View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3428_high_8 (Length: 349)
Name: NF3428_high_8
Description: NF3428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3428_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 135; Significance: 3e-70; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 165 - 331
Target Start/End: Original strand, 54821952 - 54822119
Alignment:
| Q |
165 |
tggagagacattataagtgggaccaaagnnnnnnn-gtaaggaagtgggaccaaagttgtgttttgagagaagagagtaaagtgggagcctggaggcagc |
263 |
Q |
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| T |
54821952 |
tggagagacattataagtgggaccaaagttttttttggaaggaagtgggaccaaagttgtgttttgagagaagagagtaaagtgggagcctggaggcagc |
54822051 |
T |
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| Q |
264 |
aaaagcaaacattgaagaggtagagtcccaaacgggtttgctcacaagaaacaaaccgtcccaaacac |
331 |
Q |
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| T |
54822052 |
aaaagcaaacattgaagaggtagagtcccaaacgggtttgctcacaagaaacaaaccgtcccaaacac |
54822119 |
T |
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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 46 - 81
Target Start/End: Original strand, 54821831 - 54821866
Alignment:
| Q |
46 |
aacaaaacttgatgtaataaaacttttgaaaatata |
81 |
Q |
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|||||||||||||||||||||| ||||||||||||| |
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| T |
54821831 |
aacaaaacttgatgtaataaaaattttgaaaatata |
54821866 |
T |
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