View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3428_low_9 (Length: 345)
Name: NF3428_low_9
Description: NF3428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3428_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 270; Significance: 1e-151; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 336
Target Start/End: Original strand, 40060056 - 40060400
Alignment:
| Q |
1 |
ttatcactaaatacaagtattgcgagtatatttttgtagata-----------aagtttatatttgttaatgtgagagtatttgtgctttctattgccag |
89 |
Q |
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| T |
40060056 |
ttatcactaaatacaattatagcgagtatatttttgtagacatattaaggtcaaagttaatatttgttaatgtgagagtatttgtgct--ctattgccag |
40060153 |
T |
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| Q |
90 |
attgaaaatgagtatggagacatcgattcagcctatggttctgctggtaaatcatacatcaattgggcagcaaaaatggctacatctcttgatacaggtg |
189 |
Q |
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| T |
40060154 |
attgaaaatgagtatggagacatcgattcagcctatggttctgctggtaaatcatacatcaattgggcagcaaaaatggctacatctcttgatacaggtg |
40060253 |
T |
|
| Q |
190 |
taccttgggtcatgtgtcagcaagaagatgctcctaatccaatcgtaggttttatgttttgatatgtctacgctaattgttttttggtttactaggttgc |
289 |
Q |
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||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
40060254 |
taccttgggtcatgtgtcagcaagaagatgctcctgattcaatcgtaggttttatgttttgatatgtctacgctaattgttttctggtttactaggttgc |
40060353 |
T |
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| Q |
290 |
ctgtcttctggaaaagagaaatcttagtatgttgtctgcattcatct |
336 |
Q |
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| T |
40060354 |
ctgtcttctggaaaagagaaatcttagtatgttgtctgcattcatct |
40060400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 42 - 341
Target Start/End: Original strand, 40085994 - 40086300
Alignment:
| Q |
42 |
aaagtttatatttgttaatgtgagagtatttgtgctttctattgccagattgaaaatgagtatggagacatcgattcagcctatggttctgctggtaaat |
141 |
Q |
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| T |
40085994 |
aaagtttatatttgttaatgtgagagtgtttgtgatttctaatgacagatagaaaatgagtatggagacatcgattcagcctatggttctgctggtaaat |
40086093 |
T |
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| Q |
142 |
catacatcaattgggcagcaaaaatggctacatctcttgatacaggtgtaccttgggtcatgtgtcagcaagaagatgctcctaatccaatcgtaggttt |
241 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| ||| |||| |
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| T |
40086094 |
catacatcaattgggcagcaaaaatggctacatctcttgatacaggtgtaccttgggtcatgtgtcagcaagcagatgctcctgatccaattgtaagttt |
40086193 |
T |
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| Q |
242 |
tatgttttgatatgtctacgctaattgttttt-------tggtttactaggttgcctgtcttctggaaaagagaaatcttagtatgttgtctgcattcat |
334 |
Q |
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| T |
40086194 |
tatgttttgatatgtcaatgttaattgttttttagtttatggtttactaggttgcctgtcttccggaaaagagcaatcttggtatgccgtttgcattcat |
40086293 |
T |
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| Q |
335 |
ctcactc |
341 |
Q |
| |
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|| |||| |
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| T |
40086294 |
cttactc |
40086300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 49 - 255
Target Start/End: Original strand, 40078205 - 40078411
Alignment:
| Q |
49 |
atatttgttaatgtgagagtatttgtgctttctattgccagattgaaaatgagtatggagacatcgattcagcctatggttctgctggtaaatcatacat |
148 |
Q |
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| T |
40078205 |
atatttgttaatgtgagagtatttgtgctttctaatgccagattgaaaatgagtatggaaacattgatagtcactatggttctgctggtaaatcatacat |
40078304 |
T |
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| Q |
149 |
caattgggcagcaaaaatggctacatctcttgatacaggtgtaccttgggtcatgtgtcagcaagaagatgctcctaatccaatcgtaggttttatgttt |
248 |
Q |
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||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||||||| ||||||||||| |
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| T |
40078305 |
caactgggctgcaaaaatggctacatctcttgatacaggtgttccttgggtcatgtgtcagcaaggagatgctcctgatccaatcgtaagttttatgttt |
40078404 |
T |
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| Q |
249 |
tgatatg |
255 |
Q |
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| ||||| |
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| T |
40078405 |
taatatg |
40078411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 84 - 211
Target Start/End: Complemental strand, 22015462 - 22015335
Alignment:
| Q |
84 |
tgccagattgaaaatgagtatggagacatcgattcagcctatggttctgctggtaaatcatacatcaattgggcagcaaaaatggctacatctcttgata |
183 |
Q |
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||||||||||||||||||||||| |||| ||| || ||| | ||||| |||||| |||||| ||||||||||| |||||||||||||||||||| |
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| T |
22015462 |
tgccagattgaaaatgagtatgggaacattgatacacatgatgctcgtgctgctaaatcctacatcgattgggcagcatcaatggctacatctcttgata |
22015363 |
T |
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| Q |
184 |
caggtgtaccttgggtcatgtgtcagca |
211 |
Q |
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| T |
22015362 |
caggtgttccctggattatgtgccagca |
22015335 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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