View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3428_low_19 (Length: 240)
Name: NF3428_low_19
Description: NF3428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3428_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 964052 - 963838
Alignment:
| Q |
1 |
atcactaattaacaaattgagctacaattcggccacaatttactctactcctctctaagtggcgctttattatctcttctccaaataattatcatattag |
100 |
Q |
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| T |
964052 |
atcactaattaacaaattgagctacaatttggccacagtttactgtactcctctctaagtaacgctttattatctcttctccaaataattatcatattag |
963953 |
T |
|
| Q |
101 |
gttttacactttctttagtttcttgtttgttgcccctattttcattctccaatctccaacatgtaaatagtgctgcaacattctccaatctctatggttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |
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| T |
963952 |
gttttacactttctttagtttcttgtttgttgcccctattttcattctccaatctccaacatgtaaatagtgctgcaacattctccaatctcta-gattc |
963854 |
T |
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| Q |
201 |
ttgggtattgaaagtt |
216 |
Q |
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|||||| ||||||||| |
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| T |
963853 |
ttgggtcttgaaagtt |
963838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 66 - 166
Target Start/End: Original strand, 23857654 - 23857753
Alignment:
| Q |
66 |
tttattatctcttctccaaataattatcatattaggttttacactttctttagtttcttgtttgttgcccctattttcattctccaatctccaacatgta |
165 |
Q |
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| T |
23857654 |
tttattgtctcttctctaaataattaccggattatgttttatacgt-ctttggtttcttgtttgttgccgccatttccattctccaatatctaacatgta |
23857752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 14216725 - 14216678
Alignment:
| Q |
1 |
atcactaattaacaaattgagctacaattcggccacaatttactctac |
48 |
Q |
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||||| |||||||||| |||||| ||||| |||||||||||||||||| |
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| T |
14216725 |
atcacaaattaacaaaatgagctgcaatttggccacaatttactctac |
14216678 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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