View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3428_low_14 (Length: 263)

Name: NF3428_low_14
Description: NF3428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3428_low_14
NF3428_low_14
[»] chr3 (13 HSPs)
chr3 (17-261)||(47527572-47527816)
chr3 (98-190)||(47522188-47522280)
chr3 (28-172)||(47522319-47522454)
chr3 (44-158)||(47527800-47527911)
chr3 (106-240)||(47527793-47527927)
chr3 (44-219)||(47527932-47528104)
chr3 (44-191)||(47527866-47528010)
chr3 (63-165)||(47527549-47527651)
chr3 (44-187)||(47522203-47522343)
chr3 (89-172)||(47528040-47528123)
chr3 (91-157)||(47527376-47527442)
chr3 (95-155)||(47549751-47549811)
chr3 (32-98)||(47522257-47522323)
[»] chr7 (5 HSPs)
chr7 (28-159)||(44871973-44872104)
chr7 (44-248)||(44871950-44872154)
chr7 (24-205)||(44871861-44872039)
chr7 (109-177)||(44872090-44872158)
chr7 (103-197)||(44872202-44872296)


Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 17 - 261
Target Start/End: Original strand, 47527572 - 47527816
Alignment:
Q  17 agaagtgacaacaacatcaatatattggtctccattacagtcgaatgagcaactgagagaatccgtggaagcagcagcaacaacaacaatttctttgtct 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47527572 agaagtgacaacaacatcaatatattggtctccattacagtcgaatgagcaactgagagaatccgtggaagcagcagcaacaacaacaatttctttgtct 47527671  T
Q  117 ccattacagtcgaaagagcgatcgagagaatctgaggaagcagcagcaatatcaatatattcatctccattacagctgaaagtgcaaccgaaggaatccg 216  Q
    |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47527672 ccattacagtcgaaagagcgactgagagaatctgaggaagcagcagcaatatcaatatattcatctccattacagctgaaagtgcaaccgaaggaatccg 47527771  T
Q  217 aggtatcagtagcaagaggattttctttgtcttcatctcactcga 261  Q
    |||||||||||||||||||||||||||||||| ||| ||| ||||    
T  47527772 aggtatcagtagcaagaggattttctttgtctccatttcagtcga 47527816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 98 - 190
Target Start/End: Original strand, 47522188 - 47522280
Alignment:
Q  98 aacaacaatttctttgtctccattacagtcgaaagagcgatcgagagaatctgaggaagcagcagcaatatcaatatattcatctccattaca 190  Q
    ||||||||||||| |||||||||| ||||||||| || || ||||||||||||||||| |||||||||||||||| ||||| ||||| |||||    
T  47522188 aacaacaatttctctgtctccattgcagtcgaaaaagagaccgagagaatctgaggaaacagcagcaatatcaatttattcgtctcctttaca 47522280  T

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Target: chr3; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 28 - 172
Target Start/End: Original strand, 47522319 - 47522454
Alignment:
Q  28 caacatcaatatattggtctccattacagtcgaatgagcaactgagagaatccgtggaagcagcagcaacaacaacaatttctttgtctccattacagtc 127  Q
    |||||||||| |||||||||||||| | |||||| ||| ||||||||||||||| ||| | ||||||| |||| ||||||||||||||||||||          
T  47522319 caacatcaatctattggtctccattgccgtcgaaagagaaactgagagaatccgaggaggaagcagcagcaactacaatttctttgtctccatt------ 47522412  T
Q  128 gaaagagcgatcgagagaatctgaggaagcagcagcaatatcaat 172  Q
       | ||||| |||| ||||| |||||||||||||||||||||||    
T  47522413 ---aaagcgaccgagtgaatccgaggaagcagcagcaatatcaat 47522454  T

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Target: chr3; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 44 - 158
Target Start/End: Original strand, 47527800 - 47527911
Alignment:
Q  44 gtctccattacagtcgaatgagcaactgagagaatccgtggaagcagcagcaacaacaacaatttctttgtctccattacagtcgaaagagcgatcgaga 143  Q
    ||||||||| ||||||| ||||| |||||||| ||| |  ||||||||||||||   ||||||||||| |||||||||||||| |||||||| | |||||    
T  47527800 gtctccatttcagtcgattgagcgactgagagcatctgatgaagcagcagcaac---aacaatttcttcgtctccattacagttgaaagagcaaccgaga 47527896  T
Q  144 gaatctgaggaagca 158  Q
    |||||||||||||||    
T  47527897 gaatctgaggaagca 47527911  T

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Target: chr3; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 106 - 240
Target Start/End: Original strand, 47527793 - 47527927
Alignment:
Q  106 tttctttgtctccattacagtcgaaagagcgatcgagagaatctgaggaagcagcagcaatatcaatatattcatctccattacagctgaaagtgcaacc 205  Q
    |||||||||||||||| |||||||  ||||||  ||||| |||||| ||||||||||||| | |||| | ||| |||||||||||| |||||| ||||||    
T  47527793 tttctttgtctccatttcagtcgattgagcgactgagagcatctgatgaagcagcagcaacaacaatttcttcgtctccattacagttgaaagagcaacc 47527892  T
Q  206 gaaggaatccgaggtatcagtagcaagaggatttt 240  Q
    ||  ||||| |||| | || ||| ||||| |||||    
T  47527893 gagagaatctgaggaagcattagtaagagcatttt 47527927  T

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Target: chr3; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 44 - 219
Target Start/End: Original strand, 47527932 - 47528104
Alignment:
Q  44 gtctccattacagtcgaatgagcaactgagagaatccgtggaagcagcagcaacaacaacaatttctttgtctccattacagtcgaaagagcgatcgaga 143  Q
    |||||||||||||||||| |||| |||| |||||| || ||||||||||||||||  ||   ||| || || ||||||||||   ||||||| || ||||    
T  47527932 gtctccattacagtcgaaagagcgactgcgagaatgcgaggaagcagcagcaacattaa---tttattcgtttccattacagataaaagagcaatggaga 47528028  T
Q  144 gaatctgaggaagcagcagcaatatcaatatattcatctccattacagctgaaagtgcaaccgaaggaatccgagg 219  Q
    |||||||| ||||||||| ||| | |||| | |   ||||||||||||| ||||  |||||| || ||||||||||    
T  47528029 gaatctgatgaagcagcatcaaaaacaatttctctgtctccattacagccgaaaaagcaaccaaatgaatccgagg 47528104  T

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Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 44 - 191
Target Start/End: Original strand, 47527866 - 47528010
Alignment:
Q  44 gtctccattacagtcgaatgagcaactgagagaatccgtggaagcagcagcaacaacaacaatttctttgtctccattacagtcgaaagagcgatcgaga 143  Q
    |||||||||||||| ||| ||||||| ||||||||| | |||||||  || || | ||    |||  |||||||||||||||||||||||||||  | ||    
T  47527866 gtctccattacagttgaaagagcaaccgagagaatctgaggaagcattagtaagagcat---tttacttgtctccattacagtcgaaagagcgactgcga 47527962  T
Q  144 gaatctgaggaagcagcagcaatatcaatatattcatctccattacag 191  Q
    ||||  |||||||||||||||| || ||| ||||| | ||||||||||    
T  47527963 gaatgcgaggaagcagcagcaacattaatttattcgtttccattacag 47528010  T

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Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 63 - 165
Target Start/End: Original strand, 47527549 - 47527651
Alignment:
Q  63 gagcaactgagagaatccgtggaagcagcagcaacaacaacaatttctttgtctccattacagtcgaaagagcgatcgagagaatctgaggaagcagcag 162  Q
    ||||||| ||||||||||| ||||| ||   |||||||| |||| | || |||||||||||||||||| |||| |  ||||||||| | |||||||||||    
T  47527549 gagcaaccgagagaatccgaggaagaagtgacaacaacatcaatatattggtctccattacagtcgaatgagcaactgagagaatccgtggaagcagcag 47527648  T
Q  163 caa 165  Q
    |||    
T  47527649 caa 47527651  T

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Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 44 - 187
Target Start/End: Original strand, 47522203 - 47522343
Alignment:
Q  44 gtctccattacagtcgaatgagcaactgagagaatccgtggaagcagcagcaacaacaacaatttctttgtctccattacagtcgaaagagcgatcgaga 143  Q
    ||||||||| ||||||||  ||  || ||||||||| | |||| ||||||||| | |||   ||| || |||||| ||||| |||||||||| | |||||    
T  47522203 gtctccattgcagtcgaaaaagagaccgagagaatctgaggaaacagcagcaatatcaa---tttattcgtctcctttacaatcgaaagagctaccgaga 47522299  T
Q  144 gaatctgaggaagcagcagcaatatcaatatattcatctccatt 187  Q
    |||||  ||||||||||||||| |||||| ||||  ||||||||    
T  47522300 gaatcccaggaagcagcagcaacatcaatctattggtctccatt 47522343  T

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Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 89 - 172
Target Start/End: Original strand, 47528040 - 47528123
Alignment:
Q  89 agcagcaacaacaacaatttctttgtctccattacagtcgaaagagcgatcgagagaatctgaggaagcagcagcaatatcaat 172  Q
    ||||||| ||| |||||||||| |||||||||||||| ||||| ||| | | |  ||||| |||||||||||||||||| ||||    
T  47528040 agcagcatcaaaaacaatttctctgtctccattacagccgaaaaagcaaccaaatgaatccgaggaagcagcagcaatagcaat 47528123  T

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Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 91 - 157
Target Start/End: Original strand, 47527376 - 47527442
Alignment:
Q  91 cagcaacaacaacaatttctttgtctccattacagtcgaaagagcgatcgagagaatctgaggaagc 157  Q
    ||||| |||||| ||||||||||||||||| |||||||||| ||||  | |||||||| ||||||||    
T  47527376 cagcagcaacaataatttctttgtctccatcacagtcgaaaaagcgtcctagagaatccgaggaagc 47527442  T

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Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 155
Target Start/End: Original strand, 47549751 - 47549811
Alignment:
Q  95 aacaacaacaatttctttgtctccattacagtcgaaagagcgatcgagagaatctgaggaa 155  Q
    |||||||||||||||||  |||||||||||||| ||||| ||  | |||||||||||||||    
T  47549751 aacaacaacaatttcttcatctccattacagtcaaaagatcgcccaagagaatctgaggaa 47549811  T

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Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 98
Target Start/End: Original strand, 47522257 - 47522323
Alignment:
Q  32 atcaatatattggtctccattacagtcgaatgagcaactgagagaatccgtggaagcagcagcaaca 98  Q
    |||||| |||| |||||| ||||| ||||| |||| || ||||||||||  ||||||||||||||||    
T  47522257 atcaatttattcgtctcctttacaatcgaaagagctaccgagagaatcccaggaagcagcagcaaca 47522323  T

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Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 28 - 159
Target Start/End: Complemental strand, 44872104 - 44871973
Alignment:
Q  28 caacatcaatatattggtctccattacagtcgaatgagcaactgagagaatccgtggaagcagcagcaacaacaacaatttctttgtctccattacagtc 127  Q
    |||||||||| |||| | |||| ||||||||||| |||||||||||| |||||| |||||||||| |||||||| |||||||||  |||||||||||||     
T  44872104 caacatcaatttatttgcctcctttacagtcgaaagagcaactgagaaaatccgaggaagcagcaacaacaacagcaatttcttcttctccattacagtt 44872005  T
Q  128 gaaagagcgatcgagagaatctgaggaagcag 159  Q
    ||||| || | |||||||||| ||||||||||    
T  44872004 gaaagtgcaaccgagagaatccgaggaagcag 44871973  T

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Target: chr7; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 44 - 248
Target Start/End: Complemental strand, 44872154 - 44871950
Alignment:
Q  44 gtctccattacagtcgaatgagcaactgagagaatccgtggaagcagcagcaacaacaacaatttctttgtctccattacagtcgaaagagcgatcgaga 143  Q
    |||| ||||||||||||| |||| || | ||||||||| |||| ||||||||||| |||   ||| |||| |||| |||||||||||||||| |  ||||    
T  44872154 gtctgcattacagtcgaaggagcgaccgggagaatccgaggaaacagcagcaacatcaa---tttatttgcctcctttacagtcgaaagagcaactgaga 44872058  T
Q  144 gaatctgaggaagcagcagcaatatca---atatattcatctccattacagctgaaagtgcaaccgaaggaatccgaggtatcagtagcaagaggatttt 240  Q
     |||| |||||||||||| ||| | ||   || | ||| |||||||||||| |||||||||||||||  |||||||||| | ||||||| |||| |||||    
T  44872057 aaatccgaggaagcagcaacaacaacagcaatttcttcttctccattacagttgaaagtgcaaccgagagaatccgaggaagcagtagctagagcatttt 44871958  T
Q  241 ctttgtct 248  Q
    ||||||||    
T  44871957 ctttgtct 44871950  T

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Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 24 - 205
Target Start/End: Complemental strand, 44872039 - 44871861
Alignment:
Q  24 acaacaacatcaatatattggtctccattacagtcgaatgagcaactgagagaatccgtggaagcagcagcaacaacaacaatttctttgtctccattac 123  Q
    ||||||||| |||| | ||  ||||||||||||| ||| | ||||| ||||||||||| |||||||| ||| | | ||    ||||||||||||||||||    
T  44872039 acaacaacagcaatttcttcttctccattacagttgaaagtgcaaccgagagaatccgaggaagcagtagctagagcat---tttctttgtctccattac 44871943  T
Q  124 agtcgaaagagcgatcgagagaatctgaggaagcagcagcaatatcaatatattcatctccattacagctgaaagtgcaacc 205  Q
    ||||||||||| ||  || ||||||  |||||| |||||||  |||||| ||||| |||| ||||||  |||||| ||||||    
T  44871942 agtcgaaagagagactgaaagaatccaaggaagaagcagcagcatcaatttattcttctcaattacatttgaaagagcaacc 44871861  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 109 - 177
Target Start/End: Complemental strand, 44872158 - 44872090
Alignment:
Q  109 ctttgtctccattacagtcgaaagagcgatcgagagaatctgaggaagcagcagcaatatcaatatatt 177  Q
    |||||||| ||||||||||||| |||||| || ||||||| |||||| ||||||||| |||||| ||||    
T  44872158 ctttgtctgcattacagtcgaaggagcgaccgggagaatccgaggaaacagcagcaacatcaatttatt 44872090  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 197
Target Start/End: Complemental strand, 44872296 - 44872202
Alignment:
Q  103 caatttctttgtctccattacagtcgaaagagcgatcgagagaatctgaggaagcagcagcaatatcaatatattcatctccattacagctgaaa 197  Q
    ||||||||| |||||||||| ||| |||| ||||||||||||||||  | ||| ||||||||  | |||| | ||| ||| |||||||| |||||    
T  44872296 caatttcttcgtctccattagagttgaaaaagcgatcgagagaatcccatgaaacagcagcagcaacaattttttcctctgcattacagttgaaa 44872202  T

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