View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3428_low_11 (Length: 311)
Name: NF3428_low_11
Description: NF3428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3428_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 159 - 248
Target Start/End: Original strand, 6451263 - 6451351
Alignment:
| Q |
159 |
ttcacaattcttgacttctcaacactttatatgcatgtgtgaattaaaaagaaaaatatatagttatgtatgacattggttaatggttga |
248 |
Q |
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| T |
6451263 |
ttcacaattcttgacttctcaaaactttatatatatgtgtgaattaaaa-gaaaaatatatagttatgtatgacattggttaatggttga |
6451351 |
T |
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Target: chr1; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 25 - 80
Target Start/End: Original strand, 6451207 - 6451262
Alignment:
| Q |
25 |
gttgttatacctaaatccaacatccaaaattttatttagatttatctcatgataaa |
80 |
Q |
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| T |
6451207 |
gttgttatacctaaatccagcatccaaaattttatttagatttatctcatgataaa |
6451262 |
T |
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