View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3428_low_17 (Length: 248)

Name: NF3428_low_17
Description: NF3428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3428_low_17
NF3428_low_17
[»] chr3 (14 HSPs)
chr3 (1-244)||(967750-968003)
chr3 (111-213)||(1931903-1932005)
chr3 (111-224)||(3745169-3745282)
chr3 (76-216)||(955518-955653)
chr3 (111-204)||(2651170-2651263)
chr3 (111-207)||(1937720-1937816)
chr3 (111-207)||(3753785-3753881)
chr3 (111-207)||(4142892-4142988)
chr3 (111-225)||(7432821-7432935)
chr3 (112-230)||(13478821-13478939)
chr3 (111-208)||(1891803-1891900)
chr3 (111-207)||(4158702-4158798)
chr3 (111-214)||(1941324-1941427)
chr3 (10-68)||(955440-955498)
[»] chr8 (2 HSPs)
chr8 (111-214)||(19727118-19727221)
chr8 (112-225)||(31145142-31145255)
[»] chr5 (8 HSPs)
chr5 (114-228)||(23764991-23765105)
chr5 (114-228)||(23814839-23814953)
chr5 (114-207)||(23774825-23774918)
chr5 (114-207)||(23861778-23861871)
chr5 (114-207)||(23754791-23754884)
chr5 (114-207)||(23820246-23820339)
chr5 (114-228)||(23691163-23691277)
chr5 (111-207)||(11081380-11081476)
[»] chr4 (1 HSPs)
chr4 (112-228)||(20020524-20020640)


Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 967750 - 968003
Alignment:
Q  1 aagcaaaatacgacgacgccgtttcttctccattactgaccgaagcaataatctccattgagaggaggccaactgaaaccctaacatcatcaccatcgct 100  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  967750 aagcaaaatacgacgatgccgtttcttctccattactgaccgaagcagcaatctccattgagaggaggccaactgaaaccctaacatcgtcaccatcgct 967849  T
Q  101 tcacatgccgc----------tcttcctttcgatctcattccagaaattctatgtaggctatcggtaaagctcctcatgcaattccgatgtgtgtgcaag 190  Q
    |||||||||||          |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  967850 tcacatgccgccacttccgactcttcctttcgatctcattccagaaattctatgtaggctatcggtaaagctcctcatgcaattccgatgtgtgtgcaag 967949  T
Q  191 tcgtggaattctctaatcactgattctaaatttgccaacattcacctttgcttc 244  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  967950 tcgtggaattctctaatcactgattctaaatttgccaacattcaccttcgcttc 968003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 111 - 213
Target Start/End: Complemental strand, 1932005 - 1931903
Alignment:
Q  111 ctcttcctttcgatctcattccagaaattctatgtaggctatcggtaaagctcctcatgcaattccgatgtgtgtgcaagtcgtggaattctctaatcac 210  Q
    |||||||||||||||||||||||||||| || ||||||||||| || ||||||||  ||  |||||| || || |||||||| | ||||||||||||| |    
T  1932005 ctcttcctttcgatctcattccagaaatcctctgtaggctatccgtgaagctccttgtgagattccggtgcgtttgcaagtcatagaattctctaatctc 1931906  T
Q  211 tga 213  Q
    |||    
T  1931905 tga 1931903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 111 - 224
Target Start/End: Original strand, 3745169 - 3745282
Alignment:
Q  111 ctcttcctttcgatctcattccagaaattctatgtaggctatcggtaaagctcctcatgcaattccgatgtgtgtgcaagtcgtggaattctctaatcac 210  Q
    ||||||||| |||  |||||||||||||  ||||||||||| |||| ||| || || | |||||||||||||| |||||||| ||||||||||||||  |    
T  3745169 ctcttccttccgacgtcattccagaaatcttatgtaggctaccggtgaagttcatccttcaattccgatgtgtttgcaagtcatggaattctctaatatc 3745268  T
Q  211 tgattctaaatttg 224  Q
    |||| | |||||||    
T  3745269 tgatcccaaatttg 3745282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 76 - 216
Target Start/End: Original strand, 955518 - 955653
Alignment:
Q  76 aaaccctaacatcatcaccatcgcttcacatgccgctcttcctttcgatctcattccagaaattctatgtaggctatcggtaaagctcctcatgcaattc 175  Q
    |||||||||||||||||||||| |||| |||     ||||||||| |||||| || ||||||| || |||||||||  ||||||||||||| | ||| |     
T  955518 aaaccctaacatcatcaccatcacttcccat-----tcttccttttgatctcgtttcagaaatcctctgtaggctacaggtaaagctcctccttcaactt 955612  T
Q  176 cgatgtgtgtgcaagtcgtggaattctctaatcactgattc 216  Q
    ||||| || || ||||| ||||||||||| ||| |||||||    
T  955613 cgatgcgtttgtaagtcttggaattctcttatctctgattc 955653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 111 - 204
Target Start/End: Complemental strand, 2651263 - 2651170
Alignment:
Q  111 ctcttcctttcgatctcattccagaaattctatgtaggctatcggtaaagctcctcatgcaattccgatgtgtgtgcaagtcgtggaattctct 204  Q
    ||||||||||||| || |||| |||||||||| ||||| || |||||||||||||| | ||| | |||||||| |||||| | |||||||||||    
T  2651263 ctcttcctttcgaccttattcaagaaattctacgtaggttaccggtaaagctcctctttcaacttcgatgtgtctgcaagccatggaattctct 2651170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 111 - 207
Target Start/End: Complemental strand, 1937816 - 1937720
Alignment:
Q  111 ctcttcctttcgatctcattccagaaattctatgtaggctatcggtaaagctcctcatgcaattccgatgtgtgtgcaagtcgtggaattctctaat 207  Q
    |||||||||| ||||||||||||||||| || | |||||||||||| || |||||| ||  |||||| || || |||||||| | ||||||||||||    
T  1937816 ctcttccttttgatctcattccagaaatcctctctaggctatcggtgaaactcctcctgagattccggtgcgtttgcaagtcatagaattctctaat 1937720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 111 - 207
Target Start/End: Original strand, 3753785 - 3753881
Alignment:
Q  111 ctcttcctttcgatctcattccagaaattctatgtaggctatcggtaaagctcctcatgcaattccgatgtgtgtgcaagtcgtggaattctctaat 207  Q
    ||||||||| |||  ||||||||||||| ||||||||| || |||||||| || || | | |||||||||||| |||||||| ||||||| ||||||    
T  3753785 ctcttccttacgacgtcattccagaaatcctatgtaggttaccggtaaagttcatccttcgattccgatgtgtttgcaagtcatggaattttctaat 3753881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 111 - 207
Target Start/End: Complemental strand, 4142988 - 4142892
Alignment:
Q  111 ctcttcctttcgatctcattccagaaattctatgtaggctatcggtaaagctcctcatgcaattccgatgtgtgtgcaagtcgtggaattctctaat 207  Q
    ||||||||| |||  |||||||||||||  ||||||||||| | |||||| || || | | |||||||||||| |||||||| ||||||||||||||    
T  4142988 ctcttccttccgacgtcattccagaaatcatatgtaggctaccagtaaagttcatccttcgattccgatgtgtttgcaagtcatggaattctctaat 4142892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 111 - 225
Target Start/End: Complemental strand, 7432935 - 7432821
Alignment:
Q  111 ctcttcctttcgatctcattccagaaattctatgtaggctatcggtaaagctcctcatgcaattccgatgtgtgtgcaagtcgtggaattctctaatcac 210  Q
    |||||||||||||||||||| ||||||| || | ||||||  |||| ||||| ||| | ||||| |||||  | |||||||||||||||||||| ||| |    
T  7432935 ctcttcctttcgatctcattacagaaatactctctaggcttccggtgaagcttctccttcaattgcgatgcatctgcaagtcgtggaattctctgatctc 7432836  T
Q  211 tgattctaaatttgc 225  Q
    | |||| || |||||    
T  7432835 taattccaattttgc 7432821  T

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Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 112 - 230
Target Start/End: Original strand, 13478821 - 13478939
Alignment:
Q  112 tcttcctttcgatctcattccagaaattctatgtaggctatcggtaaagctcctcatgcaattccgatgtgtgtgcaagtcgtggaattctctaatcact 211  Q
    ||||||| |||| ||||||  ||||||||||||||||||| | || ||||||||| | ||| | ||||||||  | |||| |||||||||| | ||||||    
T  13478821 tcttcctctcgacctcattatagaaattctatgtaggctacccgtgaagctcctccttcaacttcgatgtgtcagtaagttgtggaattcttttatcact 13478920  T
Q  212 gattctaaatttgccaaca 230  Q
    |||   |||||||||||||    
T  13478921 gatcgcaaatttgccaaca 13478939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 111 - 208
Target Start/End: Complemental strand, 1891900 - 1891803
Alignment:
Q  111 ctcttcctttcgatctcattccagaaattctatgtaggctatcggtaaagctcctcatgcaattccgatgtgtgtgcaagtcgtggaattctctaatc 208  Q
    |||||||||| ||||||||| |||||||||||  ||| ||  | || ||||||||| | ||| |||||| ||| |||||||| |||||||||||||||    
T  1891900 ctcttcctttggatctcatttcagaaattctaactagacttccagtgaagctcctccttcaactccgatctgtctgcaagtcatggaattctctaatc 1891803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 111 - 207
Target Start/End: Complemental strand, 4158798 - 4158702
Alignment:
Q  111 ctcttcctttcgatctcattccagaaattctatgtaggctatcggtaaagctcctcatgcaattccgatgtgtgtgcaagtcgtggaattctctaat 207  Q
    ||||||||| |||  |||||| ||||||  ||||||||||| |||||||| || || | | ||||| |||||| |||||||| ||||||||||||||    
T  4158798 ctcttccttccgacgtcattctagaaatcatatgtaggctaccggtaaagttcatcctccgattccaatgtgtttgcaagtcatggaattctctaat 4158702  T

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Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 111 - 214
Target Start/End: Complemental strand, 1941427 - 1941324
Alignment:
Q  111 ctcttcctttcgatctcattccagaaattctatgtaggctatcggtaaagctcctcatgcaattccgatgtgtgtgcaagtcgtggaattctctaatcac 210  Q
    |||||||||| ||||||||  |||| || || ||||| ||  | || ||||| ||| | |||||||| || || |||||||||||||||||||| |||||    
T  1941427 ctcttcctttggatctcatctcagagatcctctgtagactccccgtgaagcttctccttcaattccggtgcgtttgcaagtcgtggaattctcttatcac 1941328  T
Q  211 tgat 214  Q
    ||||    
T  1941327 tgat 1941324  T

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Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 68
Target Start/End: Original strand, 955440 - 955498
Alignment:
Q  10 acgacgacgccgtttcttctccattactgaccgaagcaataatctccattgagaggagg 68  Q
    ||||||||||||||||||||||||| | |||| ||| || |||||||| | ||||||||    
T  955440 acgacgacgccgtttcttctccattcccgaccaaagaaacaatctccactaagaggagg 955498  T

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Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 111 - 214
Target Start/End: Original strand, 19727118 - 19727221
Alignment:
Q  111 ctcttcctttcgatctcattccagaaattctatgtaggctatcggtaaagctcctcatgcaattccgatgtgtgtgcaagtcgtggaattctctaatcac 210  Q
    |||||||||||||||||||||||||||||||| |||||||| | || ||  ||||| |||| ||||||||||| |||||||||| ||||||||||||| |    
T  19727118 ctcttcctttcgatctcattccagaaattctaagtaggctacccgtgaaattcctcttgcagttccgatgtgtttgcaagtcgttgaattctctaatctc 19727217  T
Q  211 tgat 214  Q
    ||||    
T  19727218 tgat 19727221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 225
Target Start/End: Complemental strand, 31145255 - 31145142
Alignment:
Q  112 tcttcctttcgatctcattccagaaattctatgtaggctatcggtaaagctcctcatgcaattccgatgtgtgtgcaagtcgtggaattctctaatcact 211  Q
    ||||||||||||||||||| |||| || || ||||| ||  | || ||  ||||||| |||||||  ||||| |||||||| ||||||||||| ||  ||    
T  31145255 tcttcctttcgatctcattacagatatcctctgtagactccctgtgaaattcctcatacaattccagtgtgtttgcaagtcatggaattctcttatatct 31145156  T
Q  212 gattctaaatttgc 225  Q
    ||| | ||||||||    
T  31145155 gatcccaaatttgc 31145142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 114 - 228
Target Start/End: Complemental strand, 23765105 - 23764991
Alignment:
Q  114 ttcctttcgatctcattccagaaattctatgtaggctatcggtaaagctcctcatgcaattccgatgtgtgtgcaagtcgtggaattctctaatcactga 213  Q
    |||||||||||||||||||||||||||| | ||||||  | || || | |||||||||||| |||||||||||||||| |||||||||||||||  ||||    
T  23765105 ttcctttcgatctcattccagaaattctctataggctccctgtgaaacccctcatgcaatttcgatgtgtgtgcaagtggtggaattctctaatttctga 23765006  T
Q  214 ttctaaatttgccaa 228  Q
    | | ||||| |||||    
T  23765005 tcccaaattcgccaa 23764991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 114 - 228
Target Start/End: Complemental strand, 23814953 - 23814839
Alignment:
Q  114 ttcctttcgatctcattccagaaattctatgtaggctatcggtaaagctcctcatgcaattccgatgtgtgtgcaagtcgtggaattctctaatcactga 213  Q
    |||||||||||||||||||||||||||| | ||||||  | || || | |||||||||||| |||||||||||||||| |||||||||||||||  ||||    
T  23814953 ttcctttcgatctcattccagaaattctctataggctccctgtgaaacccctcatgcaatttcgatgtgtgtgcaagtggtggaattctctaatttctga 23814854  T
Q  214 ttctaaatttgccaa 228  Q
    | | ||||| |||||    
T  23814853 tcccaaattcgccaa 23814839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 114 - 207
Target Start/End: Complemental strand, 23774918 - 23774825
Alignment:
Q  114 ttcctttcgatctcattccagaaattctatgtaggctatcggtaaagctcctcatgcaattccgatgtgtgtgcaagtcgtggaattctctaat 207  Q
    ||||||||||||||||||||||||||||   ||||||  | || || | |||||||||||| |||||||||||||||| |||||||||||||||    
T  23774918 ttcctttcgatctcattccagaaattctccataggctccccgtgaaacccctcatgcaatttcgatgtgtgtgcaagtggtggaattctctaat 23774825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 114 - 207
Target Start/End: Complemental strand, 23861871 - 23861778
Alignment:
Q  114 ttcctttcgatctcattccagaaattctatgtaggctatcggtaaagctcctcatgcaattccgatgtgtgtgcaagtcgtggaattctctaat 207  Q
    ||||||||||||||||||||||||||||   ||||||  | || || | |||||||||||| |||||||||||||||| |||||||||||||||    
T  23861871 ttcctttcgatctcattccagaaattctccataggctccccgtgaaacccctcatgcaatttcgatgtgtgtgcaagtggtggaattctctaat 23861778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 114 - 207
Target Start/End: Complemental strand, 23754884 - 23754791
Alignment:
Q  114 ttcctttcgatctcattccagaaattctatgtaggctatcggtaaagctcctcatgcaattccgatgtgtgtgcaagtcgtggaattctctaat 207  Q
    ||||||||||||||||||||||||||||   ||||||  | || || |  ||||||||||| |||||||||||||||| |||||||||||||||    
T  23754884 ttcctttcgatctcattccagaaattctccataggctccccgtgaaacctctcatgcaatttcgatgtgtgtgcaagtggtggaattctctaat 23754791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 114 - 207
Target Start/End: Complemental strand, 23820339 - 23820246
Alignment:
Q  114 ttcctttcgatctcattccagaaattctatgtaggctatcggtaaagctcctcatgcaattccgatgtgtgtgcaagtcgtggaattctctaat 207  Q
    ||||||||||||||||||||||||||||   ||||||  | || || |  ||||||||||| |||||||||||||||| |||||||||||||||    
T  23820339 ttcctttcgatctcattccagaaattctccataggctccccgtgaaacctctcatgcaatttcgatgtgtgtgcaagtggtggaattctctaat 23820246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 114 - 228
Target Start/End: Original strand, 23691163 - 23691277
Alignment:
Q  114 ttcctttcgatctcattccagaaattctatgtaggctatcggtaaagctcctcatgcaattccgatgtgtgtgcaagtcgtggaattctctaatcactga 213  Q
    |||||| ||||||||||||| |||||||    |||||  |||| || | |||||||||||| |||||||||||||||  |||||||||||||||  ||||    
T  23691163 ttccttgcgatctcattccataaattctccacaggcttccggtgaaacccctcatgcaatttcgatgtgtgtgcaagctgtggaattctctaatttctga 23691262  T
Q  214 ttctaaatttgccaa 228  Q
    | | ||||| |||||    
T  23691263 tcccaaattcgccaa 23691277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 111 - 207
Target Start/End: Original strand, 11081380 - 11081476
Alignment:
Q  111 ctcttcctttcgatctcattccagaaattctatgtaggctatcggtaaagctcctcatgcaattccgatgtgtgtgcaagtcgtggaattctctaat 207  Q
    ||||||||| ||||||||||| |||||| ||||||||| || |||| ||| || || | | ||||| |||||| ||||||||||| |||||| ||||    
T  11081380 ctcttccttccgatctcattctagaaatcctatgtaggttaccggttaagttcatccttcgattccaatgtgtttgcaagtcgtgaaattctttaat 11081476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 228
Target Start/End: Complemental strand, 20020640 - 20020524
Alignment:
Q  112 tcttcctttcgatctcattccagaaattctatgtaggctatcggtaaagctcctcatgcaattccgatgtgtgtgcaagtcgtggaattctctaatcact 211  Q
    |||||||||||| ||||||  ||||||||| |||||| || | || ||||||||| | ||| | |||||||| || || || ||||||||||| ||| ||    
T  20020640 tcttcctttcgacctcattgaagaaattctgtgtaggttaccagtgaagctcctccttcaacttcgatgtgtatgtaattcatggaattctctcatctct 20020541  T
Q  212 gattctaaatttgccaa 228  Q
     || |||||||| ||||    
T  20020540 catcctaaattttccaa 20020524  T

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