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|||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19123788 |
tttcggattcacattcagcatcaacgggaggctttaactgatcgccaaaaggaagctctagaaaacgagcaacacattccttgtcggtcctaccaacaac |
19123689 |
T |
|
| Q |
215 |
ttgatgagaaaccctcttccaatcatccccgaaatttgtaatagcttcaagaagattcagtgtttcctcctcagtccattcatttttggtctcctcactt |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||| |
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| T |
19123688 |
ttgatgagaaaccctcttccaatcatccccgaaatttgtaatagcttcaagaagattcagtgtttcctcctcagtccattctttttttgtctcctcgctt |
19123589 |
T |
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| Q |
315 |
atctccactctcttaaattttgtattactcatgccaattcgatagttcccacgaatgaaacacctcgcacacaacgtcctattattc |
401 |
Q |
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|||||||||||||| |||| |||||||||||| |||||||||||||| |||| ||| ||||||||| ||||||||||| |||||||| |
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| T |
19123588 |
atctccactctcttgaattctgtattactcataccaattcgatagtttccacaaataaaacacctcacacacaacgtcatattattc |
19123502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 150 - 401
Target Start/End: Original strand, 54292881 - 54293132
Alignment:
| Q |
150 |
aactgatcgccaaaaggaagctctagaaaacgagcaacacattccttgtcggtcctaccaacaacttgatgagaaaccctcttccaatcatccccgaaat |
249 |
Q |
| |
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|||||||| |||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |
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| T |
54292881 |
aactgatcaccaaaaggaagctctaaaaaacgagcaacgcattccttgtcggtcctaccaacaacttgatgagcaaccctcttccaatcatcaccgaaat |
54292980 |
T |
|
| Q |
250 |
ttgtaatagcttcaagaagattcagtgtttcctcctcagtccattcatttttggtctcctcacttatctccactctcttaaattttgtattactcatgcc |
349 |
Q |
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| T |
54292981 |
tcgtaatagcttcaagaagattcagtgtttccttctcagtccattcatttttcgtctcctcgcttatctccactctcttgaattctgtattactcatacc |
54293080 |
T |
|
| Q |
350 |
aattcgatagttcccacgaatgaaacacctcgcacacaacgtcctattattc |
401 |
Q |
| |
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||||||||| || |||||||| ||||||||||||||||||||| |||||||| |
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| T |
54293081 |
aattcgataatttccacgaataaaacacctcgcacacaacgtcatattattc |
54293132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 37 - 157
Target Start/End: Original strand, 54292711 - 54292831
Alignment:
| Q |
37 |
cctgagccatgataggattgctagcatcattaagaggtgtgagacacattctcttactagatttacccgacccaacaatttcggattcccattcagcatc |
136 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |||| |||||||||| ||||||||| | |
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| T |
54292711 |
cctgagccatgataggattgctagcatccgcaagaggtgtgagacacattctcttactagatttatccgacggaacagtttcggattcacattcagcagc |
54292810 |
T |
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| Q |
137 |
aacgggaggcttcaactgatc |
157 |
Q |
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||||||||||||||||||||| |
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| T |
54292811 |
aacgggaggcttcaactgatc |
54292831 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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