View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3428_low_1 (Length: 647)
Name: NF3428_low_1
Description: NF3428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3428_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 608; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 608; E-Value: 0
Query Start/End: Original strand, 17 - 636
Target Start/End: Complemental strand, 20922402 - 20921783
Alignment:
| Q |
17 |
actcagttcgtctctacatactaatattccataactgcctcataccacggtcctagccttcaacgtaatccgttctttattcttagttaattttccgctg |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20922402 |
actcagttcgtctctacatactaatattccataactgcctcataccacggtcctagccttcaacgtaatccgttctttattcttagttaattttccgctg |
20922303 |
T |
|
| Q |
117 |
cgcaactttgatttatcaacttacttcatccagtacactagttcaactataccgaagaattccacgattaacttaactttgttatgatttcacaaccatc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20922302 |
cgcaactttgatttatcaacttacttcatccagtacactagttcaactataccgaagaattccacgattaacttaactttgttatgatttcacaaccatc |
20922203 |
T |
|
| Q |
217 |
aagccgaaaatcactctatgacatgctacttattttcaatctgattactaccatttatccaaactcacttctcctacggttctagaagaattaagtcttc |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
20922202 |
aagccgaaaatcactctatgacatgctacttattttcaatctgattactaccatttatccaaactcacttctcctatggttctagaagaattaagtcttc |
20922103 |
T |
|
| Q |
317 |
cgacttacatgctaataacaaggaggttaacttcattctacatgctgctttgaaacaccaacttatatcaccgaggagtcacttctagttatcacatttt |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
20922102 |
cgacttacatgctaataacaaggaggttaacttcattctacatgctgctttgaaacaccaacttatatcaccgaggagtcacttctagttatcgcatttt |
20922003 |
T |
|
| Q |
417 |
cctttggagatatactaataacttgacggtttgagacttaactccatctaatccattcttgtacgtagttgtattcatacttacgttctattctgggaca |
516 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20922002 |
cctttggagatatactaataacttgacggtttgagacttaactccatctaatccattcttgtacgtagttgtattcatacttacgttctattctgggaca |
20921903 |
T |
|
| Q |
517 |
gcctcggtttccacaattcagtccagtcaatatagtcactcttttggatttcaaaacaaatgtgcaagcagatccatcgactgaaaatatacaactcttt |
616 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
20921902 |
gcctcggtttccacaattcagtccagtcaatatagtcactcttttggatttcaaaacaaatgtgcaagcagatccatcgactgaaaatatacaactcctt |
20921803 |
T |
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| Q |
617 |
aacactttactacattctct |
636 |
Q |
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|||||||||||||||||||| |
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| T |
20921802 |
aacactttactacattctct |
20921783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 438 - 534
Target Start/End: Original strand, 24533285 - 24533380
Alignment:
| Q |
438 |
cttgacggtttgagacttaactccatctaatccattcttgtacgtagttgtattcatacttacgttctattctgggacagcctcggtttccacaatt |
534 |
Q |
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||||| ||||||||||||| |||| |||||||||||||| ||||||| |||||| ||||||| ||| || ||||||| ||| | ||||||||||| |
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| T |
24533285 |
cttgatggtttgagacttacttccaattaatccattcttgtccgtagttatattcacacttacggtctcttatgggacaacct-gctttccacaatt |
24533380 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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