View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3429_low_4 (Length: 349)
Name: NF3429_low_4
Description: NF3429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3429_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 12 - 332
Target Start/End: Complemental strand, 33306426 - 33306106
Alignment:
| Q |
12 |
atgaactatg-aacaatgaattgaaggaaaggaaagtgtaatcacaaaatccgaattttacaatgtagagtcacacttatttatactattctaagtaccc |
110 |
Q |
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| T |
33306426 |
atgaactatggaacaatgaattgaaggaaaggaa-gtgtattcacaaaatccgaattttacaatgtagagtcacacttatttatactattctaagtaccc |
33306328 |
T |
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| Q |
111 |
aacacgcttaactatagttagttatttaactataaccaattattataacatccataactgtcaagacagttagttagttagctaccgaactacgcactta |
210 |
Q |
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| T |
33306327 |
aacacgcttaactatagttagttatttaactataaccaattattataacatccataactgtcaagacagttagttagttagttactgaactacgcactta |
33306228 |
T |
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| Q |
211 |
cttgtctaacaagtaattgcctaaactaatatttaattacactttaccaccctctctcaaggtggaatatatatccaatgttccaagcttgttttccaat |
310 |
Q |
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| T |
33306227 |
cttgtctaacaagtaattgcctaaactaatatttaattacactttaccaccctctctcaaggtggaatatatatccaatgttccaagcttgttttccaat |
33306128 |
T |
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| Q |
311 |
gaggtaaatggtcatggatgaa |
332 |
Q |
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| T |
33306127 |
gaggtaaatggtcatggatgaa |
33306106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 83 - 190
Target Start/End: Original strand, 4307406 - 4307513
Alignment:
| Q |
83 |
acacttatttatactattctaagtacccaacacgcttaactatagttagttatttaactataaccaattattataacatccataactgtcaagacagtta |
182 |
Q |
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| T |
4307406 |
acacttatttatactatgctatgtacctcacaagcttaactatagttagttgtttaactataactaactattgtaacttccataactgtcaaaagagtta |
4307505 |
T |
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| Q |
183 |
gttagtta |
190 |
Q |
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| T |
4307506 |
gttagtta |
4307513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 116 - 189
Target Start/End: Original strand, 18096366 - 18096436
Alignment:
| Q |
116 |
gcttaactatagttagttatttaactataaccaattattataacatccataactgtcaagacagttagttagtt |
189 |
Q |
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| T |
18096366 |
gcttaactatagttagttatttaactataac---taactgtaacttccataacagtcaaaacagttagttagtt |
18096436 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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