View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3429_low_1 (Length: 491)
Name: NF3429_low_1
Description: NF3429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3429_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 182; Significance: 3e-98; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 284 - 485
Target Start/End: Original strand, 19630439 - 19630640
Alignment:
| Q |
284 |
ttctagtttgtgtattgaatatgctgaatattgggaaaaaagttcatacaagtgataggctcggtgacaattgaagaatgatgatgagaatggtaacgag |
383 |
Q |
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|||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19630439 |
ttctagtttgtgtagtgaatatcctgaatattgggaaaaaagttcatacaagtgataggctcggtgacaattgaagaatgatgatgagaatggtaacgag |
19630538 |
T |
|
| Q |
384 |
agtatagataatgatgatgaagtgctctatgtagccagtagtataagaattccactggtccagcatgcaagagagctgtaagaaccacaccatctgtgct |
483 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
19630539 |
agtatagataatgatgatgaagtgctctatgtagccaatagtataagaactccactggtccagcatgcaagagagctgtaagaaccacaccatctgttct |
19630638 |
T |
|
| Q |
484 |
cc |
485 |
Q |
| |
|
|| |
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|
| T |
19630639 |
cc |
19630640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 18 - 213
Target Start/End: Original strand, 19630183 - 19630379
Alignment:
| Q |
18 |
aaaattgcaatgacccatgttgttcataaaatcgatgtaaaagatataaccatacaccgcagcaacagacgannnnnnnacgaacattgttg-tcaatat |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||| |
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| T |
19630183 |
aaaattgcaatgacccatgttgttcataaaatcgatgtaaaagatataaccatacaccgcagcaatagacgatttttttacgaacattgttgctcaatat |
19630282 |
T |
|
| Q |
117 |
tgggatnnnnnnnngtgtgaaatatgccaatatctcagcaaatgggtgtatcacagctgtcataaacaacaccaacaaaaagttaaatatcttccaa |
213 |
Q |
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| T |
19630283 |
tgggataaaaaaaagtgtgaaatatgccaatatctcagcaaatgggtgtatcacagctgtcataaacaacaacaacaaaaagttaaatatcttccaa |
19630379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 317 - 485
Target Start/End: Complemental strand, 19684325 - 19684157
Alignment:
| Q |
317 |
ggaaaaaagttcatacaagtgataggctcggtgacaattgaagaatgatgatgagaatggtaacgagagtatagataatgatgatgaagtgctctatgta |
416 |
Q |
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|||||||||||||||| ||||||||| || |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
19684325 |
ggaaaaaagttcataccagtgataggttcagtgacaattgaagaatgatggtgagaatggtaacgagaatatagataatgatgatgaagtgctctatgta |
19684226 |
T |
|
| Q |
417 |
gccagtagtataagaattccactggtccagcatgcaagagagctgtaagaaccacaccatctgtgctcc |
485 |
Q |
| |
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|||| ||||||||||| |||||||||||||||||||||| ||||||||||| |||||||||||| |||| |
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| T |
19684225 |
gccaatagtataagaactccactggtccagcatgcaagatagctgtaagaatcacaccatctgttctcc |
19684157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 18 - 182
Target Start/End: Complemental strand, 19684643 - 19684479
Alignment:
| Q |
18 |
aaaattgcaatgacccatgttgttcataaaatcgatgtaaaagatataaccatacaccgcagcaacagacgannnnnnnacgaacattgttgtcaatatt |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||| ||| | ||||| ||||||||| ||| |
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| T |
19684643 |
aaaattgcaatgacccatgttgttcataaaatcgatgtaaaagatataaccatacaatgcaaccacactcgattttttcatgaacaatgttgtcaacatt |
19684544 |
T |
|
| Q |
118 |
gggatnnnnnnnngtgtgaaatatgccaatatctcagcaaatgggtgtatcacagctgtcataaa |
182 |
Q |
| |
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|| || |||||||||||||||| |||||||||||||| ||| |||| ||||||||||| |
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|
| T |
19684543 |
ggtataagaaaaagtgtgaaatatgccaacatctcagcaaatggatgtgtcaccgctgtcataaa |
19684479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 112; Significance: 2e-56; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 319 - 478
Target Start/End: Complemental strand, 35379261 - 35379102
Alignment:
| Q |
319 |
aaaaaagttcatacaagtgataggctcggtgacaattgaagaatgatgatgagaatggtaacgagagtatagataatgatgatgaagtgctctatgtagc |
418 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||| |
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| T |
35379261 |
aaaaaagttcatacaagtgataggctcagtgacaattgaagaatgatggtgagaatgataacgagagtatagataatgatgatgaagtgctctatgaagc |
35379162 |
T |
|
| Q |
419 |
cagtagtataagaattccactggtccagcatgcaagagagctgtaagaaccacaccatct |
478 |
Q |
| |
|
|| |||||||| || || ||||||||||||||||| | |||||||||| |||||||||| |
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|
| T |
35379161 |
caatagtataaaaactcgactggtccagcatgcaatattgctgtaagaatcacaccatct |
35379102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 319 - 478
Target Start/End: Complemental strand, 35354757 - 35354598
Alignment:
| Q |
319 |
aaaaaagttcatacaagtgataggctcggtgacaattgaagaatgatgatgagaatggtaacgagagtatagataatgatgatgaagtgctctatgtagc |
418 |
Q |
| |
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||||||||||||||||||||||||||| || |||||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||| ||| |
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| T |
35354757 |
aaaaaagttcatacaagtgataggctcagtaacaattgaagaatggtgatgagagtgataacgagagtatagataatgatgatgaagtgctctatgaagc |
35354658 |
T |
|
| Q |
419 |
cagtagtataagaattccactggtccagcatgcaagagagctgtaagaaccacaccatct |
478 |
Q |
| |
|
|| |||||||| || |||||||||||||||||||| | |||||||||| |||||||||| |
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| T |
35354657 |
caatagtataaaaactccactggtccagcatgcaatattgctgtaagaatcacaccatct |
35354598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 319 - 478
Target Start/End: Complemental strand, 35369902 - 35369743
Alignment:
| Q |
319 |
aaaaaagttcatacaagtgataggctcggtgacaattgaagaatgatgatgagaatggtaacgagagtatagataatgatgatgaagtgctctatgtagc |
418 |
Q |
| |
|
|||| ||||||||||||||| |||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||| |
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| T |
35369902 |
aaaagagttcatacaagtgacaggctcagtgacaattgaagaatgatggtgagaatgataacgagagtatagataatgatgatgaagtgctctatgaagc |
35369803 |
T |
|
| Q |
419 |
cagtagtataagaattccactggtccagcatgcaagagagctgtaagaaccacaccatct |
478 |
Q |
| |
|
|| |||||||| || || ||||||||||||||||| | |||||||||| |||||||||| |
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|
| T |
35369802 |
caatagtataaaaactcgactggtccagcatgcaatattgctgtaagaatcacaccatct |
35369743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 22 - 73
Target Start/End: Complemental strand, 35380995 - 35380944
Alignment:
| Q |
22 |
ttgcaatgacccatgttgttcataaaatcgatgtaaaagatataaccataca |
73 |
Q |
| |
|
|||||||||||||| |||||||| ||||| |||||||| ||||||||||||| |
|
|
| T |
35380995 |
ttgcaatgacccatattgttcatgaaatcaatgtaaaatatataaccataca |
35380944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 71
Target Start/End: Complemental strand, 35354989 - 35354940
Alignment:
| Q |
22 |
ttgcaatgacccatgttgttcataaaatcgatgtaaaagatataaccata |
71 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||| |||||| ||| ||||| |
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|
| T |
35354989 |
ttgcaatgacccatgttgttcatgaaatcaatgaaaaagacatagccata |
35354940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 350 - 445
Target Start/End: Original strand, 2258463 - 2258558
Alignment:
| Q |
350 |
acaattgaagaatgatgatgagaatggtaacgagagtatagataatgatgatgaagtgctctatgtagccagtagtataagaattccactggtcca |
445 |
Q |
| |
|
||||| |||||||||||||||||||| || | ||| || || ||||||||||||||||||| |||| ||| ||||| | || |||||||||||| |
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|
| T |
2258463 |
acaatggaagaatgatgatgagaatgatatctagaatagaggaaatgatgatgaagtgctctgtgtaaccaatagtaaagaaactccactggtcca |
2258558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 350 - 450
Target Start/End: Original strand, 2280453 - 2280553
Alignment:
| Q |
350 |
acaattgaagaatgatgatgagaatggtaacgagagtatagataatgatgatgaagtgctctatgtagccagtagtataagaattccactggtccagcat |
449 |
Q |
| |
|
||||| |||||||||||||||||||| || | ||| || || ||||||||||||||||||| |||| ||| || || | ||||| |||| |||||||| |
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| T |
2280453 |
acaatggaagaatgatgatgagaatgatatctagaatagaggaaatgatgatgaagtgctctgtgtaaccaataataaagaaattcaactgctccagcat |
2280552 |
T |
|
| Q |
450 |
g |
450 |
Q |
| |
|
| |
|
|
| T |
2280553 |
g |
2280553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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