View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3428_low_16 (Length: 258)

Name: NF3428_low_16
Description: NF3428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3428_low_16
NF3428_low_16
[»] chr3 (8 HSPs)
chr3 (1-248)||(47527933-47528180)
chr3 (1-78)||(47527669-47527746)
chr3 (1-243)||(47522270-47522506)
chr3 (1-111)||(47527801-47527911)
chr3 (93-177)||(47527827-47527911)
chr3 (108-191)||(47527644-47527727)
chr3 (120-191)||(47522191-47522262)
chr3 (1-114)||(47527600-47527716)
[»] chr7 (3 HSPs)
chr7 (1-104)||(44871849-44871952)
chr7 (5-178)||(44871973-44872149)
chr7 (2-183)||(44871902-44872086)


Alignment Details
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 47527933 - 47528180
Alignment:
Q  1 tctccattacagtcgaaagagcgactgcgagaatgcaaggaagcagcagcaacattaatttattcgtttccattacagataaaagagcaatggagagaat 100  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47527933 tctccattacagtcgaaagagcgactgcgagaatgcgaggaagcagcagcaacattaatttattcgtttccattacagataaaagagcaatggagagaat 47528032  T
Q  101 ctgatgaagcagcatcaaaaacaatttctctgtctccattactgtcgaaaaagcaaccaaatgaatccgaggaagcagcagcaatagcaatgtctttgaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47528033 ctgatgaagcagcatcaaaaacaatttctctgtctccattacagccgaaaaagcaaccaaatgaatccgaggaagcagcagcaatagcaatgtctttgaa 47528132  T
Q  201 atcctttgaatttacttctaatgaggattctgaagcctctagtttcat 248  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  47528133 atcctttgaatttacttctaatgaggattctgaagcctctagtttcat 47528180  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 47527669 - 47527746
Alignment:
Q  1 tctccattacagtcgaaagagcgactgcgagaatgcaaggaagcagcagcaacattaatttattcgtttccattacag 78  Q
    ||||||||||||||||||||||||||| ||||||   ||||||||||||||| || ||| ||||| | ||||||||||    
T  47527669 tctccattacagtcgaaagagcgactgagagaatctgaggaagcagcagcaatatcaatatattcatctccattacag 47527746  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 47522270 - 47522506
Alignment:
Q  1 tctccattacagtcgaaagagcgactgcgagaatgcaaggaagcagcagcaacattaatttattcgtttccattacagataaaagagcaatggagagaat 100  Q
    ||||| ||||| |||||||||| || | |||||| | |||||||||||||||||| ||| |||| || |||||| | |   |||||| ||  ||||||||    
T  47522270 tctcctttacaatcgaaagagctaccgagagaatcccaggaagcagcagcaacatcaatctattggtctccattgccgtcgaaagagaaactgagagaat 47522369  T
Q  101 ctgatga---agcagcatcaaaaacaatttctctgtctccattactgtcgaaaaagcaaccaaatgaatccgaggaagcagcagcaatagcaatgtcttt 197  Q
    | || ||   ||||||| |||  ||||||||| |||||||||||         |||| ||| | ||||||||||||||||||||||||| |||| ||||     
T  47522370 ccgaggaggaagcagcagcaactacaatttctttgtctccatta---------aagcgaccgagtgaatccgaggaagcagcagcaatatcaatttcttc 47522460  T
Q  198 gaaatcctttgaatttacttctaatgaggattctgaagcctctagt 243  Q
      ||||   |||||  |||||| |||| ||||||||||||||||||    
T  47522461 tgaatcagatgaatcaacttctgatgacgattctgaagcctctagt 47522506  T

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Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 47527801 - 47527911
Alignment:
Q  1 tctccattacagtcgaaagagcgactgcgagaatgcaaggaagcagcagcaacattaatttattcgtttccattacagataaaagagcaatggagagaat 100  Q
    |||||||| |||||||  ||||||||| ||| ||   | |||||||||||||||  ||||| ||||| |||||||||| | |||||||||  ||||||||    
T  47527801 tctccatttcagtcgattgagcgactgagagcatctgatgaagcagcagcaacaacaatttcttcgtctccattacagttgaaagagcaaccgagagaat 47527900  T
Q  101 ctgatgaagca 111  Q
    |||| ||||||    
T  47527901 ctgaggaagca 47527911  T

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Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 93 - 177
Target Start/End: Original strand, 47527827 - 47527911
Alignment:
Q  93 gagagaatctgatgaagcagcatcaaaaacaatttctctgtctccattactgtcgaaaaagcaaccaaatgaatccgaggaagca 177  Q
    ||||| |||||||||||||||| ||| ||||||||||  ||||||||||| || |||| ||||||| |  ||||| |||||||||    
T  47527827 gagagcatctgatgaagcagcagcaacaacaatttcttcgtctccattacagttgaaagagcaaccgagagaatctgaggaagca 47527911  T

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Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 108 - 191
Target Start/End: Original strand, 47527644 - 47527727
Alignment:
Q  108 agcagcatcaaaaacaatttctctgtctccattactgtcgaaaaagcaaccaaatgaatccgaggaagcagcagcaatagcaat 191  Q
    ||||||| ||| |||||||||| |||||||||||| ||||||| ||| ||  |  ||||| |||||||||||||||||| ||||    
T  47527644 agcagcaacaacaacaatttctttgtctccattacagtcgaaagagcgactgagagaatctgaggaagcagcagcaatatcaat 47527727  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 120 - 191
Target Start/End: Original strand, 47522191 - 47522262
Alignment:
Q  120 aacaatttctctgtctccattactgtcgaaaaagcaaccaaatgaatccgaggaagcagcagcaatagcaat 191  Q
    ||||||||||||||||||||| | ||||||||||  ||| |  ||||| |||||| ||||||||||| ||||    
T  47522191 aacaatttctctgtctccattgcagtcgaaaaagagaccgagagaatctgaggaaacagcagcaatatcaat 47522262  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 47527600 - 47527716
Alignment:
Q  1 tctccattacagtcgaaagagcgactgcgagaatgcaaggaagcagcagcaacattaa---tttattcgtttccattacagataaaagagcaatggagag 97  Q
    ||||||||||||||||| |||| |||| |||||| |  ||||||||||||||||  ||   ||| || || ||||||||||   ||||||| |  |||||    
T  47527600 tctccattacagtcgaatgagcaactgagagaatccgtggaagcagcagcaacaacaacaatttctttgtctccattacagtcgaaagagcgactgagag 47527699  T
Q  98 aatctgatgaagcagca 114  Q
    ||||||| |||||||||    
T  47527700 aatctgaggaagcagca 47527716  T

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Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 44871952 - 44871849
Alignment:
Q  1 tctccattacagtcgaaagagcgactgcgagaatgcaaggaagcagcagcaacattaatttattcgtttccattacagataaaagagcaatggagagaat 100  Q
    ||||||||||||||||||||| |||||  ||||| |||||||| ||||||| ||| ||||||||| | || ||||||  | |||||||||   |||||||    
T  44871952 tctccattacagtcgaaagagagactgaaagaatccaaggaagaagcagcagcatcaatttattcttctcaattacatttgaaagagcaacccagagaat 44871853  T
Q  101 ctga 104  Q
    ||||    
T  44871852 ctga 44871849  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 178
Target Start/End: Complemental strand, 44872149 - 44871973
Alignment:
Q  5 cattacagtcgaaagagcgactgcgagaatgcaaggaagcagcagcaacattaatttattcgtttccattacagataaaagagcaatggagagaatctga 104  Q
    ||||||||||||| ||||||| | |||||| | ||||| |||||||||||| |||||||| |  ||| ||||||   |||||||||  |||| |||| ||    
T  44872149 cattacagtcgaaggagcgaccgggagaatccgaggaaacagcagcaacatcaatttatttgcctcctttacagtcgaaagagcaactgagaaaatccga 44872050  T
Q  105 tgaagcagcatcaaaaa---caatttctctgtctccattactgtcgaaaaagcaaccaaatgaatccgaggaagcag 178  Q
     ||||||||| ||| ||   ||||||||   |||||||||| || ||||  |||||| |  ||||||||||||||||    
T  44872049 ggaagcagcaacaacaacagcaatttcttcttctccattacagttgaaagtgcaaccgagagaatccgaggaagcag 44871973  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 183
Target Start/End: Complemental strand, 44872086 - 44871902
Alignment:
Q  2 ctccattacagtcgaaagagcgactgcgagaatgcaaggaagcagcagcaacatta---atttattcgtttccattacagataaaagagcaatggagaga 98  Q
    |||| |||||||||||||||| |||| || ||| | ||||||||||| |||||  |   |||| ||| | |||||||||| | |||| ||||  ||||||    
T  44872086 ctcctttacagtcgaaagagcaactgagaaaatccgaggaagcagcaacaacaacagcaatttcttcttctccattacagttgaaagtgcaaccgagaga 44871987  T
Q  99 atctgatgaagcagcatcaaaaacaatttctctgtctccattactgtcgaaaaagcaaccaaatgaatccgaggaagcagcagca 183  Q
    ||| || ||||||| | | | | || ||||| |||||||||||| ||||||| ||  ||  || |||||| |||||| |||||||    
T  44871986 atccgaggaagcagtagctagagcattttctttgtctccattacagtcgaaagagagactgaaagaatccaaggaagaagcagca 44871902  T

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