View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3428_low_6 (Length: 389)
Name: NF3428_low_6
Description: NF3428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3428_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 12 - 370
Target Start/End: Complemental strand, 2737993 - 2737636
Alignment:
| Q |
12 |
acagacactggaatttggttaacgatgaattaatgaaactcatatgttagtgatgaggttgaaggagtgtggattttataataagatgagggcttaagga |
111 |
Q |
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| T |
2737993 |
acagacactggaatttggttaacgatgaattaatgaaactcatatgtt-gtgatgaggttgaaggagtgtggattttataataagatgagggcttaagga |
2737895 |
T |
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| Q |
112 |
ggaaatgaaatttgaaggagaaaaaggagtcgaggatgttaatgtgttattgttgggaaaaatccgaagaaaccgtgggatgaacgtgtttgcgattttt |
211 |
Q |
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| T |
2737894 |
ggaaatgaaatttgaaggagaaaaaggagtcgaggatgttaatgtgttattgttgggaaaaatccgaagaaaccgtgggatgaacgtgtttgcgattttt |
2737795 |
T |
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| Q |
212 |
gtgttaaaaccacgttgtgttgtttatgtttaggtaaaatttgtgtgccgacaaccttaattatacatgtgataattatggttttgttttgaatttttct |
311 |
Q |
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| T |
2737794 |
gtgttaaaaccacgttgtgttgtttatgtttaggtaaaatttgtgtgccgacaaccttaattatacatgtgacaattatggttttgttttgaatttttct |
2737695 |
T |
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| Q |
312 |
tatatttggctaaattgtaggtatggtgggtgagtaataatatcaaccgtacagatcta |
370 |
Q |
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| T |
2737694 |
tatatttggctaaattataggtatggtgggtgagtaataatatcaaccgtacaaatcta |
2737636 |
T |
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