View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3429_low_3 (Length: 378)
Name: NF3429_low_3
Description: NF3429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3429_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 318; Significance: 1e-179; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 11 - 360
Target Start/End: Complemental strand, 44863602 - 44863253
Alignment:
| Q |
11 |
agcagagaaacaaaaaatcatgaaataaatggtttatatcttcaatggtattttagtacgtttctgaaactttcttagctcagcgcctttgctttcttta |
110 |
Q |
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| T |
44863602 |
agcaaagaaagaaaaaatcatgaaataaatggtttatatcttcaatggtattttagtacatttctgaaactttcttagctcagcgcctttgctttcttta |
44863503 |
T |
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| Q |
111 |
tctcagcattgatttttccattcagccccttctaatattcttgctaagggcataagtactgaagattcaatatcttttggtgtttctgaatcttacgtgt |
210 |
Q |
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| T |
44863502 |
tctcagcattgatttttccattcagtcccttctaatattcttgctaagggcataagtacagaagattcaatatcttttggtgtttctgaatcttatgtgt |
44863403 |
T |
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| Q |
211 |
gctgctcatccgctgtctctattaacttgctgatatgggatcatcattcttagaatttgggcttaagatcgaactcaaccctattaaaccagcttgtaag |
310 |
Q |
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| T |
44863402 |
gctgctcatccgctgtctctattaacttgctgatatgggatcatcattcttagaatttgggcttaagatcgaactcaaccctattaaaccagcttgtaag |
44863303 |
T |
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| Q |
311 |
gcaaggactacttaaaccttataagcattacataagtcatatctctaatt |
360 |
Q |
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| T |
44863302 |
gcgaggactacttaaaccttataagcattacatatgtcatatctctaatt |
44863253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 172 - 331
Target Start/End: Complemental strand, 44880970 - 44880812
Alignment:
| Q |
172 |
aagattcaatatcttttggtgtttctgaatcttacgtgtgctgctcatccgctgtctctattaacttgctgatatgggatcatcattcttagaatttggg |
271 |
Q |
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| T |
44880970 |
aagattcaaaatcttttggtgtttctggat-ttacaggttcttcgcatccgttgtttctatttacttgctgatatgggatcgtcattcttcgaatttggg |
44880872 |
T |
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| Q |
272 |
cttaagatcgaactcaaccctattaaaccagcttgtaaggcaaggactacttaaacctta |
331 |
Q |
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| T |
44880871 |
attaagatctaacttaaccccattaaaccagcttgtaaggcgatgactacttaaacctta |
44880812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 111
Target Start/End: Complemental strand, 44881056 - 44880999
Alignment:
| Q |
54 |
aatggtattttagtacgtttctgaaactttcttagctcagcgcctttgctttctttat |
111 |
Q |
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| T |
44881056 |
aatggtattttaacgcatttctgaaactttcttagctcattgcctttgttttctttat |
44880999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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